Commit Graph

2520 Commits

Author SHA1 Message Date
Adriane Boyd
4f441dfa24
Fix infix as prefix in Tokenizer.explain (#10140)
* Fix infix as prefix in Tokenizer.explain

Update `Tokenizer.explain` to align with the `Tokenizer` algorithm:

* skip infix matches that are prefixes in the current substring

* Update tokenizer pseudocode in docs
2022-01-28 17:00:54 +01:00
github-actions[bot]
6d4db5c3c7
Auto-format code with black (#10106)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-01-21 10:01:10 +01:00
Sofie Van Landeghem
4465fe0306
Merge branch 'develop' into feature/master_copy 2022-01-20 13:36:17 +01:00
Duygu Altinok
47a2916801
Intify IOB (#9738)
* added iob to int

* added tests

* added iob strings

* added error

* blacked attrs

* Update spacy/tests/lang/test_attrs.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/attrs.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* added iob strings as global

* minor refinement with iob

* removed iob strings from token

* changed to uppercase

* cleaned and went back to master version

* imported iob from attrs

* Update and format errors

* Support and test both str and int ENT_IOB key

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:19:38 +01:00
Duygu Altinok
268ddf8a06
Add ENT_IOB key to Matcher (#9649)
* added new field

* added exception for IOb strings

* minor refinement to schema

* removed field

* fixed typo

* imported numeriacla val

* changed the code bit

* cosmetics

* added test for matcher

* set ents of moc docs

* added invalid pattern

* minor update to documentation

* blacked matcher

* added pattern validation

* add IOB vals to schema

* changed into test

* mypy compat

* cleaned left over

* added compat import

* changed type

* added compat import

* changed literal a bit

* went back to old

* made explicit type

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/schemas.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-20 13:18:39 +01:00
Adriane Boyd
a55212fca0
Determine labels by factory name in debug data (#10079)
* Determine labels by factory name in debug data

For all components, return labels for all components with the
corresponding factory name rather than for only the default name.

For `spancat`, return labels as a dict keyed by `spans_key`.

* Refactor for typing

* Add test

* Use assert instead of cast, removed unneeded arg

* Mark test as slow
2022-01-20 11:42:52 +01:00
Richard Hudson
e9c6314539
Bugfix for similarity return types (#10051) 2022-01-20 11:40:46 +01:00
Daniël de Kok
50d2a2c930
User fewer Vector internals (#9879)
* Use Vectors.shape rather than Vectors.data.shape

* Use Vectors.size rather than Vectors.data.size

* Add Vectors.to_ops to move data between different ops

* Add documentation for Vector.to_ops
2022-01-18 17:14:35 +01:00
Adriane Boyd
4dfd559e55
Fix spaces in Doc.from_docs for empty docs (#10052)
Fix spaces in `Doc.from_docs(ensure_whitespace=True)` for cases where an
doc ending in whitespace is followed by an empty doc.
2022-01-18 17:12:42 +01:00
Paul O'Leary McCann
c28e33637b
Mark flaky spancat test so it doesn't fail the build (#10075)
* Mark flaky spancat test so it doesn't fail the build

* Skip, don't run and ignore
2022-01-18 09:36:28 +01:00
Natalia Rodnova
47ea6704f1
Span richcmp fix (#9956)
* Corrected Span's __richcmp__ implementation to take end, label and kb_id in consideration

* Updated test

* Updated test

* Removed formatting from a test for readability sake

* Use same tuples for all comparisons

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-01-17 11:17:49 +01:00
Adriane Boyd
add52935ff
Revert "Bump sudachipy version (#9917)" (#10071)
This reverts commit 58bdd8607b.
2022-01-17 10:38:37 +01:00
Paul O'Leary McCann
58bdd8607b
Bump sudachipy version (#9917)
* Edited Slovenian stop words list (#9707)

* Noun chunks for Italian (#9662)

* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe

* French NP review (#9667)

* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix

* Add Japanese kana characters to default exceptions (fix #9693) (#9742)

This includes the main kana, or phonetic characters, used in Japanese.

There are some supplemental kana blocks in Unicode outside the BMP that
could also be included, but because their actual use is rare I omitted
them for now, but maybe they should be added. The omitted blocks are:

- Kana Supplement
- Kana Extended (A and B)
- Small Kana Extension

* Remove NER words from stop words in Norwegian (#9820)

Default stop words in Norwegian bokmål (nb) in Spacy contain important entities, e.g. France, Germany, Russia, Sweden and USA, police district, important units of time, e.g. months and days of the week, and organisations.

Nobody expects their presence among the default stop words. There is a danger of users complying with the general recommendation of filtering out stop words, while being unaware of filtering out important entities from their data.

See explanation in https://github.com/explosion/spaCy/issues/3052#issuecomment-986756711 and comment https://github.com/explosion/spaCy/issues/3052#issuecomment-986951831

* Bump sudachipy version

* Update sudachipy versions

* Bump versions

Bumping to the most recent dictionary just to keep thing current.
Bumping sudachipy to 5.2 because older versions don't support recent
dictionaries.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Duygu Altinok <duygu@explosion.ai>
Co-authored-by: Haakon Meland Eriksen <haakon.eriksen@far.no>
2022-01-17 08:16:22 +01:00
jsnfly
176a90edee
Fix texcat loss scaling (#9904) (#10002)
* add failing test for issue 9904

* remove division by batch size and summation before applying the mean

Co-authored-by: jonas <jsnfly@gmx.de>
2022-01-13 09:03:23 +01:00
Florian Cäsar
86e71e7b19
Fix Scorer.score_cats for missing labels (#9443)
* Fix Scorer.score_cats for missing labels

* Add test case for Scorer.score_cats missing labels

* semantic nitpick

* black formatting

* adjust test to give different results depending on multi_label setting

* fix loss function according to whether or not missing values are supported

* add note to docs

* small fixes

* make mypy happy

* Update spacy/pipeline/textcat.py

Co-authored-by: Florian Cäsar <florian.caesar@pm.me>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-12-29 11:04:39 +01:00
Duygu Altinok
7ec1452f5f
added ellided forms (#9878)
* added ellided forms

* rearranged a bit

* rearranged a bit

* added stopword tests

* blacked tests file
2021-12-23 13:41:01 +01:00
Sofie Van Landeghem
7847839003
Merge pull request #9891 from explosion/master
Update develop with master
2021-12-17 14:01:27 +01:00
Duygu Altinok
b56b9e7f31
Entity ruler remove pattern (#9685)
* added ruler coe

* added error for none existing pattern

* changed error to warning

* changed error to warning

* added basic tests

* fixed place

* added test files

* went back to error

* went back to pattern error

* minor change to docs

* changed style

* changed doc

* changed error slightly

* added remove to phrasem api

* error key already existed

* phrase matcher match code to api

* blacked tests

* moved comments before expr

* corrected error no

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 15:32:49 +01:00
Natalia Rodnova
472740d613
Added sents property to Span for Spans spanning over several sentences (#9699)
* Added sents property to Span class that returns a generator of sentences the Span belongs to

* Added description to Span.sents property

* Update test_span to clarify the difference between span.sent and span.sents

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/doc/test_span.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix documentation typos in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update Span.sents doc string in spacy/tokens/span.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Parametrized test_span_spans

* Corrected Span.sents to check for span-level hook first. Also, made Span.sent respect doc-level sents hook if no span-level hook is provided

* Corrected Span ocumentation copy/paste issue

* Put back accidentally deleted lines

* Fixed formatting in span.pyx

* Moved check for SENT_START annotation after user hooks in Span.sents

* add version where the property was introduced

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-12-06 09:58:01 +01:00
Lj Miranda
7d50804644
Migrate regression tests into the main test suite (#9655)
* Migrate regressions 1-1000

* Move serialize test to correct file

* Remove tests that won't work in v3

* Migrate regressions 1000-1500

Removed regression test 1250 because v3 doesn't support the old LEX
scheme anymore.

* Add missing imports in serializer tests

* Migrate tests 1500-2000

* Migrate regressions from 2000-2500

* Migrate regressions from 2501-3000

* Migrate regressions from 3000-3501

* Migrate regressions from 3501-4000

* Migrate regressions from 4001-4500

* Migrate regressions from 4501-5000

* Migrate regressions from 5001-5501

* Migrate regressions from 5501 to 7000

* Migrate regressions from 7001 to 8000

* Migrate remaining regression tests

* Fixing missing imports

* Update docs with new system [ci skip]

* Update CONTRIBUTING.md

- Fix formatting
- Update wording

* Remove lemmatizer tests in el lang

* Move a few tests into the general tokenizer

* Separate Doc and DocBin tests
2021-12-04 20:34:48 +01:00
Sofie Van Landeghem
58e29776bd
Merge pull request #9777 from explosion/master
Update develop with master
2021-11-30 14:01:23 +01:00
Duygu Altinok
29f28d1f3e
French NP review (#9667)
* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix
2021-11-30 12:19:07 +01:00
Narayan Acharya
1be8a4dab3
Displacy serve entity linking support without manual=True support. (#9748)
* Add support for kb_id to be displayed via displacy.serve. The current support is only limited to the manual option in displacy.render

* Commit to check pre-commit hooks are run.

* Update spacy/displacy/__init__.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Changes as per suggestions on the PR.

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update website/docs/api/top-level.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* tag option as new from 3.2.1 onwards

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-11-29 17:13:26 +01:00
Paul O'Leary McCann
ac05de2c6c
Fix Language-specific factory handling in package command (#9674)
* Use internal names for factories

If a component factory is registered like `@French.factory(...)` instead
of `@Language.factory(...)`, the name in the factories registry will be
prefixed with the language code. However in the nlp.config object the
factory will be listed without the language code. The `add_pipe` code
has fallback logic to handle this, but packaging code and the registry
itself don't.

This change makes it so that the factory name in nlp.config is the
language-specific form. It's not clear if this will break anything else,
but it does seem to fix the inconsistency and resolve the specific user
issue that brought this to our attention.

* Change approach to use fallback in package lookup

This adds fallback logic to the package lookup, so it doesn't have to
touch the way the config is built. It seems to fix the tests too.

* Remove unecessary line

* Add test

Thsi also adds an assert that seems to have been forgotten.
2021-11-29 08:31:02 +01:00
Richard Hudson
7b134b8fbd
New tests for a number of alpha languages (#9703)
* Added Slovak

* Added Slovenian tests

* Added Estonian tests

* Added Croatian tests

* Added Latvian tests

* Added Icelandic tests

* Added Afrikaans tests

* Added language-independent tests

* Added Kannada tests

* Tidied up

* Added Albanian tests

* Formatted with black

* Added failing tests for anomalies

* Update spacy/tests/lang/af/test_text.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Estonian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Croatian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Icelandic tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Latvian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovak tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Added context to failing Slovenian tokenizer test

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-28 21:59:23 +01:00
Natalia Rodnova
a4c43e5c57
Allow Matcher to match on ENT_ID and ENT_KB_ID (#9688)
* Added ENT_ID and ENT_KB_ID into the list of the attributes that Matcher matches on

* Added ENT_ID and ENT_KB_ID to TEST_PATTERNS in test_pattern_validation.py. Disabled tests that I added before

* Update website/docs/api/matcher.md

* Format

* Remove skipped tests

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-24 10:37:10 +01:00
Duygu Altinok
25bd9f9d48
Noun chunks for Italian (#9662)
* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe
2021-11-23 16:29:25 +01:00
Duygu Altinok
a7d7e80adb
EntityRuler improve disk load error message (#9658)
* added error string

* added serialization test

* added more to if statements

* wrote file to tempdir

* added tempdir

* changed parameter a bit

* Update spacy/tests/pipeline/test_entity_ruler.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-23 16:26:05 +01:00
Adriane Boyd
9ac6d4991e
Add doc_cleaner component (#9659)
* Add doc_cleaner component

* Fix types

* Fix loop

* Rephrase method description
2021-11-23 15:33:33 +01:00
Adriane Boyd
c9baf9d196
Fix spancat for empty docs and zero suggestions (#9654)
* Fix spancat for empty docs and zero suggestions

* Use ops.xp.zeros in test
2021-11-15 12:40:55 +01:00
Sofie Van Landeghem
c97f29c593
Merge pull request #9629 from ljvmiranda921/chore/migrate-regressions
Migrate regression and other tests to the new pytest marker
2021-11-08 09:07:38 +01:00
Lj Miranda
909177589d Remove utility script 2021-11-06 06:35:58 +08:00
Adriane Boyd
0fc3dee772
Merge pull request #9596 from adrianeboyd/tests/reenable-v3.2.0-tests
Reenable tests for v3.2.0
2021-11-05 10:54:30 +01:00
Adriane Boyd
e6f91b6f27
Format (#9630) 2021-11-05 09:56:26 +01:00
Lj Miranda
8e7deaf210 Add missing imports in some regression tests
- test_issue7001-8000.py
- test_issue8190.py
2021-11-05 11:47:59 +08:00
Lj Miranda
addeb34bc4 Decorate regression tests
Even if the issue number is already in the file, I still
decorated them just to follow the convention found in test_issue8168.py
2021-11-05 11:47:44 +08:00
Lj Miranda
91dec2c76e Decorate non-regression tests 2021-11-05 11:47:33 +08:00
Lj Miranda
199943deb4 Add simple script to add pytest marks 2021-11-05 11:47:28 +08:00
Duygu Altinok
f0e8c9fe58
Spanish noun chunks review (#9537)
* updated syntax iters

* formatted the code

* added prepositional objects

* code clean up

* eliminated left attached adp

* added es vocab

* added basic tests

* fixed typo

* fixed typo

* list to set

* fixed doc name

* added code for conj

* more tests

* differentiated adjectives and flat

* fixed typo

* added compounds

* more compounds

* tests for compounds

* tests for nominal modifiers

* fixed typo

* fixed typo

* formatted file

* reformatted tests

* fixed typo

* fixed punct typo

* formatted after changes

* added indirect object

* added full sentence examples

* added longer full sentence examples

* fixed sentence length of test

* added passive subj

* added test case by Damian
2021-11-05 00:46:36 +01:00
Duygu Altinok
6e6650307d
Portuguese noun chunks review (#9559)
* added tests

* added pt vocab

* transferred spanish

* added syntax iters

* fixed parenthesis

* added nmod example

* added relative pron

* fixed rel pron

* added rel subclause

* corrected typo

* added more NP chains

* long sentence

* fixed typo

* fixed typo

* fixed typo

* corrected heads

* added passive subj

* added pass subj

* added passive obj

* refinement to rights

* went back to odl

* fixed test

* fixed typo

* fixed typo

* formatted

* Format

* Format test cases

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-04 23:55:49 +01:00
Adriane Boyd
07dea324f6 Merge remote-tracking branch 'upstream/develop' into chore/switch-to-master-v3.2.0 2021-11-03 15:32:18 +01:00
Bram Vanroy
cab9209c3d
use metaclass to decorate errors (#9593) 2021-11-03 15:29:32 +01:00
Adriane Boyd
db0d8c56d0
Add test for Language.pipe as_tuples with custom error handlers (#9608)
* make nlp.pipe() return None docs when no exceptions are (re-)raised during error handling

* Remove changes other than as_tuples test

* Only check warning count for one process

* Fix types

* Format

Co-authored-by: Xi Bai <xi.bai.ed@gmail.com>
2021-11-03 10:57:34 +01:00
Adriane Boyd
6eee024ff6
Pickle Doc._context (#9603) 2021-11-03 09:14:29 +01:00
Adriane Boyd
4d5db737e9 Revert "Temporarily skip compat tests (#9594)"
This reverts commit 667572adca.
2021-11-02 14:24:06 +01:00
Adriane Boyd
667572adca
Temporarily skip compat tests (#9594) 2021-11-02 14:10:48 +01:00
Lj Miranda
f1bc655a38
Add initial Tagalog (tl) tests (#9582)
* Add tl_tokenizer to test fixtures

* Add tagalog tests
2021-11-02 08:35:49 +01:00
Adriane Boyd
2d430958e1 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-3 2021-10-29 12:18:15 +02:00
Adriane Boyd
5477453ea3
Docs for thinc-apple-ops (#9549)
* Docs for thinc-apple-ops

* Ignore thinc-apple-ops in reqs tests

* Fix install quickstart

* Add cupy cuda 113, 114 extras

* Remove draft section

Co-authored-by: Ines Montani <ines@ines.io>
2021-10-29 10:35:31 +02:00
Adriane Boyd
12974bf4d9
Add micro PRF for morph scoring (#9546)
* Add micro PRF for morph scoring

For pipelines where morph features are added by more than one component
and a reference training corpus may not contain all features, a micro
PRF score is more flexible than a simple accuracy score. An example is
the reading and inflection features added by the Japanese tokenizer.

* Use `morph_micro_f` as the default morph score for Japanese
morphologizers.

* Update docstring

* Fix typo in docstring

* Update Scorer API docs

* Fix results type

* Organize score list by attribute prefix
2021-10-29 10:29:29 +02:00
Adriane Boyd
c053f158c5
Add support for floret vectors (#8909)
* Add support for fasttext-bloom hash-only vectors

Overview:

* Extend `Vectors` to have two modes: `default` and `ngram`
  * `default` is the default mode and equivalent to the current
    `Vectors`
  * `ngram` supports the hash-only ngram tables from `fasttext-bloom`
* Extend `spacy.StaticVectors.v2` to handle both modes with no changes
  for `default` vectors
* Extend `spacy init vectors` to support ngram tables

The `ngram` mode **only** supports vector tables produced by this
fork of fastText, which adds an option to represent all vectors using
only the ngram buckets table and which uses the exact same ngram
generation algorithm and hash function (`MurmurHash3_x64_128`).
`fasttext-bloom` produces an additional `.hashvec` table, which can be
loaded by `spacy init vectors --fasttext-bloom-vectors`.

https://github.com/adrianeboyd/fastText/tree/feature/bloom

Implementation details:

* `Vectors` now includes the `StringStore` as `Vectors.strings` so that
  the API can stay consistent for both `default` (which can look up from
  `str` or `int`) and `ngram` (which requires `str` to calculate the
  ngrams).

* In ngram mode `Vectors` uses a default `Vectors` object as a cache
  since the ngram vectors lookups are relatively expensive.

  * The default cache size is the same size as the provided ngram vector
    table.

  * Once the cache is full, no more entries are added. The user is
    responsible for managing the cache in cases where the initial
    documents are not representative of the texts.

  * The cache can be resized by setting `Vectors.ngram_cache_size` or
    cleared with `vectors._ngram_cache.clear()`.

* The API ends up a bit split between methods for `default` and for
  `ngram`, so functions that only make sense for `default` or `ngram`
  include warnings with custom messages suggesting alternatives where
  possible.

* `Vocab.vectors` becomes a property so that the string stores can be
  synced when assigning vectors to a vocab.

* `Vectors` serializes its own config settings as `vectors.cfg`.

* The `Vectors` serialization methods have added support for `exclude`
  so that the `Vocab` can exclude the `Vectors` strings while serializing.

Removed:

* The `minn` and `maxn` options and related code from
  `Vocab.get_vector`, which does not work in a meaningful way for default
  vector tables.

* The unused `GlobalRegistry` in `Vectors`.

* Refactor to use reduce_mean

Refactor to use reduce_mean and remove the ngram vectors cache.

* Rename to floret

* Rename to floret in error messages

* Use --vectors-mode in CLI, vector init

* Fix vectors mode in init

* Remove unused var

* Minor API and docstrings adjustments

* Rename `--vectors-mode` to `--mode` in `init vectors` CLI
* Rename `Vectors.get_floret_vectors` to `Vectors.get_batch` and support
  both modes.
* Minor updates to Vectors docstrings.

* Update API docs for Vectors and init vectors CLI

* Update types for StaticVectors
2021-10-27 14:08:31 +02:00
Adriane Boyd
0c97ed2746
Rename ja morph features to Inflection and Reading (#9520)
* Rename ja morph features to Inflection and Reading
2021-10-27 13:13:03 +02:00
Adriane Boyd
2ea9b58006
Ignore prefix in suffix matches (#9155)
* Ignore prefix in suffix matches

Ignore the currently matched prefix when looking for suffix matches in
the tokenizer. Otherwise a lookbehind in the suffix pattern may match
incorrectly due the presence of the prefix in the token string.

* Move °[cfkCFK]. to a tokenizer exception

* Adjust exceptions for same tokenization as v3.1

* Also update test accordingly

* Continue to split . after °CFK if ° is not a prefix

* Exclude new ° exceptions for pl

* Switch back to default tokenization of "° C ."

* Revert "Exclude new ° exceptions for pl"

This reverts commit 952013a5b4.

* Add exceptions for °C for hu
2021-10-27 13:02:25 +02:00
Adriane Boyd
386dcada1c
Address random results in slow readers tests (#9544)
* Set random seed for dataset shuffling
* Use more dev examples for non-zero scores
2021-10-26 16:53:10 +02:00
Adriane Boyd
a803af9dfa Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-1 2021-10-26 11:53:50 +02:00
github-actions[bot]
b0b115ff39
Auto-format code with black (#9530)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-10-22 13:03:10 +02:00
Daniël de Kok
f31ac6fd4f
Print a warning when multiprocessing is used on a GPU (#9475)
* Raise an error when multiprocessing is used on a GPU

As reported in #5507, a confusing exception is thrown when
multiprocessing is used with a GPU model and the `fork` multiprocessing
start method:

cupy.cuda.runtime.CUDARuntimeError: cudaErrorInitializationError: initialization error

This change checks whether one of the models uses the GPU when
multiprocessing is used. If so, raise a friendly error message.

Even though multiprocessing can work on a GPU with the `spawn` method,
it quickly runs the GPU out-of-memory on real-world data. Also,
multiprocessing on a single GPU typically does not provide large
performance gains.

* Move GPU multiprocessing check to Language.pipe

* Warn rather than error when using multiprocessing with GPU models

* Improve GPU multiprocessing warning message.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Reduce API assumptions

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/language.py

* Update spacy/language.py

* Test that warning is thrown with GPU + multiprocessing

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-10-21 16:14:23 +02:00
Sofie Van Landeghem
5a38f79f18
Custom component types in spacy.ty (#9469)
* add custom protocols in spacy.ty

* add a test for the new types in spacy.ty

* import Example when type checking

* some type fixes

* put Protocol in compat

* revert update check back to hasattr

* runtime_checkable in compat as well
2021-10-21 15:31:06 +02:00
Ines Montani
ad9f57cbbf Allow conftest.py to run twice for build envs 2021-10-19 15:13:25 +02:00
Sofie Van Landeghem
da578c3d3b
Fix kb.set_entities (#9463)
* avoid creating _vectors_table when also using c_add_vector

* write to self._vectors_table directly in set_entities
2021-10-19 09:39:17 +02:00
Adriane Boyd
271e8e7856
Skip compat table tests for prerelease versions (#9476) 2021-10-15 14:28:02 +02:00
github-actions[bot]
29e83f0819
Auto-format code with black (#9474)
* Auto-format code with black

* Update spacy/pipeline/pipe.pyi

Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-10-15 11:36:49 +02:00
Connor Brinton
657af5f91f
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167)
* 🚨 Ignore all existing Mypy errors

* 🏗 Add Mypy check to CI

* Add types-mock and types-requests as dev requirements

* Add additional type ignore directives

* Add types packages to dev-only list in reqs test

* Add types-dataclasses for python 3.6

* Add ignore to pretrain

* 🏷 Improve type annotation on `run_command` helper

The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.

* 🔧 Allow variable type redefinition in limited contexts

These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:

```python
def process(items: List[str]) -> None:
    # 'items' has type List[str]
    items = [item.split() for item in items]
    # 'items' now has type List[List[str]]
    ...
```

This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`

These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.

* 🏷 Add type annotation to converters mapping

* 🚨 Fix Mypy error in convert CLI argument verification

* 🏷 Improve type annotation on `resolve_dot_names` helper

* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`

* 🏷 Add type annotations for more `Vocab` attributes

* 🏷 Add loose type annotation for gold data compilation

* 🏷 Improve `_format_labels` type annotation

* 🏷 Fix `get_lang_class` type annotation

* 🏷 Loosen return type of `Language.evaluate`

* 🏷 Don't accept `Scorer` in `handle_scores_per_type`

* 🏷 Add `string_to_list` overloads

* 🏷 Fix non-Optional command-line options

* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`

*  Install `typing_extensions` in Python 3.8+

The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.

Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.

These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.

* 🏷 Improve type annotation for `Language.pipe`

These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.

Fixes #8772

*  Don't install `typing-extensions` in Python 3.8+

After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉

These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.

* resolve mypy errors for Strict pydantic types

* refactor code to avoid missing return statement

* fix types of convert CLI command

* avoid list-set confustion in debug_data

* fix typo and formatting

* small fixes to avoid type ignores

* fix types in profile CLI command and make it more efficient

* type fixes in projects CLI

* put one ignore back

* type fixes for render

* fix render types - the sequel

* fix BaseDefault in language definitions

* fix type of noun_chunks iterator - yields tuple instead of span

* fix types in language-specific modules

* 🏷 Expand accepted inputs of `get_string_id`

`get_string_id` accepts either a string (in which case it returns its 
ID) or an ID (in which case it immediately returns the ID). These 
changes extend the type annotation of `get_string_id` to indicate that 
it can accept either strings or IDs.

* 🏷 Handle override types in `combine_score_weights`

The `combine_score_weights` function allows users to pass an `overrides` 
mapping to override data extracted from the `weights` argument. Since it 
allows `Optional` dictionary values, the return value may also include 
`Optional` dictionary values.

These changes update the type annotations for `combine_score_weights` to 
reflect this fact.

* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`

* 🏷 Fix redefinition of `wandb_logger`

These changes fix the redefinition of `wandb_logger` by giving a 
separate name to each `WandbLogger` version. For 
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` 
as `wandb_logger` for now.

* more fixes for typing in language

* type fixes in model definitions

* 🏷 Annotate `_RandomWords.probs` as `NDArray`

* 🏷 Annotate `tok2vec` layers to help Mypy

* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6

Also remove an import that I forgot to move to the top of the module 😅

* more fixes for matchers and other pipeline components

* quick fix for entity linker

* fixing types for spancat, textcat, etc

* bugfix for tok2vec

* type annotations for scorer

* add runtime_checkable for Protocol

* type and import fixes in tests

* mypy fixes for training utilities

* few fixes in util

* fix import

* 🐵 Remove unused `# type: ignore` directives

* 🏷 Annotate `Language._components`

* 🏷 Annotate `spacy.pipeline.Pipe`

* add doc as property to span.pyi

* small fixes and cleanup

* explicit type annotations instead of via comment

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 15:21:40 +02:00
Adriane Boyd
d98d525bc8 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.1-3 2021-10-14 09:41:46 +02:00
Paul O'Leary McCann
a3b7519aba
Fix JA Morph Values (#9449)
* Don't set empty / weird values in morph

* Update tests to handy empty morph values

* Fix everything

* Replace potentially problematic characters

* Fix test
2021-10-14 09:21:36 +02:00
Ines Montani
c48564688f
Merge pull request #9423 from explosion/tests/issue-marker 2021-10-13 16:53:40 +02:00
Jette16
78365452d3
Moved test for universe into .github folder (#9447)
* Moved universe-test into .github folder

* Cleaned code

* CHanged a file name
2021-10-13 14:13:06 +02:00
Sofie Van Landeghem
2e3d6b8b5a
Fix test for spancat (#9446)
* fix test for spancat

* increase tolerance for almost equal checks

* Update spacy/tests/test_models.py

* Update spacy/tests/test_models.py
2021-10-13 10:47:56 +02:00
Paul O'Leary McCann
efe5beefe0
Add test for case where parser overwrite annotations (#9406)
* Add test for case where parser overwrite annotations

* Move test to its own file

Also add note about how other tokens modify results.

* Fix xfail decorator
2021-10-11 14:57:45 +02:00
Ines Montani
1fa7c4e73b Support issue marker via pytest 2021-10-11 13:56:24 +02:00
Jette16
3b144a3a51 Add universe test (#9278)
* Added test for universe.json

* Added contributor agreement

* Ran black on test_universe_json.py
2021-10-11 11:08:46 +02:00
Paul O'Leary McCann
2a7e327310
Fix Dependency Matcher Ordering Issue (#9337)
* Fix inconsistency

This makes the failing test pass, so that behavior is consistent whether
patterns are added in one call or two.

The issue is that the hash for patterns depended on the index of the
pattern in the list of current patterns, not the list of total patterns,
so a second call would get identical match ids.

* Add illustrative test case

* Add failing test for remove case

Patterns are not removed from the internal matcher on calls to remove,
which causes spurious weird matches (or misses).

* Fix removal issue

Remove patterns from the internal matcher.

* Check that the single add call also gets no matches
2021-10-11 10:26:13 +02:00
Paul O'Leary McCann
113d53ab6c
Fix tests for changes to inflection structure (#9390) 2021-10-07 13:42:18 +02:00
Elia Robyn Lake (Robyn Speer)
53b5f245ed
Allow IETF language codes, aliases, and close matches (#9342)
* use language-matching to allow language code aliases

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* link to "IETF language tags" in docs

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* Make requirements consistent

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* change "two-letter language ID" to "IETF language tag" in language docs

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* use langcodes 3.2 and handle language-tag errors better

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* all unknown language codes are ImportErrors

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
2021-10-05 09:52:22 +02:00
Paul O'Leary McCann
1ee6541ab0
Moving Japanese tokenizer extra info to Token.morph (#8977)
* Use morph for extra Japanese tokenizer info

Previously Japanese tokenizer info that didn't correspond to Token
fields was put in user data. Since spaCy core should avoid touching user
data, this moves most information to the Token.morph attribute. It also
adds the normalized form, which wasn't exposed before.

The subtokens, which are a list of full tokens, are still added to user
data, except with the default tokenizer granualarity. With the default
tokenizer settings the subtokens are all None, so in this case the user
data is simply not set.

* Update tests

Also adds a new test for norm data.

* Update docs

* Add Japanese morphologizer factory

Set the default to `extend=True` so that the morphologizer does not
clobber the values set by the tokenizer.

* Use the norm_ field for normalized forms

Before this commit, normalized forms were put in the "norm" field in the
morph attributes. I am not sure why I did that instead of using the
token morph, I think I just forgot about it.

* Skip test if sudachipy is not installed

* Fix import

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-10-01 19:19:26 +02:00
Paul O'Leary McCann
8f2409e514
Don't serialize user data in DocBin if not saving it (fix #9190) (#9226)
* Don't store user data if told not to (fix #9190)

* Add unit tests for the store_user_data setting
2021-10-01 12:37:39 +02:00
Adriane Boyd
b3192ddea3
Sync thinc install dep in setup, fix test packaging (#9336)
* Sync thinc install dep in setup

* Add __init__.py to include package tests in package

* Include *.toml in package
2021-09-30 19:02:10 +02:00
Adriane Boyd
03fefa37e2
Add overwrite settings for more components (#9050)
* Add overwrite settings for more components

For pipeline components where it's relevant and not already implemented,
add an explicit `overwrite` setting that controls whether
`set_annotations` overwrites existing annotation.

For the `morphologizer`, add an additional setting `extend`, which
controls whether the existing features are preserved.

* +overwrite, +extend: overwrite values of existing features, add any new
features
* +overwrite, -extend: overwrite completely, removing any existing
features
* -overwrite, +extend: keep values of existing features, add any new
features
* -overwrite, -extend: do not modify the existing value if set

In all cases an unset value will be set by `set_annotations`.

Preserve current overwrite defaults:

* True: morphologizer, entity linker
* False: tagger, sentencizer, senter

* Add backwards compat overwrite settings

* Put empty line back

Removed by accident in last commit

* Set backwards-compatible defaults in __init__

Because the `TrainablePipe` serialization methods update `cfg`, there's
no straightforward way to detect whether models serialized with a
previous version are missing the overwrite settings.

It would be possible in the sentencizer due to its separate
serialization methods, however to keep the changes parallel, this also
sets the default in `__init__`.

* Remove traces

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
2021-09-30 15:35:55 +02:00
Adriane Boyd
effae12cbd
Update slow readers test to use textcat_multilabel (#9300) 2021-09-27 20:04:02 +02:00
Adriane Boyd
fe5f5d6ac6
Update Catalan tokenizer (#9297)
* Update Makefile

For more recent python version

* updated for bsc changes

New tokenization changes

* Update test_text.py

* updating tests and requirements

* changed failed test in test/lang/ca

changed failed test in test/lang/ca

* Update .gitignore

deleted stashed changes line

* back to python 3.6 and remove transformer requirements

As per request

* Update test_exception.py

Change the test

* Update test_exception.py

Remove test print

* Update Makefile

For more recent python version

* updated for bsc changes

New tokenization changes

* updating tests and requirements

* Update requirements.txt

Removed spacy-transfromers from requirements

* Update test_exception.py

Added final punctuation to ensure consistency

* Update Makefile

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Format

* Update test to check all tokens

Co-authored-by: cayorodriguez <crodriguezp@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-27 14:42:30 +02:00
Adriane Boyd
03f234b739 Merge remote-tracking branch 'upstream/master' into develop 2021-09-27 09:10:45 +02:00
github-actions[bot]
4da2af4e0e
Auto-format code with black (#9284)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-09-24 10:46:43 +02:00
Jette16
5eced281d8
Add universe test (#9278)
* Added test for universe.json

* Added contributor agreement

* Ran black on test_universe_json.py
2021-09-23 14:31:42 +02:00
Adriane Boyd
2f0bb77920
Accept Doc input in pipelines (#9069)
* Accept Doc input in pipelines

Allow `Doc` input to `Language.__call__` and `Language.pipe`, which
skips `Language.make_doc` and passes the doc directly to the pipeline.

* ensure_doc helper function

* avoid running multiple processes on GPU

* Update spacy/tests/test_language.py

Co-authored-by: svlandeg <svlandeg@github.com>
2021-09-22 09:41:05 +02:00
Adriane Boyd
00bdb31150
Fix vector for 0-length span (#9244) 2021-09-20 20:22:49 +02:00
github-actions[bot]
015d439eb6
Auto-format code with black (#9234)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-09-20 08:49:19 +02:00
Paul O'Leary McCann
c4f0800fb8
Validate pos values when creating Doc (#9148)
* Validate pos values when creating Doc

* Add clear error when setting invalid pos

This also changes the error language slightly.

* Fix variable name

* Update spacy/tokens/doc.pyx

* Test that setting invalid pos raises an error

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-16 13:28:05 +02:00
Paul O'Leary McCann
0f01f46e02
Update Cython string types (#9143)
* Replace all basestring references with unicode

`basestring` was a compatability type introduced by Cython to make
dealing with utf-8 strings in Python2 easier. In Python3 it is
equivalent to the unicode (or str) type.

I replaced all references to basestring with unicode, since that was
used elsewhere, but we could also just replace them with str, which
shoudl also be equivalent.

All tests pass locally.

* Replace all references to unicode type with str

Since we only support python3 this is simpler.

* Remove all references to unicode type

This removes all references to the unicode type across the codebase and
replaces them with `str`, which makes it more drastic than the prior
commits. In order to make this work importing `unicode_literals` had to
be removed, and one explicit unicode literal also had to be removed (it
is unclear why this is necessary in Cython with language level 3, but
without doing it there were errors about implicit conversion).

When `unicode` is used as a type in comments it was also edited to be
`str`.

Additionally `coding: utf8` headers were removed from a few files.
2021-09-13 17:02:17 +02:00
Adriane Boyd
aba6ce3a43
Handle spacy-legacy in package CLI for dependencies (#9163)
* Handle spacy-legacy in package CLI for dependencies

* Implement legacy backoff in spacy registry.find

* Remove unused import

* Update and format test
2021-09-08 11:46:40 +02:00
github-actions[bot]
584fae5807
Auto-format code with black (#9130)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-09-03 10:47:03 +02:00
Kevin Humphreys
ca93504660
Pass alignments to Matcher callbacks (#9001)
* pass alignments to callbacks

* refactor for single callback loop

* Update spacy/matcher/matcher.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-02 12:58:05 +02:00
Robyn Speer
d60b748e3c
Fix surprises when asking for the root of a git repo (#9074)
* Fix surprises when asking for the root of a git repo

In the case of the first asset I wanted to get from git, the data I
wanted was the entire repository. I tried leaving "path" blank, which
gave a less-than-helpful error, and then I tried `path: "/"`, which
started copying my entire filesystem into the project. The path I should
have used was "".

I've made two changes to make this smoother for others:

- The 'path' within a git clone defaults to ""
- If the path points outside of the tmpdir that the git clone goes
into, we fail with an error

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* use a descriptive error instead of a default

plus some minor fixes from PR review

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* check for None values in assets

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
2021-09-01 22:52:08 +02:00
github-actions[bot]
fb9c31fbda
Auto-format code with black (#9065)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-08-27 11:42:27 +02:00
Ines Montani
4cd052e81d
Include component factories in third-party dependencies resolver (#9009)
* Include component factories in third-party dependencies resolver

* Increment catalogue and update test
2021-08-25 14:58:01 +02:00
Sofie Van Landeghem
4d52d7051c
Fix spancat training on nested entities (#9007)
* overfitting test on non-overlapping entities

* add failing overfitting test for overlapping entities

* failing test for list comprehension

* remove test that was put in separate PR

* bugfix

* cleanup
2021-08-20 12:37:50 +02:00
Sofie Van Landeghem
de025beb5f
Warn and document spangroup.doc weakref (#8980)
* test for error after Doc has been garbage collected

* warn about using a SpanGroup when the Doc has been garbage collected

* add warning to the docs

* rephrase slightly

* raise error instead of warning

* update

* move warning to doc property
2021-08-20 11:06:19 +02:00
Adriane Boyd
c5de9b463a
Update custom tokenizer APIs and pickling (#8972)
* Fix incorrect pickling of Japanese and Korean pipelines, which led to
the entire pipeline being reset if pickled

* Enable pickling of Vietnamese tokenizer

* Update tokenizer APIs for Chinese, Japanese, Korean, Thai, and
Vietnamese so that only the `Vocab` is required for initialization
2021-08-19 14:37:47 +02:00
Ines Montani
d94ddd5686
Auto-detect package dependencies in spacy package (#8948)
* Auto-detect package dependencies in spacy package

* Add simple get_third_party_dependencies test

* Import packages_distributions explicitly

* Inline packages_distributions

* Fix docstring [ci skip]

* Relax catalogue requirement

* Move importlib_metadata to spacy.compat with note

* Include license information [ci skip]
2021-08-17 14:05:13 +02:00
Sofie Van Landeghem
0a6b68848f
Fix making span_group (#8975)
* fix _make_span_group

* fix imports
2021-08-17 10:36:34 +02:00
github-actions[bot]
92071326d8
Auto-format code with black (#8950)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-08-13 11:48:38 +02:00
Adriane Boyd
f99d6d5e39
Refactor scoring methods to use registered functions (#8766)
* Add scorer option to components

Add an optional `scorer` parameter to all pipeline components. If a
scoring function is provided, it overrides the default scoring method
for that component.

* Add registered scorers for all components

* Add `scorers` registry
* Move all scoring methods outside of components as independent
  functions and register
* Use the registered scoring methods as defaults in configs and inits

Additional:

* The scoring methods no longer have access to the full component, so
  use settings from `cfg` as default scorer options to handle settings
  such as `labels`, `threshold`, and `positive_label`
* The `attribute_ruler` scoring method no longer has access to the
  patterns, so all scoring methods are called
* Bug fix: `spancat` scoring method is updated to set `allow_overlap` to
  score overlapping spans correctly

* Update Russian lemmatizer to use direct score method

* Check type of cfg in Pipe.score

* Fix check

* Update spacy/pipeline/sentencizer.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Remove validate_examples from scoring functions

* Use Pipe.labels instead of Pipe.cfg["labels"]

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-08-10 15:13:39 +02:00
fgaim
ee011ca963
Update Tigrinya ትግርኛ language support (#8900)
* Add missing punctuation for Tigrinya and Amharic

* Fix numeral and ordinal numbers for Tigrinya

 - Amharic was used in many cases
 - Also fixed some typos

* Update Tigrinya stop-words

* Contributor agreement for fgaim

* Fix typo in "ti" lang test

* Remove multi-word entries from numbers and ordinals
2021-08-10 13:55:08 +02:00
Paul O'Leary McCann
6029cfc391
Add scores to output in spancat (#8855)
* Add scores to output in spancat

This exposes the scores as an attribute on the SpanGroup. Includes a
basic test.

* Add basic doc note

* Vectorize score calcs

* Add "annotation format" section

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Clean up doc section

* Ran prettier on docs

* Get arrays off the gpu before iterating over them

* Remove int() calls

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-08-10 13:47:49 +02:00
Adriane Boyd
a79888ed67 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.1-1 2021-08-09 13:13:13 +02:00
github-actions[bot]
56d4d87aeb
Auto-format code with black (#8895)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-08-06 13:38:06 +02:00
Adriane Boyd
fa2e7a4bbf
Fix spancat tests on GPU (#8872)
* Fix spancat tests on GPU

* Fix more spancat tests
2021-08-04 14:29:43 +02:00
Adriane Boyd
941a591f3c
Pass excludes when serializing vocab (#8824)
* Pass excludes when serializing vocab

Additional minor bug fix:

* Deserialize vocab in `EntityLinker.from_disk`

* Add test for excluding strings on load

* Fix formatting
2021-08-03 14:42:44 +02:00
Adriane Boyd
175847f92c
Support list values and INTERSECTS in Matcher (#8784)
* Support list values and IS_INTERSECT in Matcher

* Support list values as token attributes for set operators, not just as
pattern values.

* Add `IS_INTERSECT` operator.

* Fix incorrect `ISSUBSET` and `ISSUPERSET` in schema and docs.

* Rename IS_INTERSECT to INTERSECTS
2021-08-02 19:39:26 +02:00
Adriane Boyd
fbbbda1954
Fix start/end chars for empty and out-of-bounds spans (#8816) 2021-08-02 19:07:19 +02:00
Adriane Boyd
81d3a1edb1
Use tokenizer URL_MATCH pattern in LIKE_URL (#8765) 2021-07-27 12:07:01 +02:00
Sofie Van Landeghem
83e27d262e
negative tag annotation (#8731)
* unit test to unlearn tag via negative annotation

* bump thinc to 8.0.8
2021-07-19 14:39:11 +02:00
Ines Montani
f90482d077 Tidy up and auto-format 2021-07-18 15:44:56 +10:00
Ines Montani
15e6578f7d
Adjust formatting 2021-07-17 10:49:13 +10:00
explosion-bot
eff3d1088b Auto-format code with black 2021-07-16 08:03:36 +00:00
Adriane Boyd
ac45c7c045
Add pre-commit to ignored requirements (#8728) 2021-07-15 16:41:15 +02:00
jmyerston
993b0fab0e
Added ancient Greek language support (#8606)
* Add ancient Greek language support

Initial commit

* Contributor Agreement

* grc tokenizer test added  and files formatted with black, unnecessary import removed

Co-Authored-By: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Commas in lists fixed. __init__py added to test

* Update lex_attrs.py

* Update stop_words.py

* Update stop_words.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-07-15 10:27:17 +02:00
Sofie Van Landeghem
77859beb99
spacy.ngram_range_suggester.v1 (#8699) 2021-07-15 10:01:22 +02:00
Julien Rossi
e117573822
Adding noun_chunks to the DUTCH language model (nl) (#8529)
*  implement noun_chunks for dutch language

* copy/paste FR and SV syntax iterators to accomodate UD tags
* added tests with dutch text
* signed contributor agreement

* 🐛 fix noun chunks generator

* built from scratch
* define noun chunk as a single Noun-Phrase
* includes some corner cases debugging (incorrect POS tagging)
* test with provided annotated sample (POS, DEP)

*  fix failing test

* CI pipeline did not like the added sample file
* add the sample as a pytest fixture

* Update spacy/lang/nl/syntax_iterators.py

* Update spacy/lang/nl/syntax_iterators.py

Code readability

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/tests/lang/nl/test_noun_chunks.py

correct comment

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* finalize code

* change "if next_word" into "if next_word is not None"

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-07-14 14:01:02 +02:00
Adriane Boyd
b8e720fdb9
Fix Azerbaijani init, extend lang init tests (#8656)
* Extend langs in initialize tests

* Fix az init
2021-07-09 15:36:35 +02:00
Sofie Van Landeghem
64fac754fe
add spacy prefix to ngram_suggester.v1 (#8623) 2021-07-07 08:09:30 +02:00
Sofie Van Landeghem
733e8ceea9
fix spancat initialize with labels (#8620) 2021-07-06 19:08:25 +02:00
Sofie Van Landeghem
3daf57d70c
Small spancat fixes (#8614)
* two small fixes + additional tests

* rename
2021-07-06 14:15:41 +02:00
Adriane Boyd
29906884c5
Raise an error for textcat with <2 labels (#8584)
* Raise an error for textcat with <2 labels

Raise an error if initializing a `textcat` component without at least
two labels.

* Add similar note to docs

* Update positive_label description in API docs
2021-07-06 12:35:22 +02:00
explosion-bot
ee37288a1f Auto-format code with black 2021-07-02 07:48:26 +00:00
Ines Montani
af9d984407
Merge pull request #8405 from svlandeg/fix/whitespace_tokenizer [ci skip] 2021-06-30 20:52:59 +10:00
Ines Montani
7f65902702
Merge pull request #8522 from adrianeboyd/chore/update-flake8
Update flake8 version in reqs and CI
2021-06-28 21:46:06 +10:00
Adriane Boyd
86d01e9229 Tidy up with flake8: imports, comparisons, etc. 2021-06-28 12:08:15 +02:00
Adriane Boyd
5eeb25f043 Tidy up code 2021-06-28 12:08:15 +02:00
Adriane Boyd
4b0ed73ed4 Update flake8 version in reqs and CI
* Update some unneeded forward refs related to flake8 checks
2021-06-28 11:29:36 +02:00
Matthew Honnibal
f9946154d9
Add SpanCategorizer component (#6747)
* Draft spancat model

* Add spancat model

* Add test for extract_spans

* Add extract_spans layer

* Upd extract_spans

* Add spancat model

* Add test for spancat model

* Upd spancat model

* Update spancat component

* Upd spancat

* Update spancat model

* Add quick spancat test

* Import SpanCategorizer

* Fix SpanCategorizer component

* Import SpanGroup

* Fix span extraction

* Fix import

* Fix import

* Upd model

* Update spancat models

* Add scoring, update defaults

* Update and add docs

* Fix type

* Update spacy/ml/extract_spans.py

* Auto-format and fix import

* Fix comment

* Fix type

* Fix type

* Update website/docs/api/spancategorizer.md

* Fix comment

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Better defense

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix labels list

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/extract_spans.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/pipeline/spancat.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Set annotations during update

* Set annotations in spancat

* fix imports in test

* Update spacy/pipeline/spancat.py

* replace MaxoutLogistic with LinearLogistic

* fix config

* various small fixes

* remove set_annotations parameter in update

* use our beloved tupley format with recent support for doc.spans

* bugfix to allow renaming the default span_key (scores weren't showing up)

* use different key in docs example

* change defaults to better-working parameters from project (WIP)

* register spacy.extract_spans.v1 for legacy purposes

* Upd dev version so can build wheel

* layers instead of architectures for smaller building blocks

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Include additional scores from overrides in combined score weights

* Parameterize spans key in scoring

Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.

* Use the (intentionally very short) default spans key `sc` in the
  `SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
  returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
  the key in the `getter` instead.

Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.

* Update website/docs/api/scorer.md

* Fix scorer for spans key containing underscore

* Increment version

* Add Spans to Evaluate CLI (#8439)

* Add Spans to Evaluate CLI

* Change to spans_key

* Add spans per_type output

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Fix spancat GPU issues (#8455)

* Fix GPU issues

* Require thinc >=8.0.6

* Switch to glorot_uniform_init

* Fix and test ngram suggester

* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests

Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 12:35:27 +02:00
Adriane Boyd
393c3c70d7
Various fixes for spans in Docs.from_docs (#8487)
* Fix spans offsets if a doc ends in a single space and no space is
  inserted
* Also include spans key in merged doc for empty spans lists
2021-06-23 15:51:35 +02:00
Adriane Boyd
caba63b74f
Set version to v3.1.0 (#8452)
* Update test for v3.1

* Set version to v3.1.0
2021-06-21 10:41:40 +02:00
Adriane Boyd
9fde258053
Use minor version for compatibility check (#8403)
* Use minor version for compatibility check

* Use minor version of compatibility table
* Soften warning message about incompatible models
* Add test for presence of current version in compatibility table

* Add test for download compatibility table

* Use minor version of lower pin in error message if possible

* Fall back to spacy_git_version if available

* Fix unknown version string
2021-06-21 09:39:22 +02:00
Adriane Boyd
ec71a6b572
Filter W036 for entity ruler, etc. (#8424) 2021-06-21 09:34:29 +02:00
Adriane Boyd
7abfa25035
Don't use the same vocab for source models (#8388)
* Don't use the same vocab for source models

The source models should not be loaded with the vocab from the current
pipeline because this loads the vectors from the source model into the
current vocab.

The strings are all copied in `Language.create_pipe_from_source`, so if
the vectors are configured correctly in the current pipeline, the
sourced component will work as expected. If there is a vector mismatch,
a warning is shown. (It's not possible to inspect whether the vectors
are actually used by the component, so a warning is the best option.)

* Update comment on source model loading
2021-06-21 09:33:33 +02:00
Adriane Boyd
30d4eb506a
Fix setting empty entities in Example.from_dict (#8426) 2021-06-18 10:41:50 +02:00
Matthew Honnibal
6f5e308d17
Support negative examples in partial NER annotations (#8106)
* Support a cfg field in transition system

* Make NER 'has gold' check use right alignment for span

* Pass 'negative_samples_key' property into NER transition system

* Add field for negative samples to NER transition system

* Check neg_key in NER has_gold

* Support negative examples in NER oracle

* Test for negative examples in NER

* Fix name of config variable in NER

* Remove vestiges of old-style partial annotation

* Remove obsolete tests

* Add comment noting lack of support for negative samples in parser

* Additions to "neg examples" PR (#8201)

* add custom error and test for deprecated format

* add test for unlearning an entity

* add break also for Begin's cost

* add negative_samples_key property on Parser

* rename

* extend docs & fix some older docs issues

* add subclass constructors, clean up tests, fix docs

* add flaky test with ValueError if gold parse was not found

* remove ValueError if n_gold == 0

* fix docstring

* Hack in environment variables to try out training

* Remove hack

* Remove NER hack, and support 'negative O' samples

* Fix O oracle

* Fix transition parser

* Remove 'not O' from oracle

* Fix NER oracle

* check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation

* use set instead of list in consistency check

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-06-17 17:33:00 +10:00
svlandeg
bb9d2f1546 extend example to ensure the text is preserved 2021-06-16 23:56:35 +02:00
Sofie Van Landeghem
e796aab4b3
Resizable textcat (#7862)
* implement textcat resizing for TextCatCNN

* resizing textcat in-place

* simplify code

* ensure predictions for old textcat labels remain the same after resizing (WIP)

* fix for softmax

* store softmax as attr

* fix ensemble weight copy and cleanup

* restructure slightly

* adjust documentation, update tests and quickstart templates to use latest versions

* extend unit test slightly

* revert unnecessary edits

* fix typo

* ensemble architecture won't be resizable for now

* use resizable layer (WIP)

* revert using resizable layer

* resizable container while avoid shape inference trouble

* cleanup

* ensure model continues training after resizing

* use fill_b parameter

* use fill_defaults

* resize_layer callback

* format

* bump thinc to 8.0.4

* bump spacy-legacy to 3.0.6
2021-06-16 11:45:00 +02:00
svlandeg
29d83dec0c adjust whitespace tokenizer to avoid sep in split() 2021-06-16 10:58:45 +02:00
Antti Ajanki
5a6125c227
[Finnish tokenizer] Handle conjunction contractions (#8105) 2021-06-16 10:56:47 +02:00
Adriane Boyd
5646fcbe46 Merge remote-tracking branch 'upstream/develop' into chore/develop-into-master-v3.1 2021-06-15 15:05:17 +02:00
Paul O'Leary McCann
94e1346f44
Change span lemmas to use original whitespace (fix #8368) (#8391)
* Change span lemmas to use original whitespace (fix #8368)

This is a redo of #8371 based off master.

The test for this required some changes to existing tests. I don't think
the changes were significant but I'd like someone to check them.

* Remove mystery docstring

This sentence was uncompleted for years, and now we will never know how
it ends.
2021-06-15 13:24:54 +02:00
Paul O'Leary McCann
2c105cdbce
Raise error if deps not provided with heads (#8335)
* Fill in deps if not provided with heads

Before this change, if heads were passed without deps they would be
silently ignored, which could be confusing. See #8334.

* Use "dep" instead of a blank string

This is the customary placeholder dep. It might be better to show an
error here instead though.

* Throw error on heads without deps

* Add a test

* Fix tests

* Formatting

* Fix all tests

* Fix a test I missed

* Revise error message

* Clean up whitespace

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-06-15 13:23:32 +02:00
Adriane Boyd
b98d216205
Update Catalan language data (#8308)
* Update Catalan language data

Update Catalan language data based on contributions from the Text Mining
Unit at the Barcelona Supercomputing Center:

https://github.com/TeMU-BSC/spacy4release/tree/main/lang_data

* Update tokenizer settings for UD Catalan AnCora

Update for UD Catalan AnCora v2.7 with merged multi-word tokens.

* Update test

* Move prefix patternt to more generic infix pattern

* Clean up
2021-06-11 10:21:22 +02:00
Adriane Boyd
f4008bdb13
Restrict pymorphy2 requirement to pymorphy2 mode (#8299)
For the Russian and Ukrainian lemmatizers, restrict the `pymorphy2`
requirement to the mode `pymorphy2` so that lookup or other lemmatizer
modes can be loaded without installing `pymorphy2`.
2021-06-11 10:19:22 +02:00
Adriane Boyd
9dfd3c9484 Use warnings.warn instead of logger.warning 2021-06-04 17:44:08 +02:00
Sofie Van Landeghem
f0277bdeab Show warning if entity_ruler runs without patterns (#7807)
* Show warning if entity_ruler runs without patterns

* Show warning if matcher runs without patterns

* fix wording

* unit test for warning once (WIP)

* warn W036 only once

* cleanup

* create filter_warning helper
2021-06-04 17:37:38 +02:00
Paul O'Leary McCann
d959603d51
Don't add duplicate patterns all the time in EntityRuler (fix #8216) (#8246)
* Don't add duplicate patterns (fix #8216)

* Refactor EntityRuler init

This simplifies the EntityRuler init code. This is helpful as prep for
allowing the EntityRuler to reset itself.

* Make EntityRuler.clear reset matchers

Includes a new test for this.

* Tidy PhraseMatcher instantiation

Since the attr can be None safely now, the guard if is no longer
required here.

Also renamed the `_validate` attr. Maybe it's not needed?

* Fix NER test

* Add test to make sure patterns aren't increasing

* Move test to regression tests
2021-06-03 09:05:26 +02:00
Adriane Boyd
4aa1a7d5a3
Remove unsupported attrs from attrs.IDS (#8132)
The attributes `PROB`, `CLUSTER` and `SENT_END` are not supported by
`Lexeme.get_struct_attr` so should not be included through `attrs.IDS`
as supported attributes in `Doc.to_array` and other methods.
2021-06-02 19:16:57 +10:00
Paul O'Leary McCann
d54631f68b
Fix other open calls without context managers (#8245) 2021-05-31 19:04:29 +10:00
Dhruv Naik
283f64a98d
Fix bug from Entityruler: ent_ids returns None for phrases (#8169)
* bugfix for explosion/spaCy#8168

* add test for explosion/spaCy#8168
2021-05-31 18:38:53 +10:00
Narayan Acharya
6b79714080
Address missing config overrides post load of models (#8208) 2021-05-31 18:36:52 +10:00
Sofie Van Landeghem
fff662e41f
Ensemble textcat with listener (#8012)
* add unit test for two listeners, with a textcat ensemble in the middle

* return zero gradients instead of None in accumulate_gradient
2021-05-31 18:21:06 +10:00
Sofie Van Landeghem
ff91e6dac7
Show warning if entity_ruler runs without patterns (#7807)
* Show warning if entity_ruler runs without patterns

* Show warning if matcher runs without patterns

* fix wording

* unit test for warning once (WIP)

* warn W036 only once

* cleanup

* create filter_warning helper
2021-05-31 18:20:27 +10:00
Paul O'Leary McCann
d1a221a374
Add all symbols in Unicode Currency Symbols block (#8212)
* Add all symbols in Unicode Currency Symbols block

In #8102 it came up that the rupee symbol was treated different from
dollar / euro / yen symbols. This adds many symbols not already
included.

* Fix test

* Fix training test
2021-05-31 18:03:40 +10:00
Ines Montani
5957ab74f7
Merge pull request #8112 from svlandeg/bugfix/replace-trf 2021-05-28 11:35:17 +10:00
Sofie Van Landeghem
202943bc8c
KB & NEL to/from bytes (#8113)
* unit test for pickling KB

* add pickling test for NEL

* KB to_bytes and from_bytes

* NEL to_bytes and from_bytes

* xfail pickle tests for now

* fix docs

* cleanup
2021-05-20 18:11:30 +10:00
Adriane Boyd
2c545c4c5b
Fix offsets in Span.get_lca_matrix (#8116)
* Fix range in Span.get_lca_matrix

Fix the adjusted token index / lca matrix index ranges for
`_get_lca_matrix` for spans.

* The range for `k` should correspond to the adjusted indices in
`lca_matrix` with the `start` indexed at `0`

* Update test for v3.x
2021-05-17 16:54:23 +02:00
Adriane Boyd
b120fb3511
Handle errors while multiprocessing (#8004)
* Handle errors while multiprocessing

Handle errors while multiprocessing without hanging.

* Return the traceback for errors raised while processing a batch, which
  can be handled by the top-level error handler
* Allow for shortened batches due to custom error handlers that ignore
  errors and skip documents

* Define custom components at a higher level

* Also move up custom error handler

* Use simpler component for test

* Switch error type

* Adjust test

* Only call top-level error handler for exceptions

* Register custom test components within tests

Use global functions (so they can be pickled) but register the
components only within the individual tests.
2021-05-17 13:28:39 +02:00
Adriane Boyd
1d59fdbd39
Update Vietnamese tokenizer (#8099)
* Adapt tokenization methods from `pyvi` to preserve text encoding and
whitespace
* Add serialization support similar to Chinese and Japanese

Note: as for Chinese and Japanese, some settings are duplicated in
`config.cfg` and `tokenizer/cfg`.
2021-05-17 18:16:20 +10:00
Adriane Boyd
fe3a4aa846
Add ENT_ID and NORM to DocBin strings (#8054)
Save strings for token attributes `ENT_ID` and `NORM` in `DocBin`
strings.
2021-05-17 18:06:11 +10:00
Adriane Boyd
82fa81d095
Make all Span attrs writable (#8062)
Also allow `Span` string properties `label_` and `kb_id_` to be writable
following #6696.
2021-05-17 18:05:45 +10:00
svlandeg
ece8be4fec extend test to training with replaced tok2vec layer 2021-05-12 11:32:22 +02:00
Adriane Boyd
d5bbd1f94f
Handle partial entities in Span.as_doc (#8055)
* Handle partial entities in Span.as_doc

In `Span.as_doc` replace partial entities at the beginning or end of the
span with missing entity annotation.

Fixes a bug where invalid entity annotation (no initial `B`) was
returned for an initial partial entity.

* Check for empty span in ents conversion

Note: `Span.as_doc()` will still fail on an empty span due to failures
in `Span.vector`.
2021-05-11 17:10:16 +02:00
Paul O'Leary McCann
bdeaf3a18b
Fix/fix en ordinals (#8028)
* Fix #8019

"th" is not the only ordinal ending.

* Add some more ordinal tests
2021-05-07 10:26:42 +02:00
Adriane Boyd
6788d90f61
Preserve existing ENT_KB_ID annotation in NER (#7988)
* Preserve existing ENT_KB_ID annotation in NER

Preserve `ent_kb_id` annotation on existing entity spans, which is not
preserved by the transition system.

* Simplify kb_id assignment

* Simplify further
2021-05-06 18:49:55 +10:00
Adriane Boyd
0a22fed634
Fix span offsets for Matcher(as_spans) on spans (#7992)
Fix returned span offsets for `Matcher(as_spans=True)(span)`.
2021-05-06 18:42:44 +10:00
Adriane Boyd
a71194362f
Fix Docs.from_docs for all empty docs (#8009) 2021-05-05 18:44:14 +02:00
Adriane Boyd
7cf5bd072f
Refactor util.to_ternary_int (#7944)
* Refactor to avoid literal comparison with `is`
* Extend tests
2021-04-29 16:58:54 +02:00
Adriane Boyd
95c0833656
Add training option to set annotations on update (#7767)
* Add training option to set annotations on update

Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.

* Rename to annotates / annotating_components

* Add test for `annotating_components` when training from config

* Add documentation
2021-04-26 16:53:53 +02:00
Sofie Van Landeghem
e0b29f8ef7
Fix scoring normalization (#7629)
* fix scoring normalization

* score weights by total sum instead of per component

* cleanup

* more cleanup
2021-04-26 16:53:38 +02:00
Adriane Boyd
36ecba224e
Set up GPU CI testing (#7293)
* Set up CI for tests with GPU agent

* Update tests for enabled GPU

* Fix steps filename

* Add parallel build jobs as a setting

* Fix test requirements

* Fix install test requirements condition

* Fix pipeline models test

* Reset current ops in prefer/require testing

* Fix more tests

* Remove separate test_models test

* Fix regression 5551

* fix StaticVectors for GPU use

* fix vocab tests

* Fix regression test 5082

* Move azure steps to .github and reenable default pool jobs

* Consolidate/rename azure steps

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-22 14:58:29 +02:00
Adriane Boyd
f68fc29130
Update sent_starts in Example.from_dict (#7847)
* Update sent_starts in Example.from_dict

Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.

Use `Optional[bool]` as the type for sent start values in the docs.

* Use helper function for conversion to ternary ints
2021-04-22 11:32:45 +02:00
Adriane Boyd
f4339f9bff
Fix tokenizer cache flushing (#7836)
* Fix tokenizer cache flushing

Fix/simplify tokenizer init detection in order to fix cache flushing
when properties are modified.

* Remove init reloading logic

* Remove logic disabling `_reload_special_cases` on init
  * Setting `rules` last in `__init__` (as before) means that setting
    other properties doesn't reload any special cases
  * Reset `rules` first in `from_bytes` so that setting other properties
    during deserialization doesn't reload any special cases
    unnecessarily
* Reset all properties in `Tokenizer.from_bytes` to allow any settings
  to be `None`

* Also reset special matcher when special cache is flushed

* Remove duplicate special case validation

* Add test for special cases flushing

* Extend test for tokenizer deserialization of None values
2021-04-22 18:14:57 +10:00
Sofie Van Landeghem
cfad7e21d5
fix config parsing of ints/strings (#7755)
* add few failing tests for parsing integers and strings

* bump thinc to 8.0.3
2021-04-22 18:09:13 +10:00
Adriane Boyd
0e7f94b247
Update Tokenizer.explain with special matches (#7749)
* Update Tokenizer.explain with special matches

Update `Tokenizer.explain` and the pseudo-code in the docs to include
the processing of special cases that contain affixes or whitespace.

* Handle optional settings in explain

* Add test for special matches in explain

Add test for `Tokenizer.explain` for special cases containing affixes.
2021-04-19 19:08:20 +10:00
Adriane Boyd
1ad646cbcf
Improve checks for sourced components (#7490)
* Improve checks for sourced components

* Remove language class checks

* Convert python warning to logger warning

* Remove unused warning

* Fix formatting
2021-04-19 18:36:32 +10:00
Sofie Van Landeghem
8d7af5b2b1
Ensure hyphen in config file works as string value (#7642)
* add test for serializing '-' in a config file

* bump srsly to 2.4.1
2021-04-12 14:35:57 +02:00
Sofie Van Landeghem
27dbbb9903
Bugfix/nel crossing sentence (#7630)
* ensure each entity gets a KB ID, even when it's not within a sentence

* cleanup
2021-04-12 18:08:01 +10:00
Stanislav Schmidt
2516896849
Make vocab update in get_docs deterministic (#7603)
* Make vocab update in get_docs deterministic

The attribute `DocBin.strings` is a set. In `DocBin.get_docs`
a given vocab is updated by iterating over this set.
Iteration over a python set produces an arbitrary ordering,
therefore vocab is updated non-deterministically.

When training (fine-tuning) a spacy model, the base model's
vocabulary will be updated with the new vocabulary in the
training data in exactly the way described above. After
serialization, the file `model/vocab/strings.json` will
be sorted in an arbitrary way. This prevents reproducible
model training.

* Revert "Make vocab update in get_docs deterministic"

This reverts commit d6b87a2f55.

* Sort strings in StringStore serialization

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-09 11:53:13 +02:00
Adriane Boyd
8008e2f75b
Use morph hash in lemmatizer cache key (#7690)
Use the morph hash rather than the `MorphAnalysis` object in the cache
key so that the `Lemmatizer` can be pickled.
2021-04-08 13:22:38 +02:00
Sofie Van Landeghem
204c2f116b
Extend score_spans for overlapping & non-labeled spans (#7209)
* extend span scorer with consider_label and allow_overlap

* unit test for spans y2x overlap

* add score_spans unit test

* docs for new fields in scorer.score_spans

* rename to include_label

* spell out if-else for clarity

* rename to 'labeled'

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-08 12:19:17 +02:00
broaddeep
ee159b8543
Support match alignments (#7321)
* Support match alignments

* change naming from match_alignments to with_alignments, add conditional flow if with_alignments is given, validate with_alignments, add related test case

* remove added errors, utilize bint type, cleanup whitespace

* fix no new line in end of file

* Minor formatting

* Skip alignments processing if as_spans is set

* Add with_alignments to Matcher API docs

* Update website/docs/api/matcher.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-04-08 18:10:14 +10:00
graue70
81fd595223
Fix __add__ method of PRFScore (#7557)
* Add failing test for PRFScore

* Fix erroneous implementation of __add__

* Simplify constructor

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-04-08 17:34:14 +10:00
Adriane Boyd
348d1829c7
Preserve user data for DependencyMatcher on spans (#7528)
* Preserve user data for DependencyMatcher on spans

* Clean underscore in test

* Modify test to use extensions stored in user data
2021-03-30 12:26:22 +02:00
Adriane Boyd
27a48f2802
Fix/update extension copying in Span.as_doc and Doc.from_docs (#7574)
* Adjust custom extension data when copying user data in `Span.as_doc()`
* Restrict `Doc.from_docs()` to adjusting offsets for custom extension
data
  * Update test to use extension
  * (Duplicate bug fix for character offset from #7497)
2021-03-30 09:49:12 +02:00
Adriane Boyd
139f655f34
Merge doc.spans in Doc.from_docs() (#7497)
Merge data from `doc.spans` in `Doc.from_docs()`.

* Fix internal character offset set when merging empty docs (only
affects tokens and spans in `user_data` if an empty doc is in the list
of docs)
2021-03-29 22:34:01 +11:00
Adriane Boyd
d59f968d08
Keep sent starts without parse in retokenization (#7424)
In the retokenizer, only reset sent starts (with
`set_children_from_head`) if the doc is parsed. If there is no parse,
merged tokens have the unset `token.is_sent_start == None` by default after
retokenization.
2021-03-29 22:32:00 +11:00
Adriane Boyd
deffc3a532
Update package requirements tests (#7409)
* Add hypothesis to packages skipped in version check

* Add numpy back to tests following 2df1ab8a
2021-03-11 16:24:31 +01:00
Sofie Van Landeghem
932887b950
textcat scoring fix and multi_label docs (#6974)
* add multi-label textcat to menu

* add infobox on textcat API

* add info to v3 migration guide

* small edits

* further fixes in doc strings

* add infobox to textcat architectures

* add textcat_multilabel to overview of built-in components

* spelling

* fix unrelated warn msg

* Add textcat_multilabel to quickstart [ci skip]

* remove separate documentation page for multilabel_textcategorizer

* small edits

* positive label clarification

* avoid duplicating information in self.cfg and fix textcat.score

* fix multilabel textcat too

* revert threshold to storage in cfg

* revert threshold stuff for multi-textcat

Co-authored-by: Ines Montani <ines@ines.io>
2021-03-09 23:04:22 +11:00
Adriane Boyd
3f3e8110dc
Fix lowercase augmentation (#7336)
* Fix aborted/skipped augmentation for `spacy.orth_variants.v1` if
lowercasing was enabled for an example
* Simplify `spacy.orth_variants.v1` for `Example` vs. `GoldParse`
* Preserve reference tokenization in `spacy.lower_case.v1`
2021-03-09 14:02:32 +11:00
Sofie Van Landeghem
cd70c3cb79
Fixing pretrain (#7342)
* initialize NLP with train corpus

* add more pretraining tests

* more tests

* function to fetch tok2vec layer for pretraining

* clarify parameter name

* test different objectives

* formatting

* fix check for static vectors when using vectors objective

* clarify docs

* logger statement

* fix init_tok2vec and proc.initialize order

* test training after pretraining

* add init_config tests for pretraining

* pop pretraining block to avoid config validation errors

* custom errors
2021-03-09 14:01:13 +11:00
svlandeg
d900c55061 consistently use registry as callable 2021-03-02 17:56:28 +01:00
Sofie Van Landeghem
212f0e779e
Support doc.spans in Example.from_dict (#7197)
* add support for spans in Example.from_dict

* add unit tests

* update error to E879
2021-03-03 01:12:54 +11:00
Ines Montani
635ae55b74
Merge pull request #7237 from adrianeboyd/bugfix/is-cython-func-7224 2021-03-03 00:05:16 +11:00
Adriane Boyd
0efb7413f9 Use make_tempdir instead 2021-03-01 17:54:14 +01:00
Adriane Boyd
e9f7f9a4bc Fix is_cython_func for additional imported code
* Fix `is_cython_func` for imported code loaded under `python_code`
module name
* Add `make_named_tempfile` context manager to test utils to test
loading of imported code
* Add test for validation of `initialize` params in custom module
2021-03-01 16:37:39 +01:00
Sofie Van Landeghem
dd99872bb0
Fix spans weak ref in doc copy (#7225)
* failing unit test

* ensure that doc.spans refers to the copied doc, not the old

* add type info
2021-02-28 12:32:48 +11:00
Sofie Van Landeghem
b92f81d5da
fix NEL config and IO, and n_sents functionality (#7100)
* fix NEL config and IO, and n_sents functionality

* add docs

* fix test
2021-02-22 14:49:52 +11:00