Commit Graph

163 Commits

Author SHA1 Message Date
Matthew Honnibal
7b3f0c6f1b
Questionable fix for parser training bug with misaligned sentences (#6694)
* Questionable fix for parser training bug with misaligned sentences

* Fix

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-01-15 14:18:24 +01:00
Ines Montani
e8a97a2bd6
Merge pull request #6720 from adrianeboyd/feature/improved-init-training-config-validation 2021-01-15 11:45:24 +11:00
Adriane Boyd
681a6195f7 Validate seed and gpu_allocator manually 2021-01-14 16:57:57 +01:00
svlandeg
fec9b81aa2 Merge remote-tracking branch 'upstream/develop' into feature/missing-dep 2021-01-13 17:46:12 +01:00
svlandeg
ed53bb979d cleanup 2021-01-13 14:20:05 +01:00
svlandeg
86a4e316b8 fix sent_starts 2021-01-13 13:47:25 +01:00
svlandeg
a581d82f33 introduce token.has_head and refer to MISSING_DEP_ (WIP) 2021-01-12 17:17:06 +01:00
Adriane Boyd
5fb8b7037a Expand initialize/training config validation
Validate both `[initialize]` and `[training]` in `debug data` and
`nlp.initialize()` with separate config validation error blocks that
indicate which block of the config is being validated.
2021-01-12 17:17:00 +01:00
Matthew Honnibal
c04bab6bae
Fix train loop to avoid swallowing tracebacks (#6693)
* Avoid swallowing tracebacks in train loop

* Format

* Handle first
2021-01-09 08:25:47 +08:00
svlandeg
dd12c6c8fd allow missing information in deps and heads annotations 2021-01-07 19:10:32 +01:00
Bruno
1a77607036
spaCy v3 is not saving the best version in training loop (#6629)
* Save best only if is the best and also respect the average config

* Create bratao.md

* Update loop.py

* Remove average check

* Keep before_to_disk
2021-01-06 12:51:30 +11:00
Ines Montani
991669c934 Tidy up and auto-format 2021-01-05 13:41:53 +11:00
Adriane Boyd
b57be94c78
Fix memory issues in Language.evaluate (#6386)
* Fix memory issues in Language.evaluate

Reset annotation in predicted docs before evaluating and store all data
in `examples`.

* Minor refactor to docs generator init

* Fix generator expression

* Fix final generator check

* Refactor pipeline loop

* Handle examples generator in Language.evaluate

* Add test with generator

* Use make_doc
2020-12-31 10:45:50 +11:00
Adriane Boyd
1ddf2f39c7
Switch converters to generator functions (#6547)
* Switch converters to generator functions

To reduce the memory usage when converting large corpora, refactor the
convert methods to be generator functions.

* Update tests
2020-12-15 16:47:16 +08:00
Matthew Honnibal
8656a08777
Add beam_parser and beam_ner components for v3 (#6369)
* Get basic beam tests working

* Get basic beam tests working

* Compile _beam_utils

* Remove prints

* Test beam density

* Beam parser seems to train

* Draft beam NER

* Upd beam

* Add hypothesis as dev dependency

* Implement missing is-gold-parse method

* Implement early update

* Fix state hashing

* Fix test

* Fix test

* Default to non-beam in parser constructor

* Improve oracle for beam

* Start refactoring beam

* Update test

* Refactor beam

* Update nn

* Refactor beam and weight by cost

* Update ner beam settings

* Update test

* Add __init__.pxd

* Upd test

* Fix test

* Upd test

* Fix test

* Remove ring buffer history from StateC

* WIP change arc-eager transitions

* Add state tests

* Support ternary sent start values

* Fix arc eager

* Fix NER

* Pass oracle cut size for beam

* Fix ner test

* Fix beam

* Improve StateC.clone

* Improve StateClass.borrow

* Work directly with StateC, not StateClass

* Remove print statements

* Fix state copy

* Improve state class

* Refactor parser oracles

* Fix arc eager oracle

* Fix arc eager oracle

* Use a vector to implement the stack

* Refactor state data structure

* Fix alignment of sent start

* Add get_aligned_sent_starts method

* Add test for ae oracle when bad sentence starts

* Fix sentence segment handling

* Avoid Reduce that inserts illegal sentence

* Update preset SBD test

* Fix test

* Remove prints

* Fix sent starts in Example

* Improve python API of StateClass

* Tweak comments and debug output of arc eager

* Upd test

* Fix state test

* Fix state test
2020-12-13 09:08:32 +08:00
Sofie Van Landeghem
de108ed3e8
Add specific error when StaticVectors can't read the vectors data (#6450) 2020-12-09 06:16:07 +08:00
Ines Montani
6cfa66ed1c
Make training.loop return nlp object and path (#6520) 2020-12-08 14:55:55 +08:00
Sofie Van Landeghem
f98a04434a
pretrain architectures (#6451)
* define new architectures for the pretraining objective

* add loss function as attr of the omdel

* cleanup

* cleanup

* shorten name

* fix typo

* remove unused error
2020-12-08 14:41:03 +08:00
Adriane Boyd
4448680750
Fix alignment for 1-to-1 tokens and lowercasing (#6476)
* When checking for token alignments, check not only that the tokens are
identical but that the character positions are both at the start of a
token.

  It's possible for the tokens to be identical even though the two
tokens aren't aligned one-to-one in a case like `["a'", "''"]` vs.
`["a", "''", "'"]`, where the middle tokens are identical but should not
be aligned on the token level at character position 2 since it's the
start of one token but the middle of another.

* Use the lowercased version of the token texts to create the
character-to-token alignment because lowercasing can change the string
length (e.g., for `İ`, see the not-a-bug bug report:
https://bugs.python.org/issue34723)
2020-12-08 14:25:16 +08:00
Sofie Van Landeghem
079f6ea474
avoid resolving the full config (#6465) 2020-11-30 09:34:29 +08:00
Adriane Boyd
1c4df8fd09
Replace pytokenizations with internal alignment (#6293)
* Replace pytokenizations with internal alignment

Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.

* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`

* Refactor trailing whitespace handling

* Remove unnecessary exception for empty docs

Allow a non-empty whitespace-only doc to be aligned with an empty doc

* Remove empty docs exceptions completely
2020-11-03 16:24:38 +01:00
Sofie Van Landeghem
2918923541
fix resolving of dot notation (#6326) 2020-10-31 12:17:06 +01:00
Sofie Van Landeghem
75a202ce65
TextCat updates and fixes (#6263)
* small fix in example imports

* throw error when train_corpus or dev_corpus is not a string

* small fix in custom logger example

* limit macro_auc to labels with 2 annotations

* fix typo

* also create parents of output_dir if need be

* update documentation of textcat scores

* refactor TextCatEnsemble

* fix tests for new AUC definition

* bump to 3.0.0a42

* update docs

* rename to spacy.TextCatEnsemble.v2

* spacy.TextCatEnsemble.v1 in legacy

* cleanup

* small fix

* update to 3.0.0rc2

* fix import that got lost in merge

* cursed IDE

* fix two typos
2020-10-18 14:50:41 +02:00
Ines Montani
ff4267d181 Fix success message [ci skip] 2020-10-15 14:42:08 +02:00
Adriane Boyd
a93d42861d Use null raw for has_unknown_spaces in docs_to_json 2020-10-15 09:57:54 +02:00
Ines Montani
ab890a35f9 Make console logger table more compact 2020-10-11 12:55:46 +02:00
Ines Montani
8ac5f22253 Adjust error message 2020-10-09 18:00:16 +02:00
svlandeg
18dfb27985 Add custom error when evaluation throws a KeyError 2020-10-09 12:05:33 +02:00
Sofie Van Landeghem
d093d6343b
TrainablePipe (#6213)
* rename Pipe to TrainablePipe

* split functionality between Pipe and TrainablePipe

* remove unnecessary methods from certain components

* cleanup

* hasattr(component, "pipe") should be sufficient again

* remove serialization and vocab/cfg from Pipe

* unify _ensure_examples and validate_examples

* small fixes

* hasattr checks for self.cfg and self.vocab

* make is_resizable and is_trainable properties

* serialize strings.json instead of vocab

* fix KB IO + tests

* fix typos

* more typos

* _added_strings as a set

* few more tests specifically for _added_strings field

* bump to 3.0.0a36
2020-10-08 21:33:49 +02:00
Ines Montani
568e12215d
Merge pull request #6206 from svlandeg/fix/patterns-init 2020-10-06 10:27:23 +02:00
Ines Montani
126268ce50 Auto-format [ci skip] 2020-10-05 21:58:18 +02:00
Ines Montani
be99f1e4de
Remove output dirs before training (#6204)
* Remove output dirs before training

* Re-raise error if cleaning fails
2020-10-05 20:11:16 +02:00
svlandeg
9eb813a35d Merge remote-tracking branch 'upstream/develop' into fix/patterns-init 2020-10-05 17:49:44 +02:00
svlandeg
4e3ace4b8c is_trainable method 2020-10-05 17:43:42 +02:00
Matthew Honnibal
3ee3649b52 Fix augment 2020-10-05 16:59:49 +02:00
Matthew Honnibal
8deed614e9 Fix augment 2020-10-05 16:41:45 +02:00
Matthew Honnibal
4ed3e037df Fix augment 2020-10-05 16:40:55 +02:00
svlandeg
dc06912c76 prevent loss keyerror for non-trainable components 2020-10-05 16:33:28 +02:00
Ines Montani
8171e28b20 Remove logging [ci skip]
This would be fired on each example, which is wrong
2020-10-05 15:09:52 +02:00
svlandeg
251b3eb4e5 add initialize method for entity_ruler 2020-10-05 14:59:13 +02:00
Matthew Honnibal
6a9d14e35a Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-10-05 14:17:41 +02:00
Matthew Honnibal
d2b9aafb8c Fix augmenter 2020-10-05 14:14:49 +02:00
svlandeg
fd2d48556c fix E902 and E903 numbering 2020-10-05 13:43:32 +02:00
Ines Montani
3c36a57e84
Update data augmenters (#6196)
* Draft lower-case augmenter

* Make warning a debug log

* Update lowercase augmenter, docs and tests

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-10-04 17:46:29 +02:00
Matthew Honnibal
84ae197dd6 Fix logger 2020-10-04 14:16:53 +02:00
Ines Montani
bcd52e5486 Tidy up errors and warnings 2020-10-04 11:16:31 +02:00
Ines Montani
ff914f4e6f Lazy-load xx 2020-10-04 11:10:26 +02:00
Matthew Honnibal
85ede32680 Format 2020-10-03 19:26:23 +02:00
Matthew Honnibal
b305f2ff5a Fix loggers 2020-10-03 19:26:10 +02:00
Ines Montani
3bc3c05fcc Tidy up and auto-format 2020-10-03 17:20:18 +02:00
Ines Montani
dd542ec6a4
Fix label initialization of textcat component (#6190) 2020-10-03 17:07:38 +02:00
Ines Montani
989a96308f Tidy up, auto-format, types 2020-10-03 16:31:58 +02:00
Matthew Honnibal
db419f6b2f
Improve control of training progress and logging (#6184)
* Make logging and progress easier to control

* Update docs

* Cleanup errors

* Fix ConfigValidationError

* Pass stdout/stderr, not wasabi.Printer

* Fix type

* Upd logging example

* Fix logger example

* Fix type
2020-10-03 14:57:46 +02:00
Ines Montani
01c1538c72 Integrate file readers 2020-10-02 01:36:06 +02:00
Adriane Boyd
86c3ec9c2b
Refactor Token morph setting (#6175)
* Refactor Token morph setting

* Remove `Token.morph_`
* Add `Token.set_morph()`
  * `0` resets `token.c.morph` to unset
  * Any other values are passed to `Morphology.add`

* Add token.morph setter to set from MorphAnalysis
2020-10-01 22:21:46 +02:00
Ines Montani
f2627157c8 Update docs [ci skip] 2020-10-01 17:38:17 +02:00
Adriane Boyd
27cbffff1b
Minor edit to CoNLL-U converter (#6172)
This doesn't make a difference given how the `merged_morph` values
override the `morph` values for all the final docs, but could have led
to unexpected bugs in the future if the converter is modified.
2020-10-01 16:23:42 +02:00
Adriane Boyd
df98d3ef9f
Update import from collections.abc (#6174) 2020-10-01 16:21:49 +02:00
Ines Montani
44160cd52f Tidy up [ci skip] 2020-10-01 10:41:19 +02:00
Ines Montani
a103ab5f1a Update augmenter lookups and docs 2020-09-30 23:03:47 +02:00
Matthew Honnibal
c379a4274a Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-09-30 16:52:42 +02:00
Matthew Honnibal
e58dca3028 Add read_labels 2020-09-30 16:52:27 +02:00
Ines Montani
fe3f111c37
Merge pull request #6168 from explosion/fix/default-corpus-values 2020-09-30 00:24:02 +02:00
Matthew Honnibal
f52249fe2e Fix data augmentation 2020-09-29 23:40:54 +02:00
Matthew Honnibal
14c4da547f Try to fix augmentation 2020-09-29 23:08:56 +02:00
Ines Montani
df8dd91b6f Merge branch 'develop' into fix/default-corpus-values 2020-09-29 22:55:39 +02:00
Ines Montani
ad6d40d028 Add logging 2020-09-29 22:53:14 +02:00
Ines Montani
1aeef3bfbb Make corpus paths default to None and improve errors 2020-09-29 22:33:46 +02:00
Ines Montani
fa47f87924 Tidy up and auto-format 2020-09-29 21:39:28 +02:00
Ines Montani
d3c63b7965 Merge branch 'develop' into feature/prepare 2020-09-29 20:53:05 +02:00
Ines Montani
2be80379ec Fix small issues, resolve_dot_names and debug model 2020-09-29 20:38:35 +02:00
Ines Montani
fd594cfb9b Tighten up format 2020-09-29 16:47:55 +02:00
Ines Montani
978ab54a84 Fix logging 2020-09-29 16:22:41 +02:00
Ines Montani
aa2a6882d0 Fix logging 2020-09-29 16:08:39 +02:00
Ines Montani
63d1598137 Simplify config use in Language.initialize 2020-09-29 16:05:48 +02:00
Ines Montani
612bbf85ab Update initialize.py 2020-09-29 12:14:47 +02:00
Ines Montani
42f0e4c946 Clean up 2020-09-29 12:14:08 +02:00
Ines Montani
78396d137f Integrate initialize settings 2020-09-29 11:57:08 +02:00
Ines Montani
4925ad760a Add init vectors 2020-09-29 10:58:50 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
Ines Montani
046f655d86 Fix error 2020-09-28 21:17:45 +02:00
Ines Montani
a139fe672b Fix typos and refactor CLI logging 2020-09-28 21:17:10 +02:00
Ines Montani
2e9c9e74af Fix config resolution and interpolation
TODO: auto-interpolate in Thinc if config is dict (i.e. likely subsection)
2020-09-28 15:34:00 +02:00
Ines Montani
822ea4ef61 Refactor CLI 2020-09-28 15:09:59 +02:00
Ines Montani
d5155376fd Update vocab init 2020-09-28 11:30:18 +02:00
Matthew Honnibal
a976da168c
Support data augmentation in Corpus (#6155)
* Support data augmentation in Corpus

* Note initial docs for data augmentation

* Add augmenter to quickstart

* Fix flake8

* Format

* Fix test

* Update spacy/tests/training/test_training.py

* Improve data augmentation arguments

* Update templates

* Move randomization out into caller

* Refactor

* Update spacy/training/augment.py

* Update spacy/tests/training/test_training.py

* Fix augment

* Fix test
2020-09-28 03:03:27 +02:00
Matthew Honnibal
13b1605ee6 Add init script 2020-09-28 01:08:49 +02:00
Matthew Honnibal
26afd3bd90 Fix iteration order 2020-09-25 21:47:22 +02:00
Matthew Honnibal
3d8388969e Sort paths for cache consistency 2020-09-25 19:07:26 +02:00
Sofie Van Landeghem
009ba14aaf
Fix pretraining in train script (#6143)
* update pretraining API in train CLI

* bump thinc to 8.0.0a35

* bump to 3.0.0a26

* doc fixes

* small doc fix
2020-09-25 15:47:10 +02:00
Matthew Honnibal
93d7ff309f Remove print 2020-09-24 21:05:27 +02:00
Matthew Honnibal
2abb4ba9db
Make a pre-check to speed up alignment cache (#6139)
* Dirty trick to fast-track alignment cache

* Improve alignment cache check

* Fix header

* Fix align cache

* Fix align logic
2020-09-24 18:13:39 +02:00
Ines Montani
58dde293ce
Merge pull request #6089 from adrianeboyd/feature/doc-ents-v3-2 2020-09-24 14:44:42 +02:00
Ines Montani
f69fea8b25 Improve error handling around non-number scores 2020-09-24 11:29:07 +02:00
Ines Montani
4eb39b5c43 Fix logging 2020-09-24 11:04:35 +02:00
svlandeg
20b0ec5dcf avoid logging performance of frozen components 2020-09-23 10:37:12 +02:00
Ines Montani
ae5dacf75f Tidy up and add types 2020-09-23 10:14:34 +02:00
svlandeg
4a56ea72b5 fallbacks for old names 2020-09-23 09:15:07 +02:00
Adriane Boyd
535842e483
Merge branch 'develop' into feature/doc-ents-v3-2 2020-09-22 13:45:50 +02:00
svlandeg
b556a10808 rename converts in_to_out 2020-09-22 11:50:19 +02:00