* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* Add load_from_config function
* Add train_from_config script
* Merge configs and expose via spacy.config
* Fix script
* Suggest create_evaluation_callback
* Hard-code for NER
* Fix errors
* Register command
* Add TODO
* Update train-from-config todos
* Fix imports
* Allow delayed setting of parser model nr_class
* Get train-from-config working
* Tidy up and fix scores and printing
* Hide traceback if cancelled
* Fix weighted score formatting
* Fix score formatting
* Make output_path optional
* Add Tok2Vec component
* Tidy up and add tok2vec_tensors
* Add option to copy docs in nlp.update
* Copy docs in nlp.update
* Adjust nlp.update() for set_annotations
* Don't shuffle pipes in nlp.update, decruft
* Support set_annotations arg in component update
* Support set_annotations in parser update
* Add get_gradients method
* Add get_gradients to parser
* Update errors.py
* Fix problems caused by merge
* Add _link_components method in nlp
* Add concept of 'listeners' and ControlledModel
* Support optional attributes arg in ControlledModel
* Try having tok2vec component in pipeline
* Fix tok2vec component
* Fix config
* Fix tok2vec
* Update for Example
* Update for Example
* Update config
* Add eg2doc util
* Update and add schemas/types
* Update schemas
* Fix nlp.update
* Fix tagger
* Remove hacks from train-from-config
* Remove hard-coded config str
* Calculate loss in tok2vec component
* Tidy up and use function signatures instead of models
* Support union types for registry models
* Minor cleaning in Language.update
* Make ControlledModel specifically Tok2VecListener
* Fix train_from_config
* Fix tok2vec
* Tidy up
* Add function for bilstm tok2vec
* Fix type
* Fix syntax
* Fix pytorch optimizer
* Add example configs
* Update for thinc describe changes
* Update for Thinc changes
* Update for dropout/sgd changes
* Update for dropout/sgd changes
* Unhack gradient update
* Work on refactoring _ml
* Remove _ml.py module
* WIP upgrade cli scripts for thinc
* Move some _ml stuff to util
* Import link_vectors from util
* Update train_from_config
* Import from util
* Import from util
* Temporarily add ml.component_models module
* Move ml methods
* Move typedefs
* Update load vectors
* Update gitignore
* Move imports
* Add PrecomputableAffine
* Fix imports
* Fix imports
* Fix imports
* Fix missing imports
* Update CLI scripts
* Update spacy.language
* Add stubs for building the models
* Update model definition
* Update create_default_optimizer
* Fix import
* Fix comment
* Update imports in tests
* Update imports in spacy.cli
* Fix import
* fix obsolete thinc imports
* update srsly pin
* from thinc to ml_datasets for example data such as imdb
* update ml_datasets pin
* using STATE.vectors
* small fix
* fix Sentencizer.pipe
* black formatting
* rename Affine to Linear as in thinc
* set validate explicitely to True
* rename with_square_sequences to with_list2padded
* rename with_flatten to with_list2array
* chaining layernorm
* small fixes
* revert Optimizer import
* build_nel_encoder with new thinc style
* fixes using model's get and set methods
* Tok2Vec in component models, various fixes
* fix up legacy tok2vec code
* add model initialize calls
* add in build_tagger_model
* small fixes
* setting model dims
* fixes for ParserModel
* various small fixes
* initialize thinc Models
* fixes
* consistent naming of window_size
* fixes, removing set_dropout
* work around Iterable issue
* remove legacy tok2vec
* util fix
* fix forward function of tok2vec listener
* more fixes
* trying to fix PrecomputableAffine (not succesful yet)
* alloc instead of allocate
* add morphologizer
* rename residual
* rename fixes
* Fix predict function
* Update parser and parser model
* fixing few more tests
* Fix precomputable affine
* Update component model
* Update parser model
* Move backprop padding to own function, for test
* Update test
* Fix p. affine
* Update NEL
* build_bow_text_classifier and extract_ngrams
* Fix parser init
* Fix test add label
* add build_simple_cnn_text_classifier
* Fix parser init
* Set gpu off by default in example
* Fix tok2vec listener
* Fix parser model
* Small fixes
* small fix for PyTorchLSTM parameters
* revert my_compounding hack (iterable fixed now)
* fix biLSTM
* Fix uniqued
* PyTorchRNNWrapper fix
* small fixes
* use helper function to calculate cosine loss
* small fixes for build_simple_cnn_text_classifier
* putting dropout default at 0.0 to ensure the layer gets built
* using thinc util's set_dropout_rate
* moving layer normalization inside of maxout definition to optimize dropout
* temp debugging in NEL
* fixed NEL model by using init defaults !
* fixing after set_dropout_rate refactor
* proper fix
* fix test_update_doc after refactoring optimizers in thinc
* Add CharacterEmbed layer
* Construct tagger Model
* Add missing import
* Remove unused stuff
* Work on textcat
* fix test (again :)) after optimizer refactor
* fixes to allow reading Tagger from_disk without overwriting dimensions
* don't build the tok2vec prematuraly
* fix CharachterEmbed init
* CharacterEmbed fixes
* Fix CharacterEmbed architecture
* fix imports
* renames from latest thinc update
* one more rename
* add initialize calls where appropriate
* fix parser initialization
* Update Thinc version
* Fix errors, auto-format and tidy up imports
* Fix validation
* fix if bias is cupy array
* revert for now
* ensure it's a numpy array before running bp in ParserStepModel
* no reason to call require_gpu twice
* use CupyOps.to_numpy instead of cupy directly
* fix initialize of ParserModel
* remove unnecessary import
* fixes for CosineDistance
* fix device renaming
* use refactored loss functions (Thinc PR 251)
* overfitting test for tagger
* experimental settings for the tagger: avoid zero-init and subword normalization
* clean up tagger overfitting test
* use previous default value for nP
* remove toy config
* bringing layernorm back (had a bug - fixed in thinc)
* revert setting nP explicitly
* remove setting default in constructor
* restore values as they used to be
* add overfitting test for NER
* add overfitting test for dep parser
* add overfitting test for textcat
* fixing init for linear (previously affine)
* larger eps window for textcat
* ensure doc is not None
* Require newer thinc
* Make float check vaguer
* Slop the textcat overfit test more
* Fix textcat test
* Fix exclusive classes for textcat
* fix after renaming of alloc methods
* fixing renames and mandatory arguments (staticvectors WIP)
* upgrade to thinc==8.0.0.dev3
* refer to vocab.vectors directly instead of its name
* rename alpha to learn_rate
* adding hashembed and staticvectors dropout
* upgrade to thinc 8.0.0.dev4
* add name back to avoid warning W020
* thinc dev4
* update srsly
* using thinc 8.0.0a0 !
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
* Generalize handling of tokenizer special cases
Handle tokenizer special cases more generally by using the Matcher
internally to match special cases after the affix/token_match
tokenization is complete.
Instead of only matching special cases while processing balanced or
nearly balanced prefixes and suffixes, this recognizes special cases in
a wider range of contexts:
* Allows arbitrary numbers of prefixes/affixes around special cases
* Allows special cases separated by infixes
Existing tests/settings that couldn't be preserved as before:
* The emoticon '")' is no longer a supported special case
* The emoticon ':)' in "example:)" is a false positive again
When merged with #4258 (or the relevant cache bugfix), the affix and
token_match properties should be modified to flush and reload all
special cases to use the updated internal tokenization with the Matcher.
* Remove accidentally added test case
* Really remove accidentally added test
* Reload special cases when necessary
Reload special cases when affixes or token_match are modified. Skip
reloading during initialization.
* Update error code number
* Fix offset and whitespace in Matcher special cases
* Fix offset bugs when merging and splitting tokens
* Set final whitespace on final token in inserted special case
* Improve cache flushing in tokenizer
* Separate cache and specials memory (temporarily)
* Flush cache when adding special cases
* Repeated `self._cache = PreshMap()` and `self._specials = PreshMap()`
are necessary due to this bug:
https://github.com/explosion/preshed/issues/21
* Remove reinitialized PreshMaps on cache flush
* Update UD bin scripts
* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)
* Use special Matcher only for cases with affixes
* Reinsert specials cache checks during normal tokenization for special
cases as much as possible
* Additionally include specials cache checks while splitting on infixes
* Since the special Matcher needs consistent affix-only tokenization
for the special cases themselves, introduce the argument
`with_special_cases` in order to do tokenization with or without
specials cache checks
* After normal tokenization, postprocess with special cases Matcher for
special cases containing affixes
* Replace PhraseMatcher with Aho-Corasick
Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.
The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.
Fixes#4308.
* Restore support for pickling
* Fix internal keyword add/remove for numpy arrays
* Add test for #4248, clean up test
* Improve efficiency of special cases handling
* Use PhraseMatcher instead of Matcher
* Improve efficiency of merging/splitting special cases in document
* Process merge/splits in one pass without repeated token shifting
* Merge in place if no splits
* Update error message number
* Remove UD script modifications
Only used for timing/testing, should be a separate PR
* Remove final traces of UD script modifications
* Update UD bin scripts
* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)
* Add missing loop for match ID set in search loop
* Remove cruft in matching loop for partial matches
There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.
* Replace dict trie with MapStruct trie
* Fix how match ID hash is stored/added
* Update fix for match ID vocab
* Switch from map_get_unless_missing to map_get
* Switch from numpy array to Token.get_struct_attr
Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.
Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)
* Restructure imports to export find_matches
* Implement full remove()
Remove unnecessary trie paths and free unused maps.
Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.
* Switch to PhraseMatcher.find_matches
* Switch to local cdef functions for span filtering
* Switch special case reload threshold to variable
Refer to variable instead of hard-coded threshold
* Move more of special case retokenize to cdef nogil
Move as much of the special case retokenization to nogil as possible.
* Rewrap sort as stdsort for OS X
* Rewrap stdsort with specific types
* Switch to qsort
* Fix merge
* Improve cmp functions
* Fix realloc
* Fix realloc again
* Initialize span struct while retokenizing
* Temporarily skip retokenizing
* Revert "Move more of special case retokenize to cdef nogil"
This reverts commit 0b7e52c797.
* Revert "Switch to qsort"
This reverts commit a98d71a942.
* Fix specials check while caching
* Modify URL test with emoticons
The multiple suffix tests result in the emoticon `:>`, which is now
retokenized into one token as a special case after the suffixes are
split off.
* Refactor _apply_special_cases()
* Use cdef ints for span info used in multiple spots
* Modify _filter_special_spans() to prefer earlier
Parallel to #4414, modify _filter_special_spans() so that the earlier
span is preferred for overlapping spans of the same length.
* Replace MatchStruct with Entity
Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.
* Replace Entity with more general SpanC
* Replace MatchStruct with SpanC
* Add error in debug-data if no dev docs are available (see #4575)
* Update azure-pipelines.yml
* Revert "Update azure-pipelines.yml"
This reverts commit ed1060cf59.
* Use latest wasabi
* Reorganise install_requires
* add dframcy to universe.json (#4580)
* Update universe.json [ci skip]
* Fix multiprocessing for as_tuples=True (#4582)
* Fix conllu script (#4579)
* force extensions to avoid clash between example scripts
* fix arg order and default file encoding
* add example config for conllu script
* newline
* move extension definitions to main function
* few more encodings fixes
* Add load_from_docbin example [ci skip]
TODO: upload the file somewhere
* Update README.md
* Add warnings about 3.8 (resolves#4593) [ci skip]
* Fixed typo: Added space between "recognize" and "various" (#4600)
* Fix DocBin.merge() example (#4599)
* Replace function registries with catalogue (#4584)
* Replace functions registries with catalogue
* Update __init__.py
* Fix test
* Revert unrelated flag [ci skip]
* Bugfix/dep matcher issue 4590 (#4601)
* add contributor agreement for prilopes
* add test for issue #4590
* fix on_match params for DependencyMacther (#4590)
* Minor updates to language example sentences (#4608)
* Add punctuation to Spanish example sentences
* Combine multilanguage examples for lang xx
* Add punctuation to nb examples
* Always realloc to a larger size
Avoid potential (unlikely) edge case and cymem error seen in #4604.
* Add error in debug-data if no dev docs are available (see #4575)
* Update debug-data for GoldCorpus / Example
* Ignore None label in misaligned NER data
* OrigAnnot class instead of gold.orig_annot list of zipped tuples
* from_orig to replace from_annot_tuples
* rename to RawAnnot
* some unit tests for GoldParse creation and internal format
* removing orig_annot and switching to lists instead of tuple
* rewriting tuples to use RawAnnot (+ debug statements, WIP)
* fix pop() changing the data
* small fixes
* pop-append fixes
* return RawAnnot for existing GoldParse to have uniform interface
* clean up imports
* fix merge_sents
* add unit test for 4402 with new structure (not working yet)
* introduce DocAnnot
* typo fixes
* add unit test for merge_sents
* rename from_orig to from_raw
* fixing unit tests
* fix nn parser
* read_annots to produce text, doc_annot pairs
* _make_golds fix
* rename golds_to_gold_annots
* small fixes
* fix encoding
* have golds_to_gold_annots use DocAnnot
* missed a spot
* merge_sents as function in DocAnnot
* allow specifying only part of the token-level annotations
* refactor with Example class + underlying dicts
* pipeline components to work with Example objects (wip)
* input checking
* fix yielding
* fix calls to update
* small fixes
* fix scorer unit test with new format
* fix kwargs order
* fixes for ud and conllu scripts
* fix reading data for conllu script
* add in proper errors (not fixed numbering yet to avoid merge conflicts)
* fixing few more small bugs
* fix EL script
* force extensions to avoid clash between example scripts
* fix arg order and default file encoding
* add example config for conllu script
* newline
* move extension definitions to main function
* few more encodings fixes
* Fix get labels for textcat
* Fix char_embed for gpu
* Revert "Fix char_embed for gpu"
This reverts commit 055b9a9e85.
* Fix passing of cats in gold.pyx
* Revert "Match pop with append for training format (#4516)"
This reverts commit 8e7414dace.
* Fix popping gold parses
* Fix handling of cats in gold tuples
* Fix name
* Fix ner_multitask_objective script
* Add test for 4402
* trying to fix script - not succesful yet
* match pop() with extend() to avoid changing the data
* few more pop-extend fixes
* reinsert deleted print statement
* fix print statement
* add last tested version
* append instead of extend
* add in few comments
* quick fix for 4402 + unit test
* fixing number of docs (not counting cats)
* more fixes
* fix len
* print tmp file instead of using data from examples dir
* print tmp file instead of using data from examples dir (2)
* Add doc.cats to spacy.gold at the paragraph level
Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.
* `spacy.gold.docs_to_json()` writes `docs.cats`
* `GoldCorpus` reads in cats in each `GoldParse`
* Update instances of gold_tuples to handle cats
Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.
* Add textcat to train CLI
* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
* For binary exclusive classes with provided label: F1 for label
* For 2+ exclusive classes: F1 macro average
* For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI
* Fix handling of unset arguments and config params
Fix handling of unset arguments and model confiug parameters in Scorer
initialization.
* Temporarily add sklearn requirement
* Remove sklearn version number
* Improve Scorer handling of models without textcats
* Fixing Scorer handling of models without textcats
* Update Scorer output for python 2.7
* Modify inf in Scorer for python 2.7
* Auto-format
Also make small adjustments to make auto-formatting with black easier and produce nicer results
* Move error message to Errors
* Update documentation
* Add cats to annotation JSON format [ci skip]
* Fix tpl flag and docs [ci skip]
* Switch to internal roc_auc_score
Switch to internal `roc_auc_score()` adapted from scikit-learn.
* Add AUCROCScore tests and improve errors/warnings
* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors
* Make reduced roc_auc_score functions private
Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.
* Check that data corresponds with multilabel flag
Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.
* Add textcat score to early stopping check
* Add more checks to debug-data for textcat
* Add example training data for textcat
* Add more checks to textcat train CLI
* Check configuration when extending base model
* Fix typos
* Update textcat example data
* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.
Co-authored-by: Ines Montani <ines@ines.io>
* document token ent_kb_id
* document span kb_id
* update pipeline documentation
* prior and context weights as bool's instead
* entitylinker api documentation
* drop for both models
* finish entitylinker documentation
* small fixes
* documentation for KB
* candidate documentation
* links to api pages in code
* small fix
* frequency examples as counts for consistency
* consistent documentation about tensors returned by predict
* add entity linking to usage 101
* add entity linking infobox and KB section to 101
* entity-linking in linguistic features
* small typo corrections
* training example and docs for entity_linker
* predefined nlp and kb
* revert back to similarity encodings for simplicity (for now)
* set prior probabilities to 0 when excluded
* code clean up
* bugfix: deleting kb ID from tokens when entities were removed
* refactor train el example to use either model or vocab
* pretrain_kb example for example kb generation
* add to training docs for KB + EL example scripts
* small fixes
* error numbering
* ensure the language of vocab and nlp stay consistent across serialization
* equality with =
* avoid conflict in errors file
* add error 151
* final adjustements to the train scripts - consistency
* update of goldparse documentation
* small corrections
* push commit
* typo fix
* add candidate API to kb documentation
* update API sidebar with EntityLinker and KnowledgeBase
* remove EL from 101 docs
* remove entity linker from 101 pipelines / rephrase
* custom el model instead of existing model
* set version to 2.2 for EL functionality
* update documentation for 2 CLI scripts
* Updates/bugfixes for NER/IOB converters
* Converter formats `ner` and `iob` use autodetect to choose a converter if
possible
* `iob2json` is reverted to handle sentence-per-line data like
`word1|pos1|ent1 word2|pos2|ent2`
* Fix bug in `merge_sentences()` so the second sentence in each batch isn't
skipped
* `conll_ner2json` is made more general so it can handle more formats with
whitespace-separated columns
* Supports all formats where the first column is the token and the final
column is the IOB tag; if present, the second column is the POS tag
* As in CoNLL 2003 NER, blank lines separate sentences, `-DOCSTART- -X- O O`
separates documents
* Add option for segmenting sentences (new flag `-s`)
* Parser-based sentence segmentation with a provided model, otherwise with
sentencizer (new option `-b` to specify model)
* Can group sentences into documents with `n_sents` as long as sentence
segmentation is available
* Only applies automatic segmentation when there are no existing delimiters
in the data
* Provide info about settings applied during conversion with warnings and
suggestions if settings conflict or might not be not optimal.
* Add tests for common formats
* Add '(default)' back to docs for -c auto
* Add document count back to output
* Revert changes to converter output message
* Use explicit tabs in convert CLI test data
* Adjust/add messages for n_sents=1 default
* Add sample NER data to training examples
* Update README
* Add links in docs to example NER data
* Define msg within converters
* Fix typo in rule-based matching docs
* Improve token pattern checking without validation
Add more detailed token pattern checks without full JSON pattern validation and
provide more detailed error messages.
Addresses #4070 (also related: #4063, #4100).
* Check whether top-level attributes in patterns and attr for PhraseMatcher are
in token pattern schema
* Check whether attribute value types are supported in general (as opposed to
per attribute with full validation)
* Report various internal error types (OverflowError, AttributeError, KeyError)
as ValueError with standard error messages
* Check for tagger/parser in PhraseMatcher pipeline for attributes TAG, POS,
LEMMA, and DEP
* Add error messages with relevant details on how to use validate=True or nlp()
instead of nlp.make_doc()
* Support attr=TEXT for PhraseMatcher
* Add NORM to schema
* Expand tests for pattern validation, Matcher, PhraseMatcher, and EntityRuler
* Remove unnecessary .keys()
* Rephrase error messages
* Add another type check to Matcher
Add another type check to Matcher for more understandable error messages
in some rare cases.
* Support phrase_matcher_attr=TEXT for EntityRuler
* Don't use spacy.errors in examples and bin scripts
* Fix error code
* Auto-format
Also try get Azure pipelines to finally start a build :(
* Update errors.py
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* document token ent_kb_id
* document span kb_id
* update pipeline documentation
* prior and context weights as bool's instead
* entitylinker api documentation
* drop for both models
* finish entitylinker documentation
* small fixes
* documentation for KB
* candidate documentation
* links to api pages in code
* small fix
* frequency examples as counts for consistency
* consistent documentation about tensors returned by predict
* add entity linking to usage 101
* add entity linking infobox and KB section to 101
* entity-linking in linguistic features
* small typo corrections
* training example and docs for entity_linker
* predefined nlp and kb
* revert back to similarity encodings for simplicity (for now)
* set prior probabilities to 0 when excluded
* code clean up
* bugfix: deleting kb ID from tokens when entities were removed
* refactor train el example to use either model or vocab
* pretrain_kb example for example kb generation
* add to training docs for KB + EL example scripts
* small fixes
* error numbering
* ensure the language of vocab and nlp stay consistent across serialization
* equality with =
* avoid conflict in errors file
* add error 151
* final adjustements to the train scripts - consistency
* update of goldparse documentation
* small corrections
* push commit
* turn kb_creator into CLI script (wip)
* proper parameters for training entity vectors
* wikidata pipeline split up into two executable scripts
* remove context_width
* move wikidata scripts in bin directory, remove old dummy script
* refine KB script with logs and preprocessing options
* small edits
* small improvements to logging of EL CLI script
* Fix code for bag-of-words feature extraction
The _ml.py module had a redundant copy of a function to extract unigram
bag-of-words features, except one had a bug that set values to 0.
Another function allowed extraction of bigram features. Replace all three
with a new function that supports arbitrary ngram sizes and also allows
control of which attribute is used (e.g. ORTH, LOWER, etc).
* Support 'bow' architecture for TextCategorizer
This allows efficient ngram bag-of-words models, which are better when
the classifier needs to run quickly, especially when the texts are long.
Pass architecture="bow" to use it. The extra arguments ngram_size and
attr are also available, e.g. ngram_size=2 means unigram and bigram
features will be extracted.
* Fix size limits in train_textcat example
* Explain architectures better in docs
* Example file does not adhere to json input spec.
According to the [json input spec ](https://spacy.io/api/annotation#json-input) the `id ` needs to be an `int` not a string. Using a string as `id` results in a `TypeError` when calling `spacy.gold.read_json_file()`.
* Add spaCy Contributor Agreement.
* Update call to `mkdir()` to create the parents
- Update the call to `output_dir.mkdir()` to also create the parents if needed
* don't automatically create parents but fail fast if cannot create directory
* add signed contributors agreement for retnuh
The new spacy pretrain command implemented BERT/ULMFit/etc-like transfer learning, using our Language Modelling with Approximate Outputs version of BERT's cloze task. Pretraining is convenient, but in some ways it's a bit of a strange solution. All we're doing is initialising the weights. At the same time, we're putting a lot of work into our optimisation so that it's less sensitive to initial conditions, and more likely to find good optima. I discuss this a bit in the pseudo-rehearsal blog post: https://explosion.ai/blog/pseudo-rehearsal-catastrophic-forgetting
Support semi-supervised learning in spacy train
One obvious way to improve these pretraining methods is to do multi-task learning, instead of just transfer learning. This has been shown to work very well: https://arxiv.org/pdf/1809.08370.pdf . This patch makes it easy to do this sort of thing.
Add a new argument to spacy train, --raw-text. This takes a jsonl file with unlabelled data that can be used in arbitrary ways to do semi-supervised learning.
Add a new method to the Language class and to pipeline components, .rehearse(). This is like .update(), but doesn't expect GoldParse objects. It takes a batch of Doc objects, and performs an update on some semi-supervised objective.
Move the BERT-LMAO objective out from spacy/cli/pretrain.py into spacy/_ml.py, so we can create a new pipeline component, ClozeMultitask. This can be specified as a parser or NER multitask in the spacy train command. Example usage:
python -m spacy train en ./tmp ~/data/en-core-web/train/nw.json ~/data/en-core-web/dev/nw.json --pipeline parser --raw-textt ~/data/unlabelled/reddit-100k.jsonl --vectors en_vectors_web_lg --parser-multitasks cloze
Implement rehearsal methods for pipeline components
The new --raw-text argument and nlp.rehearse() method also gives us a good place to implement the the idea in the pseudo-rehearsal blog post in the parser. This works as follows:
Add a new nlp.resume_training() method. This allocates copies of pre-trained models in the pipeline, setting things up for the rehearsal updates. It also returns an optimizer object. This also greatly reduces confusion around the nlp.begin_training() method, which randomises the weights, making it not suitable for adding new labels or otherwise fine-tuning a pre-trained model.
Implement rehearsal updates on the Parser class, making it available for the dependency parser and NER. During rehearsal, the initial model is used to supervise the model being trained. The current model is asked to match the predictions of the initial model on some data. This minimises catastrophic forgetting, by keeping the model's predictions close to the original. See the blog post for details.
Implement rehearsal updates for tagger
Implement rehearsal updates for text categoriz
Currently the TextCategorizer defaults to a fairly complicated model, designed partly around the active learning requirements of Prodigy. The model's a bit slow, and not very GPU-friendly.
This patch implements a straightforward CNN model that still performs pretty well. The replacement model also makes it easy to use the LMAO pretraining, since most of the parameters are in the CNN.
The replacement model has a flag to specify whether labels are mutually exclusive, which defaults to True. This has been a common problem with the text classifier. We'll also now be able to support adding labels to pretrained models again.
Resolves#2934, #2756, #1798, #1748.
* Create aryaprabhudesai.md (#2681)
* Update _install.jade (#2688)
Typo fix: "models" -> "model"
* Add FAC to spacy.explain (resolves#2706)
* Remove docstrings for deprecated arguments (see #2703)
* When calling getoption() in conftest.py, pass a default option (#2709)
* When calling getoption() in conftest.py, pass a default option
This is necessary to allow testing an installed spacy by running:
pytest --pyargs spacy
* Add contributor agreement
* update bengali token rules for hyphen and digits (#2731)
* Less norm computations in token similarity (#2730)
* Less norm computations in token similarity
* Contributor agreement
* Remove ')' for clarity (#2737)
Sorry, don't mean to be nitpicky, I just noticed this when going through the CLI and thought it was a quick fix. That said, if this was intention than please let me know.
* added contributor agreement for mbkupfer (#2738)
* Basic support for Telugu language (#2751)
* Lex _attrs for polish language (#2750)
* Signed spaCy contributor agreement
* Added polish version of english lex_attrs
* Introduces a bulk merge function, in order to solve issue #653 (#2696)
* Fix comment
* Introduce bulk merge to increase performance on many span merges
* Sign contributor agreement
* Implement pull request suggestions
* Describe converters more explicitly (see #2643)
* Add multi-threading note to Language.pipe (resolves#2582) [ci skip]
* Fix formatting
* Fix dependency scheme docs (closes#2705) [ci skip]
* Don't set stop word in example (closes#2657) [ci skip]
* Add words to portuguese language _num_words (#2759)
* Add words to portuguese language _num_words
* Add words to portuguese language _num_words
* Update Indonesian model (#2752)
* adding e-KTP in tokenizer exceptions list
* add exception token
* removing lines with containing space as it won't matter since we use .split() method in the end, added new tokens in exception
* add tokenizer exceptions list
* combining base_norms with norm_exceptions
* adding norm_exception
* fix double key in lemmatizer
* remove unused import on punctuation.py
* reformat stop_words to reduce number of lines, improve readibility
* updating tokenizer exception
* implement is_currency for lang/id
* adding orth_first_upper in tokenizer_exceptions
* update the norm_exception list
* remove bunch of abbreviations
* adding contributors file
* Fixed spaCy+Keras example (#2763)
* bug fixes in keras example
* created contributor agreement
* Adding French hyphenated first name (#2786)
* Fix typo (closes#2784)
* Fix typo (#2795) [ci skip]
Fixed typo on line 6 "regcognizer --> recognizer"
* Adding basic support for Sinhala language. (#2788)
* adding Sinhala language package, stop words, examples and lex_attrs.
* Adding contributor agreement
* Updating contributor agreement
* Also include lowercase norm exceptions
* Fix error (#2802)
* Fix error
ValueError: cannot resize an array that references or is referenced
by another array in this way. Use the resize function
* added spaCy Contributor Agreement
* Add charlax's contributor agreement (#2805)
* agreement of contributor, may I introduce a tiny pl languge contribution (#2799)
* Contributors agreement
* Contributors agreement
* Contributors agreement
* Add jupyter=True to displacy.render in documentation (#2806)
* Revert "Also include lowercase norm exceptions"
This reverts commit 70f4e8adf3.
* Remove deprecated encoding argument to msgpack
* Set up dependency tree pattern matching skeleton (#2732)
* Fix bug when too many entity types. Fixes#2800
* Fix Python 2 test failure
* Require older msgpack-numpy
* Restore encoding arg on msgpack-numpy
* Try to fix version pin for msgpack-numpy
* Update Portuguese Language (#2790)
* Add words to portuguese language _num_words
* Add words to portuguese language _num_words
* Portuguese - Add/remove stopwords, fix tokenizer, add currency symbols
* Extended punctuation and norm_exceptions in the Portuguese language
* Correct error in spacy universe docs concerning spacy-lookup (#2814)
* Update Keras Example for (Parikh et al, 2016) implementation (#2803)
* bug fixes in keras example
* created contributor agreement
* baseline for Parikh model
* initial version of parikh 2016 implemented
* tested asymmetric models
* fixed grevious error in normalization
* use standard SNLI test file
* begin to rework parikh example
* initial version of running example
* start to document the new version
* start to document the new version
* Update Decompositional Attention.ipynb
* fixed calls to similarity
* updated the README
* import sys package duh
* simplified indexing on mapping word to IDs
* stupid python indent error
* added code from https://github.com/tensorflow/tensorflow/issues/3388 for tf bug workaround
* Fix typo (closes#2815) [ci skip]
* Update regex version dependency
* Set version to 2.0.13.dev3
* Skip seemingly problematic test
* Remove problematic test
* Try previous version of regex
* Revert "Remove problematic test"
This reverts commit bdebbef455.
* Unskip test
* Try older version of regex
* 💫 Update training examples and use minibatching (#2830)
<!--- Provide a general summary of your changes in the title. -->
## Description
Update the training examples in `/examples/training` to show usage of spaCy's `minibatch` and `compounding` helpers ([see here](https://spacy.io/usage/training#tips-batch-size) for details). The lack of batching in the examples has caused some confusion in the past, especially for beginners who would copy-paste the examples, update them with large training sets and experienced slow and unsatisfying results.
### Types of change
enhancements
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Visual C++ link updated (#2842) (closes#2841) [ci skip]
* New landing page
* Add contribution agreement
* Correcting lang/ru/examples.py (#2845)
* Correct some grammatical inaccuracies in lang\ru\examples.py; filled Contributor Agreement
* Correct some grammatical inaccuracies in lang\ru\examples.py
* Move contributor agreement to separate file
* Set version to 2.0.13.dev4
* Add Persian(Farsi) language support (#2797)
* Also include lowercase norm exceptions
* Remove in favour of https://github.com/explosion/spaCy/graphs/contributors
* Rule-based French Lemmatizer (#2818)
<!--- Provide a general summary of your changes in the title. -->
## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->
Add a rule-based French Lemmatizer following the english one and the excellent PR for [greek language optimizations](https://github.com/explosion/spaCy/pull/2558) to adapt the Lemmatizer class.
### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->
- Lemma dictionary used can be found [here](http://infolingu.univ-mlv.fr/DonneesLinguistiques/Dictionnaires/telechargement.html), I used the XML version.
- Add several files containing exhaustive list of words for each part of speech
- Add some lemma rules
- Add POS that are not checked in the standard Lemmatizer, i.e PRON, DET, ADV and AUX
- Modify the Lemmatizer class to check in lookup table as a last resort if POS not mentionned
- Modify the lemmatize function to check in lookup table as a last resort
- Init files are updated so the model can support all the functionalities mentioned above
- Add words to tokenizer_exceptions_list.py in respect to regex used in tokenizer_exceptions.py
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [X] I have submitted the spaCy Contributor Agreement.
- [X] I ran the tests, and all new and existing tests passed.
- [X] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Set version to 2.0.13
* Fix formatting and consistency
* Update docs for new version [ci skip]
* Increment version [ci skip]
* Add info on wheels [ci skip]
* Adding "This is a sentence" example to Sinhala (#2846)
* Add wheels badge
* Update badge [ci skip]
* Update README.rst [ci skip]
* Update murmurhash pin
* Increment version to 2.0.14.dev0
* Update GPU docs for v2.0.14
* Add wheel to setup_requires
* Import prefer_gpu and require_gpu functions from Thinc
* Add tests for prefer_gpu() and require_gpu()
* Update requirements and setup.py
* Workaround bug in thinc require_gpu
* Set version to v2.0.14
* Update push-tag script
* Unhack prefer_gpu
* Require thinc 6.10.6
* Update prefer_gpu and require_gpu docs [ci skip]
* Fix specifiers for GPU
* Set version to 2.0.14.dev1
* Set version to 2.0.14
* Update Thinc version pin
* Increment version
* Fix msgpack-numpy version pin
* Increment version
* Update version to 2.0.16
* Update version [ci skip]
* Redundant ')' in the Stop words' example (#2856)
<!--- Provide a general summary of your changes in the title. -->
## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->
### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [ ] I have submitted the spaCy Contributor Agreement.
- [ ] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Documentation improvement regarding joblib and SO (#2867)
Some documentation improvements
## Description
1. Fixed the dead URL to joblib
2. Fixed Stack Overflow brand name (with space)
### Types of change
Documentation
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* raise error when setting overlapping entities as doc.ents (#2880)
* Fix out-of-bounds access in NER training
The helper method state.B(1) gets the index of the first token of the
buffer, or -1 if no such token exists. Normally this is safe because we
pass this to functions like state.safe_get(), which returns an empty
token. Here we used it directly as an array index, which is not okay!
This error may have been the cause of out-of-bounds access errors during
training. Similar errors may still be around, so much be hunted down.
Hunting this one down took a long time...I printed out values across
training runs and diffed, looking for points of divergence between
runs, when no randomness should be allowed.
* Change PyThaiNLP Url (#2876)
* Fix missing comma
* Add example showing a fix-up rule for space entities
* Set version to 2.0.17.dev0
* Update regex version
* Revert "Update regex version"
This reverts commit 62358dd867.
* Try setting older regex version, to align with conda
* Set version to 2.0.17
* Add spacy-js to universe [ci-skip]
* Add spacy-raspberry to universe (closes#2889)
* Add script to validate universe json [ci skip]
* Removed space in docs + added contributor indo (#2909)
* - removed unneeded space in documentation
* - added contributor info
* Allow input text of length up to max_length, inclusive (#2922)
* Include universe spec for spacy-wordnet component (#2919)
* feat: include universe spec for spacy-wordnet component
* chore: include spaCy contributor agreement
* Minor formatting changes [ci skip]
* Fix image [ci skip]
Twitter URL doesn't work on live site
* Check if the word is in one of the regular lists specific to each POS (#2886)
* 💫 Create random IDs for SVGs to prevent ID clashes (#2927)
Resolves#2924.
## Description
Fixes problem where multiple visualizations in Jupyter notebooks would have clashing arc IDs, resulting in weirdly positioned arc labels. Generating a random ID prefix so even identical parses won't receive the same IDs for consistency (even if effect of ID clash isn't noticable here.)
### Types of change
bug fix
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Fix typo [ci skip]
* fixes symbolic link on py3 and windows (#2949)
* fixes symbolic link on py3 and windows
during setup of spacy using command
python -m spacy link en_core_web_sm en
closes#2948
* Update spacy/compat.py
Co-Authored-By: cicorias <cicorias@users.noreply.github.com>
* Fix formatting
* Update universe [ci skip]
* Catalan Language Support (#2940)
* Catalan language Support
* Ddding Catalan to documentation
* Sort languages alphabetically [ci skip]
* Update tests for pytest 4.x (#2965)
<!--- Provide a general summary of your changes in the title. -->
## Description
- [x] Replace marks in params for pytest 4.0 compat ([see here](https://docs.pytest.org/en/latest/deprecations.html#marks-in-pytest-mark-parametrize))
- [x] Un-xfail passing tests (some fixes in a recent update resolved a bunch of issues, but tests were apparently never updated here)
### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Fix regex pin to harmonize with conda (#2964)
* Update README.rst
* Fix bug where Vocab.prune_vector did not use 'batch_size' (#2977)
Fixes#2976
* Fix typo
* Fix typo
* Remove duplicate file
* Require thinc 7.0.0.dev2
Fixes bug in gpu_ops that would use cupy instead of numpy on CPU
* Add missing import
* Fix error IDs
* Fix tests
