* Added ENT_ID and ENT_KB_ID into the list of the attributes that Matcher matches on
* Added ENT_ID and ENT_KB_ID to TEST_PATTERNS in test_pattern_validation.py. Disabled tests that I added before
* Update website/docs/api/matcher.md
* Format
* Remove skipped tests
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add note on batch contract
Using listeners requires batches to be consistent. This is obvious if
you understand how the listener works, but it wasn't clearly stated in
the Docs, and was subtle enough that the EntityLinker missed it.
There is probably a clearer way to explain what the actual requirement
is, but I figure this is a good start.
* Rewrite to clarify role of caching
* Clarify how to fill in init_tok2vec after pretraining
* Ignore init_tok2vec arg in pretraining
* Update docs, config setting
* Remove obsolete note about not filling init_tok2vec early
This seems to have also caught some lines that needed cleanup.
* Clarify error when words are of wrong type
See #9437
* Update docs
* Use try/except
* Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add section for spacy.cli.train.train
* Add link from training page to train function
* Ensure path in train helper
* Update docs
Co-authored-by: Ines Montani <ines@ines.io>
* Add micro PRF for morph scoring
For pipelines where morph features are added by more than one component
and a reference training corpus may not contain all features, a micro
PRF score is more flexible than a simple accuracy score. An example is
the reading and inflection features added by the Japanese tokenizer.
* Use `morph_micro_f` as the default morph score for Japanese
morphologizers.
* Update docstring
* Fix typo in docstring
* Update Scorer API docs
* Fix results type
* Organize score list by attribute prefix
* Add support for fasttext-bloom hash-only vectors
Overview:
* Extend `Vectors` to have two modes: `default` and `ngram`
* `default` is the default mode and equivalent to the current
`Vectors`
* `ngram` supports the hash-only ngram tables from `fasttext-bloom`
* Extend `spacy.StaticVectors.v2` to handle both modes with no changes
for `default` vectors
* Extend `spacy init vectors` to support ngram tables
The `ngram` mode **only** supports vector tables produced by this
fork of fastText, which adds an option to represent all vectors using
only the ngram buckets table and which uses the exact same ngram
generation algorithm and hash function (`MurmurHash3_x64_128`).
`fasttext-bloom` produces an additional `.hashvec` table, which can be
loaded by `spacy init vectors --fasttext-bloom-vectors`.
https://github.com/adrianeboyd/fastText/tree/feature/bloom
Implementation details:
* `Vectors` now includes the `StringStore` as `Vectors.strings` so that
the API can stay consistent for both `default` (which can look up from
`str` or `int`) and `ngram` (which requires `str` to calculate the
ngrams).
* In ngram mode `Vectors` uses a default `Vectors` object as a cache
since the ngram vectors lookups are relatively expensive.
* The default cache size is the same size as the provided ngram vector
table.
* Once the cache is full, no more entries are added. The user is
responsible for managing the cache in cases where the initial
documents are not representative of the texts.
* The cache can be resized by setting `Vectors.ngram_cache_size` or
cleared with `vectors._ngram_cache.clear()`.
* The API ends up a bit split between methods for `default` and for
`ngram`, so functions that only make sense for `default` or `ngram`
include warnings with custom messages suggesting alternatives where
possible.
* `Vocab.vectors` becomes a property so that the string stores can be
synced when assigning vectors to a vocab.
* `Vectors` serializes its own config settings as `vectors.cfg`.
* The `Vectors` serialization methods have added support for `exclude`
so that the `Vocab` can exclude the `Vectors` strings while serializing.
Removed:
* The `minn` and `maxn` options and related code from
`Vocab.get_vector`, which does not work in a meaningful way for default
vector tables.
* The unused `GlobalRegistry` in `Vectors`.
* Refactor to use reduce_mean
Refactor to use reduce_mean and remove the ngram vectors cache.
* Rename to floret
* Rename to floret in error messages
* Use --vectors-mode in CLI, vector init
* Fix vectors mode in init
* Remove unused var
* Minor API and docstrings adjustments
* Rename `--vectors-mode` to `--mode` in `init vectors` CLI
* Rename `Vectors.get_floret_vectors` to `Vectors.get_batch` and support
both modes.
* Minor updates to Vectors docstrings.
* Update API docs for Vectors and init vectors CLI
* Update types for StaticVectors
* Add the spacy.models_with_nvtx_range.v1 callback
This callback recursively adds NVTX ranges to the Models in each pipe in
a pipeline.
* Fix create_models_with_nvtx_range type signature
* NVTX range: wrap models of all trainable pipes jointly
This avoids that (sub-)models that are shared between pipes get wrapped
twice.
* NVTX range callback: make color configurable
Add forward_color and backprop_color options to set the color for the
NVTX range.
* Move create_models_with_nvtx_range to spacy.ml
* Update create_models_with_nvtx_range for thinc changes
with_nvtx_range now updates an existing node, rather than returning a
wrapper node. So, we can simply walk over the nodes and update them.
* NVTX: use after_pipeline_creation in example
* 🚨 Ignore all existing Mypy errors
* 🏗 Add Mypy check to CI
* Add types-mock and types-requests as dev requirements
* Add additional type ignore directives
* Add types packages to dev-only list in reqs test
* Add types-dataclasses for python 3.6
* Add ignore to pretrain
* 🏷 Improve type annotation on `run_command` helper
The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.
* 🔧 Allow variable type redefinition in limited contexts
These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:
```python
def process(items: List[str]) -> None:
# 'items' has type List[str]
items = [item.split() for item in items]
# 'items' now has type List[List[str]]
...
```
This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`
These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.
* 🏷 Add type annotation to converters mapping
* 🚨 Fix Mypy error in convert CLI argument verification
* 🏷 Improve type annotation on `resolve_dot_names` helper
* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`
* 🏷 Add type annotations for more `Vocab` attributes
* 🏷 Add loose type annotation for gold data compilation
* 🏷 Improve `_format_labels` type annotation
* 🏷 Fix `get_lang_class` type annotation
* 🏷 Loosen return type of `Language.evaluate`
* 🏷 Don't accept `Scorer` in `handle_scores_per_type`
* 🏷 Add `string_to_list` overloads
* 🏷 Fix non-Optional command-line options
* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`
* ➕ Install `typing_extensions` in Python 3.8+
The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.
Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.
These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.
* 🏷 Improve type annotation for `Language.pipe`
These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.
Fixes#8772
* ➖ Don't install `typing-extensions` in Python 3.8+
After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉
These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.
* resolve mypy errors for Strict pydantic types
* refactor code to avoid missing return statement
* fix types of convert CLI command
* avoid list-set confustion in debug_data
* fix typo and formatting
* small fixes to avoid type ignores
* fix types in profile CLI command and make it more efficient
* type fixes in projects CLI
* put one ignore back
* type fixes for render
* fix render types - the sequel
* fix BaseDefault in language definitions
* fix type of noun_chunks iterator - yields tuple instead of span
* fix types in language-specific modules
* 🏷 Expand accepted inputs of `get_string_id`
`get_string_id` accepts either a string (in which case it returns its
ID) or an ID (in which case it immediately returns the ID). These
changes extend the type annotation of `get_string_id` to indicate that
it can accept either strings or IDs.
* 🏷 Handle override types in `combine_score_weights`
The `combine_score_weights` function allows users to pass an `overrides`
mapping to override data extracted from the `weights` argument. Since it
allows `Optional` dictionary values, the return value may also include
`Optional` dictionary values.
These changes update the type annotations for `combine_score_weights` to
reflect this fact.
* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`
* 🏷 Fix redefinition of `wandb_logger`
These changes fix the redefinition of `wandb_logger` by giving a
separate name to each `WandbLogger` version. For
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3`
as `wandb_logger` for now.
* more fixes for typing in language
* type fixes in model definitions
* 🏷 Annotate `_RandomWords.probs` as `NDArray`
* 🏷 Annotate `tok2vec` layers to help Mypy
* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6
Also remove an import that I forgot to move to the top of the module 😅
* more fixes for matchers and other pipeline components
* quick fix for entity linker
* fixing types for spancat, textcat, etc
* bugfix for tok2vec
* type annotations for scorer
* add runtime_checkable for Protocol
* type and import fixes in tests
* mypy fixes for training utilities
* few fixes in util
* fix import
* 🐵 Remove unused `# type: ignore` directives
* 🏷 Annotate `Language._components`
* 🏷 Annotate `spacy.pipeline.Pipe`
* add doc as property to span.pyi
* small fixes and cleanup
* explicit type annotations instead of via comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
* use language-matching to allow language code aliases
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* link to "IETF language tags" in docs
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* Make requirements consistent
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* change "two-letter language ID" to "IETF language tag" in language docs
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* use langcodes 3.2 and handle language-tag errors better
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* all unknown language codes are ImportErrors
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
* factor out the WandB logger into spacy-loggers
Signed-off-by: Elia Robyn Speer <gh@arborelia.net>
* depend on spacy-loggers so they are available
Signed-off-by: Elia Robyn Speer <gh@arborelia.net>
* remove docs of spacy.WandbLogger.v2 (moved to spacy-loggers)
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* Version number suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* update references to WandbLogger
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* make order of deps more consistent
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add textcat docs
* Add NER docs
* Add Entity Linker docs
* Add assigned fields docs for the tagger
This also adds a preamble, since there wasn't one.
* Add morphologizer docs
* Add dependency parser docs
* Update entityrecognizer docs
This is a little weird because `Doc.ents` is the only thing assigned to,
but it's actually a bidirectional property.
* Add token fields for entityrecognizer
* Fix section name
* Add entity ruler docs
* Add lemmatizer docs
* Add sentencizer/recognizer docs
* Update website/docs/api/entityrecognizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/entityruler.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/tagger.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/entityruler.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update type for Doc.ents
This was `Tuple[Span, ...]` everywhere but `Tuple[Span]` seems to be
correct.
* Run prettier
* Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Run prettier
* Add transformers section
This basically just moves and renames the "custom attributes" section
from the bottom of the page to be consistent with "assigned attributes"
on other pages.
I looked at moving the paragraph just above the section into the
section, but it includes the unrelated registry additions, so it seemed
better to leave it unchanged.
* Make table header consistent
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* test for error after Doc has been garbage collected
* warn about using a SpanGroup when the Doc has been garbage collected
* add warning to the docs
* rephrase slightly
* raise error instead of warning
* update
* move warning to doc property
* Add training data section
Not entirely sure this is in the right location on the page - maybe it
should be after quickstart?
* Add pointer from binary format to training data section
* Minor cleanup
* Add to ToC, fix filename
* Update website/docs/usage/training.md
Co-authored-by: Ines Montani <ines@ines.io>
* Update website/docs/usage/training.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update website/docs/usage/training.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Move the training data section further down the page
* Update website/docs/usage/training.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update website/docs/usage/training.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Run prettier
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow passing in array vars for speedup
This fixes#8845. Not sure about the docstring changes here...
* Update docs
Types maybe need more detail? Maybe not?
* Run prettier on docs
* Update spacy/tokens/span.pyx
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add scores to output in spancat
This exposes the scores as an attribute on the SpanGroup. Includes a
basic test.
* Add basic doc note
* Vectorize score calcs
* Add "annotation format" section
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Clean up doc section
* Ran prettier on docs
* Get arrays off the gpu before iterating over them
* Remove int() calls
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Support list values and IS_INTERSECT in Matcher
* Support list values as token attributes for set operators, not just as
pattern values.
* Add `IS_INTERSECT` operator.
* Fix incorrect `ISSUBSET` and `ISSUPERSET` in schema and docs.
* Rename IS_INTERSECT to INTERSECTS
* Raise an error for textcat with <2 labels
Raise an error if initializing a `textcat` component without at least
two labels.
* Add similar note to docs
* Update positive_label description in API docs
* Draft spancat model
* Add spancat model
* Add test for extract_spans
* Add extract_spans layer
* Upd extract_spans
* Add spancat model
* Add test for spancat model
* Upd spancat model
* Update spancat component
* Upd spancat
* Update spancat model
* Add quick spancat test
* Import SpanCategorizer
* Fix SpanCategorizer component
* Import SpanGroup
* Fix span extraction
* Fix import
* Fix import
* Upd model
* Update spancat models
* Add scoring, update defaults
* Update and add docs
* Fix type
* Update spacy/ml/extract_spans.py
* Auto-format and fix import
* Fix comment
* Fix type
* Fix type
* Update website/docs/api/spancategorizer.md
* Fix comment
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Better defense
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix labels list
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/ml/extract_spans.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Set annotations during update
* Set annotations in spancat
* fix imports in test
* Update spacy/pipeline/spancat.py
* replace MaxoutLogistic with LinearLogistic
* fix config
* various small fixes
* remove set_annotations parameter in update
* use our beloved tupley format with recent support for doc.spans
* bugfix to allow renaming the default span_key (scores weren't showing up)
* use different key in docs example
* change defaults to better-working parameters from project (WIP)
* register spacy.extract_spans.v1 for legacy purposes
* Upd dev version so can build wheel
* layers instead of architectures for smaller building blocks
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Include additional scores from overrides in combined score weights
* Parameterize spans key in scoring
Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.
* Use the (intentionally very short) default spans key `sc` in the
`SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
the key in the `getter` instead.
Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.
* Update website/docs/api/scorer.md
* Fix scorer for spans key containing underscore
* Increment version
* Add Spans to Evaluate CLI (#8439)
* Add Spans to Evaluate CLI
* Change to spans_key
* Add spans per_type output
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix spancat GPU issues (#8455)
* Fix GPU issues
* Require thinc >=8.0.6
* Switch to glorot_uniform_init
* Fix and test ngram suggester
* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
* Support a cfg field in transition system
* Make NER 'has gold' check use right alignment for span
* Pass 'negative_samples_key' property into NER transition system
* Add field for negative samples to NER transition system
* Check neg_key in NER has_gold
* Support negative examples in NER oracle
* Test for negative examples in NER
* Fix name of config variable in NER
* Remove vestiges of old-style partial annotation
* Remove obsolete tests
* Add comment noting lack of support for negative samples in parser
* Additions to "neg examples" PR (#8201)
* add custom error and test for deprecated format
* add test for unlearning an entity
* add break also for Begin's cost
* add negative_samples_key property on Parser
* rename
* extend docs & fix some older docs issues
* add subclass constructors, clean up tests, fix docs
* add flaky test with ValueError if gold parse was not found
* remove ValueError if n_gold == 0
* fix docstring
* Hack in environment variables to try out training
* Remove hack
* Remove NER hack, and support 'negative O' samples
* Fix O oracle
* Fix transition parser
* Remove 'not O' from oracle
* Fix NER oracle
* check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation
* use set instead of list in consistency check
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* implement textcat resizing for TextCatCNN
* resizing textcat in-place
* simplify code
* ensure predictions for old textcat labels remain the same after resizing (WIP)
* fix for softmax
* store softmax as attr
* fix ensemble weight copy and cleanup
* restructure slightly
* adjust documentation, update tests and quickstart templates to use latest versions
* extend unit test slightly
* revert unnecessary edits
* fix typo
* ensemble architecture won't be resizable for now
* use resizable layer (WIP)
* revert using resizable layer
* resizable container while avoid shape inference trouble
* cleanup
* ensure model continues training after resizing
* use fill_b parameter
* use fill_defaults
* resize_layer callback
* format
* bump thinc to 8.0.4
* bump spacy-legacy to 3.0.6
* Update cats score names in Scorer API docs
* Refer to performance in meta
* Update package naming/versions, lemmatizer details
* Minor formatting fixes
* Provide more explanation for cats_score_desc
* Provide language-specific lemmatizer defaults in API docs
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
* unit test for pickling KB
* add pickling test for NEL
* KB to_bytes and from_bytes
* NEL to_bytes and from_bytes
* xfail pickle tests for now
* fix docs
* cleanup
* Add training option to set annotations on update
Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.
* Rename to annotates / annotating_components
* Add test for `annotating_components` when training from config
* Add documentation
* Add callback to copy vocab/tokenizer from model
Add callback `spacy.copy_from_base_model.v1` to copy the tokenizer
settings and/or vocab (including vectors) from a base model.
* Move spacy.copy_from_base_model.v1 to spacy.training.callbacks
* Add documentation
* Modify to specify model as tokenizer and vocab params
* Update sent_starts in Example.from_dict
Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.
Use `Optional[bool]` as the type for sent start values in the docs.
* Use helper function for conversion to ternary ints
* Replace negative rows with 0 in StaticVectors
Replace negative row indices with 0-vectors in `StaticVectors`.
* Increase versions related to StaticVectors
* Increase versions of all architctures and layers related to
`StaticVectors`
* Improve efficiency of 0-vector operations
Parallel `spacy-legacy` PR: https://github.com/explosion/spacy-legacy/pull/5
* Update config defaults to new versions
* Update docs
* extend span scorer with consider_label and allow_overlap
* unit test for spans y2x overlap
* add score_spans unit test
* docs for new fields in scorer.score_spans
* rename to include_label
* spell out if-else for clarity
* rename to 'labeled'
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Support match alignments
* change naming from match_alignments to with_alignments, add conditional flow if with_alignments is given, validate with_alignments, add related test case
* remove added errors, utilize bint type, cleanup whitespace
* fix no new line in end of file
* Minor formatting
* Skip alignments processing if as_spans is set
* Add with_alignments to Matcher API docs
* Update website/docs/api/matcher.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* add multi-label textcat to menu
* add infobox on textcat API
* add info to v3 migration guide
* small edits
* further fixes in doc strings
* add infobox to textcat architectures
* add textcat_multilabel to overview of built-in components
* spelling
* fix unrelated warn msg
* Add textcat_multilabel to quickstart [ci skip]
* remove separate documentation page for multilabel_textcategorizer
* small edits
* positive label clarification
* avoid duplicating information in self.cfg and fix textcat.score
* fix multilabel textcat too
* revert threshold to storage in cfg
* revert threshold stuff for multi-textcat
Co-authored-by: Ines Montani <ines@ines.io>
* initialize NLP with train corpus
* add more pretraining tests
* more tests
* function to fetch tok2vec layer for pretraining
* clarify parameter name
* test different objectives
* formatting
* fix check for static vectors when using vectors objective
* clarify docs
* logger statement
* fix init_tok2vec and proc.initialize order
* test training after pretraining
* add init_config tests for pretraining
* pop pretraining block to avoid config validation errors
* custom errors
* Add regression test
* Run PhraseMatcher on Spans
* Add test for PhraseMatcher on Spans and Docs
* Add SCA
* Add test with 3 matches in Doc, 1 match in Span
* Update docs
* Use doc.length for find_matches in tokenizer
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* add error handler for pipe methods
* add unit tests
* remove pipe method that are the same as their base class
* have Language keep track of a default error handler
* cleanup
* formatting
* small refactor
* add documentation
* raise NotImplementedError when noun_chunks iterator is not implemented
* bring back, fix and document span.noun_chunks
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add long_token_splitter component
Add a `long_token_splitter` component for use with transformer
pipelines. This component splits up long tokens like URLs into smaller
tokens. This is particularly relevant for pretrained pipelines with
`strided_spans`, since the user can't change the length of the span
`window` and may not wish to preprocess the input texts.
The `long_token_splitter` splits tokens that are at least
`long_token_length` tokens long into smaller tokens of `split_length`
size.
Notes:
* Since this is intended for use as the first component in a pipeline,
the token splitter does not try to preserve any token annotation.
* API docs to come when the API is stable.
* Adjust API, add test
* Fix name in factory
* Handle unset token.morph in Morphologizer
Handle unset `token.morph` in `Morphologizer.initialize` and
`Morphologizer.get_loss`. If both `token.morph` and `token.pos` are
unset, treat the annotation as missing rather than empty.
* Add token.has_morph()
* Draft out initial Spans data structure
* Initial span group commit
* Basic span group support on Doc
* Basic test for span group
* Compile span_group.pyx
* Draft addition of SpanGroup to DocBin
* Add deserialization for SpanGroup
* Add tests for serializing SpanGroup
* Fix serialization of SpanGroup
* Add EdgeC and GraphC structs
* Add draft Graph data structure
* Compile graph
* More work on Graph
* Update GraphC
* Upd graph
* Fix walk functions
* Let Graph take nodes and edges on construction
* Fix walking and getting
* Add graph tests
* Fix import
* Add module with the SpanGroups dict thingy
* Update test
* Rename 'span_groups' attribute
* Try to fix c++11 compilation
* Fix test
* Update DocBin
* Try to fix compilation
* Try to fix graph
* Improve SpanGroup docstrings
* Add doc.spans to documentation
* Fix serialization
* Tidy up and add docs
* Update docs [ci skip]
* Add SpanGroup.has_overlap
* WIP updated Graph API
* Start testing new Graph API
* Update Graph tests
* Update Graph
* Add docstring
Co-authored-by: Ines Montani <ines@ines.io>
* fix TorchBiLSTMEncoder documentation
* ensure the types of the encoding Tok2vec layers are correct
* update references from v1 to v2 for the new architectures
* multi-label textcat component
* formatting
* fix comment
* cleanup
* fix from #6481
* random edit to push the tests
* add explicit error when textcat is called with multi-label gold data
* fix error nr
* small fix
Remove the non-working `--use-chars` option from the train CLI. The
implementation of the option across component types and the CLI settings
could be fixed, but the `CharacterEmbed` model does not work on GPU in
v2 so it's better to remove it.
* Handle missing reference values in scorer
Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.
Attributes without unset states:
* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation
Additional changes:
* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`
* Fix import
* Update return types
* small fix in example imports
* throw error when train_corpus or dev_corpus is not a string
* small fix in custom logger example
* limit macro_auc to labels with 2 annotations
* fix typo
* also create parents of output_dir if need be
* update documentation of textcat scores
* refactor TextCatEnsemble
* fix tests for new AUC definition
* bump to 3.0.0a42
* update docs
* rename to spacy.TextCatEnsemble.v2
* spacy.TextCatEnsemble.v1 in legacy
* cleanup
* small fix
* update to 3.0.0rc2
* fix import that got lost in merge
* cursed IDE
* fix two typos
* rename Pipe to TrainablePipe
* split functionality between Pipe and TrainablePipe
* remove unnecessary methods from certain components
* cleanup
* hasattr(component, "pipe") should be sufficient again
* remove serialization and vocab/cfg from Pipe
* unify _ensure_examples and validate_examples
* small fixes
* hasattr checks for self.cfg and self.vocab
* make is_resizable and is_trainable properties
* serialize strings.json instead of vocab
* fix KB IO + tests
* fix typos
* more typos
* _added_strings as a set
* few more tests specifically for _added_strings field
* bump to 3.0.0a36
