* Adjust custom extension data when copying user data in `Span.as_doc()`
* Restrict `Doc.from_docs()` to adjusting offsets for custom extension
data
* Update test to use extension
* (Duplicate bug fix for character offset from #7497)
Merge data from `doc.spans` in `Doc.from_docs()`.
* Fix internal character offset set when merging empty docs (only
affects tokens and spans in `user_data` if an empty doc is in the list
of docs)
In the retokenizer, only reset sent starts (with
`set_children_from_head`) if the doc is parsed. If there is no parse,
merged tokens have the unset `token.is_sent_start == None` by default after
retokenization.
* raise NotImplementedError when noun_chunks iterator is not implemented
* bring back, fix and document span.noun_chunks
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Draft out initial Spans data structure
* Initial span group commit
* Basic span group support on Doc
* Basic test for span group
* Compile span_group.pyx
* Draft addition of SpanGroup to DocBin
* Add deserialization for SpanGroup
* Add tests for serializing SpanGroup
* Fix serialization of SpanGroup
* Add EdgeC and GraphC structs
* Add draft Graph data structure
* Compile graph
* More work on Graph
* Update GraphC
* Upd graph
* Fix walk functions
* Let Graph take nodes and edges on construction
* Fix walking and getting
* Add graph tests
* Fix import
* Add module with the SpanGroups dict thingy
* Update test
* Rename 'span_groups' attribute
* Try to fix c++11 compilation
* Fix test
* Update DocBin
* Try to fix compilation
* Try to fix graph
* Improve SpanGroup docstrings
* Add doc.spans to documentation
* Fix serialization
* Tidy up and add docs
* Update docs [ci skip]
* Add SpanGroup.has_overlap
* WIP updated Graph API
* Start testing new Graph API
* Update Graph tests
* Update Graph
* Add docstring
Co-authored-by: Ines Montani <ines@ines.io>
Instead of unsetting lemmas on retokenized tokens, set the default
lemmas to:
* merge: concatenate any existing lemmas with `SPACY` preserved
* split: use the new `ORTH` values if lemmas were previously set,
otherwise leave unset
* Only set NORM on Token in retokenizer
Instead of setting `NORM` on both the token and lexeme, set `NORM` only
on the token.
The retokenizer tries to set all possible attributes with
`Token/Lexeme.set_struct_attr` so that it doesn't have to enumerate
which attributes are available for each. `NORM` is the only attribute
that's stored on both and for most cases it doesn't make sense to set
the global norms based on a individual retokenization. For lexeme-only
attributes like `IS_STOP` there's no way to avoid the global side
effects, but I think that `NORM` would be better only on the token.
* Fix test
* Refactor Token morph setting
* Remove `Token.morph_`
* Add `Token.set_morph()`
* `0` resets `token.c.morph` to unset
* Any other values are passed to `Morphology.add`
* Add token.morph setter to set from MorphAnalysis
In order to make it easier to construct `Doc` objects as training data,
modify how missing and blocked entity tokens are set to prioritize
setting `O` and missing entity tokens for training purposes over setting
blocked entity tokens.
* `Doc.ents` setter sets tokens outside entity spans to `O` regardless
of the current state of each token
* For `Doc.ents`, setting a span with a missing label sets the `ent_iob`
to missing instead of blocked
* `Doc.block_ents(spans)` marks spans as hard `O` for use with the
`EntityRecognizer`
* Refactor Docs.is_ flags
* Add derived `Doc.has_annotation` method
* `Doc.has_annotation(attr)` returns `True` for partial annotation
* `Doc.has_annotation(attr, require_complete=True)` returns `True` for
complete annotation
* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`
* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.
Notes on `Doc.has_annotation`:
* `HEAD` is converted to `DEP` because heads don't have an unset state
* Accept `IS_SENT_START` as a synonym of `SENT_START`
Additional changes:
* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`
* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`
* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`
* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`
* Fix call to set_children_form_heads
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
