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722 Commits

Author SHA1 Message Date
Ines Montani
604be54a5c Support --code in evaluate CLI [ci skip] 2020-09-29 21:20:56 +02:00
Ines Montani
d3c63b7965 Merge branch 'develop' into feature/prepare 2020-09-29 20:53:05 +02:00
Ines Montani
361f91e286
Merge pull request #6135 from walterhenry/develop-proof 2020-09-29 20:49:06 +02:00
Ines Montani
b486389eec
Update website/docs/api/doc.md 2020-09-29 20:48:43 +02:00
Ines Montani
d7469283c5 Update docs [ci skip] 2020-09-29 16:59:21 +02:00
walterhenry
c1c841940c Merge branch 'develop-proof' of https://github.com/walterhenry/spaCy into develop-proof 2020-09-29 11:47:43 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
walterhenry
3360825e00 Proofreading 
Another round of proofreading. All the API docs have been read through and I've grazed the Usage docs.
 2020-09-28 16:50:15 +02:00
Matthew Honnibal
a976da168c
Support data augmentation in Corpus (#6155) 
* Support data augmentation in Corpus

* Note initial docs for data augmentation

* Add augmenter to quickstart

* Fix flake8

* Format

* Fix test

* Update spacy/tests/training/test_training.py

* Improve data augmentation arguments

* Update templates

* Move randomization out into caller

* Refactor

* Update spacy/training/augment.py

* Update spacy/tests/training/test_training.py

* Fix augment

* Fix test
 2020-09-28 03:03:27 +02:00
Ines Montani
f29d5b9b89 Update docs [ci skip] 2020-09-27 18:39:38 +02:00
Sofie Van Landeghem
009ba14aaf
Fix pretraining in train script (#6143) 
* update pretraining API in train CLI

* bump thinc to 8.0.0a35

* bump to 3.0.0a26

* doc fixes

* small doc fix
 2020-09-25 15:47:10 +02:00
Ines Montani
2aa4d65734 Update docs [ci skip] 2020-09-24 20:41:09 +02:00
Adriane Boyd
3c062b3911
Add MORPH handling to Matcher (#6107) 
* Add MORPH handling to Matcher

* Add `MORPH` to `Matcher` schema
* Rename `_SetMemberPredicate` to `_SetPredicate`
* Add `ISSUBSET` and `ISSUPERSET` operators to `_SetPredicate`
  * Add special handling for normalization and conversion of morph
    values into sets
  * For other attrs, `ISSUBSET` acts like `IN` and `ISSUPERSET` only
    matches for 0 or 1 values

* Update test

* Rename to IS_SUBSET and IS_SUPERSET
 2020-09-24 16:55:09 +02:00
Sofie Van Landeghem
c7eedd3534
updates to NEL functionality (#6132) 
* NEL: read sentences and ents from reference

* fiddling with sent_start annotations

* add KB serialization test

* KB write additional file with strings.json

* score_links function to calculate NEL P/R/F

* formatting

* documentation
 2020-09-24 16:53:59 +02:00
Ines Montani
58dde293ce
Merge pull request #6089 from adrianeboyd/feature/doc-ents-v3-2 2020-09-24 14:44:42 +02:00
Ines Montani
74e1f192b4
Merge pull request #6134 from explosion/feature/training_before_to_disk 2020-09-24 14:44:11 +02:00
Ines Montani
3b58a8be2b Update docs 2020-09-24 14:32:42 +02:00
Ines Montani
88e54caa12 accuracy -> performance 2020-09-24 14:32:35 +02:00
Ines Montani
b92c8aae78 Merge branch 'develop' into pr/6135 2020-09-24 13:44:56 +02:00
walterhenry
3dd5f409ec Proofreading 
Proofread some API docs
 2020-09-24 13:15:28 +02:00
Adriane Boyd
1c63f02f99 Add API docs 2020-09-24 12:51:16 +02:00
Ines Montani
138c8d45db Update docs 2020-09-24 12:43:39 +02:00
Ines Montani
ae51f580c1 Fix handling of score_weights 2020-09-24 10:27:33 +02:00
svlandeg
dd2292793f 'parser' instead of 'deps' for state_type 2020-09-23 16:53:49 +02:00
svlandeg
6c85fab316 state_type and extra_state_tokens instead of nr_feature_tokens 2020-09-23 13:35:09 +02:00
Ines Montani
6ca06cb62c Update docs and formatting [ci skip] 2020-09-23 10:14:27 +02:00
svlandeg
b556a10808 rename converts in_to_out 2020-09-22 11:50:19 +02:00
Ines Montani
f9af7d365c Update docs [ci skip] 2020-09-22 09:45:41 +02:00
Ines Montani
49e80dbcac
Merge pull request #6103 from explosion/chore/tidy-up-tests-docs-get-doc 2020-09-22 09:45:04 +02:00
Adriane Boyd
5fbb8dfcbc Merge remote-tracking branch 'upstream/develop' into docs/various-v3-2 2020-09-22 09:22:58 +02:00
Ines Montani
67fbcb3da5 Tidy up tests and docs 2020-09-21 20:43:54 +02:00
Adriane Boyd
f212303729 Add sent_starts to Doc.__init__ 
Add sent_starts to `Doc.__init__`. Officially specify `is_sent_start`
values but also convert to and accept `sent_start` internally.
 2020-09-21 17:59:09 +02:00
Adriane Boyd
6aa91c7ca0 Make user_data keyword-only 2020-09-21 16:00:06 +02:00
Adriane Boyd
bc02e86494 Extend Doc.__init__ with additional annotation 
Mostly copying from `spacy.tests.util.get_doc`, add additional kwargs to
`Doc.__init__` to initialize the most common doc/token values.
 2020-09-21 13:36:24 +02:00
Adriane Boyd
3aa57ce6c9 Update alignment mode in Doc.char_span docs 2020-09-21 09:07:20 +02:00
Ines Montani
012b3a7096 Update docs [ci skip] 2020-09-20 17:44:58 +02:00
Ines Montani
554c9a2497 Update docs [ci skip] 2020-09-20 12:30:53 +02:00
Sofie Van Landeghem
39872de1f6
Introducing the gpu_allocator (#6091) 
* rename 'use_pytorch_for_gpu_memory' to 'gpu_allocator'

* --code instead of --code-path

* update documentation

* avoid querying the "system" section directly

* add explanation of gpu_allocator to TF/PyTorch section in docs

* fix typo

* fix typo 2

* use set_gpu_allocator from thinc 8.0.0a34

* default null instead of empty string
 2020-09-19 01:17:02 +02:00
Ines Montani
0406200a1e Update docs [ci skip] 2020-09-18 15:13:13 +02:00
Ines Montani
a127fa475e
Merge pull request #6078 from svlandeg/fix/corpus 2020-09-18 14:44:21 +02:00
Ines Montani
d32ce121be Fix docs [ci skip] 2020-09-18 13:41:12 +02:00
Ines Montani
1bb8b4f824 Merge branch 'master' into develop 2020-09-17 17:46:20 +02:00
Ines Montani
2e3ce9f42f Merge branch 'feature/init-config-pretrain' of https://github.com/svlandeg/spaCy into pr/6084 2020-09-17 16:58:49 +02:00
Ines Montani
3d8e010655 Change order 2020-09-17 16:58:46 +02:00
Ines Montani
c4b414b282
Update website/docs/api/cli.md 2020-09-17 16:58:09 +02:00
Sofie Van Landeghem
e5ceec5df0
Update website/docs/api/cli.md 
Co-authored-by: Ines Montani <ines@ines.io>
 2020-09-17 16:56:20 +02:00
Sofie Van Landeghem
127ce0c574
Update website/docs/api/cli.md 
Co-authored-by: Ines Montani <ines@ines.io>
 2020-09-17 16:55:53 +02:00
svlandeg
5fade4feb7 fix cli abbrev 2020-09-17 16:15:20 +02:00
svlandeg
ddfc1fc146 add pretraining option to init config 2020-09-17 16:05:40 +02:00
svlandeg
130ffa5fbf fix typos in docs 2020-09-17 14:59:41 +02:00
svlandeg
0c35885751 generalize corpora, dot notation for dev and train corpus 2020-09-17 11:38:59 +02:00
svlandeg
8cedb2f380 Merge branch 'fix/corpus' of https://github.com/svlandeg/spaCy into fix/corpus 2020-09-17 09:27:55 +02:00
svlandeg
781fae678b Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-17 09:24:36 +02:00
Sofie Van Landeghem
21dcf92964
Update website/docs/api/data-formats.md 
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
 2020-09-17 09:21:36 +02:00
Adriane Boyd
7e4cd7575c
Refactor Docs.is_ flags (#6044) 
* Refactor Docs.is_ flags

* Add derived `Doc.has_annotation` method

  * `Doc.has_annotation(attr)` returns `True` for partial annotation

  * `Doc.has_annotation(attr, require_complete=True)` returns `True` for
    complete annotation

* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`

* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.

Notes on `Doc.has_annotation`:

* `HEAD` is converted to `DEP` because heads don't have an unset state

* Accept `IS_SENT_START` as a synonym of `SENT_START`

Additional changes:

* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`

* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`

* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`

* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`

* Fix call to set_children_form_heads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
 2020-09-17 00:14:01 +02:00
svlandeg
55f8d5478e fix example output 2020-09-15 22:09:30 +02:00
svlandeg
51fa929f47 rewrite train_corpus to corpus.train in config 2020-09-15 21:58:04 +02:00
Ines Montani
0edd695bf6 Update docs 2020-09-15 11:41:49 +02:00
Ines Montani
99549a5ace Fix consistency and update docs 2020-09-15 11:37:37 +02:00
Ines Montani
154752f9c2 Update docs and consistency [ci skip] 2020-09-15 00:32:49 +02:00
Sofie Van Landeghem
3216a33149
positive_label config for textcat (#6062) 
* hook up positive_label in textcat

* unit tests

* documentation

* formatting

* tests

* fix typo

* move verify_config to after begin_training

* revert accidential commit
 2020-09-14 17:08:00 +02:00
Ines Montani
9afb1d9965
Merge pull request #6063 from svlandeg/feature/doc_cleanup [ci skip] 2020-09-14 10:35:43 +02:00
Ines Montani
47acb45850 Update docs [ci skip] 2020-09-13 22:30:33 +02:00
Ines Montani
2e3d067a7b Update docs [ci skip] 2020-09-13 19:29:06 +02:00
Sofie Van Landeghem
744df9814a
define threshold for scoring textcat in TextCat config (#6055) 
* define threshold for scoring textcat in TextCat config

* fix unit test and documentation
 2020-09-13 14:15:52 +02:00
svlandeg
c4f324d5f1 doc fixes 2020-09-12 17:38:54 +02:00
Ines Montani
8b0dabe987 Update docs [ci skip] 2020-09-12 17:05:10 +02:00
Ines Montani
0b2e07215d Support overwriting name on spacy package 2020-09-11 11:38:28 +02:00
svlandeg
97d99f7efa Merge remote-tracking branch 'upstream/develop' into feature/doc-fixes 2020-09-10 11:51:34 +02:00
Ines Montani
15bc3a37b4 Add --branch to project clone 2020-09-10 11:08:15 +02:00
Ines Montani
b7afd09d27 Update formatting [ci skip] 2020-09-10 11:07:09 +02:00
svlandeg
9073d99fc9 fix link to shape inference section 2020-09-10 10:22:59 +02:00
Ines Montani
1955aaaa20
Merge pull request #6045 from svlandeg/feature/more-layers-docs [ci skip] 2020-09-09 21:46:40 +02:00
Ines Montani
2e567a47c2 Update docs and formatting 2020-09-09 21:26:10 +02:00
svlandeg
c89e07927e document individual component API pages 2020-09-09 16:18:38 +02:00
Sofie Van Landeghem
cb66ea7400
Remove simple_ner code (#6041) 
* remove simple_ner code

* remove unused _biluo and _iob files
 2020-09-09 16:11:27 +02:00
svlandeg
a8aa9a8068 document Pipe API details, crossreferences etc 2020-09-09 15:56:27 +02:00
svlandeg
39aa740777 Merge remote-tracking branch 'upstream/develop' into feature/more-layers-docs 2020-09-09 11:59:34 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042) 
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
 2020-09-09 10:31:03 +02:00
Marek Grzenkowicz
a26f864ed3
Clarify how to choose pretrained weights files (closes #6027) [ci skip] (#6039) 2020-09-08 21:13:50 +02:00
svlandeg
bd8f9b188b small fixes 2020-09-08 17:24:36 +02:00
Ines Montani
157caf4dfa WIP: update docs [ci skip] 2020-09-04 16:30:31 +02:00
Ines Montani
f174c7b1f3 Merge branch 'develop' into pr/6018 2020-09-04 15:54:49 +02:00
Ines Montani
864a697e63 Merge branch 'develop' into master-tmp 2020-09-04 13:15:36 +02:00
Adriane Boyd
b927893309
Merge branch 'develop' into feature/dependency-matcher-v3 2020-09-04 13:03:30 +02:00
Ines Montani
4daf138136 Fix alphabetic ordering [ci skip] 2020-09-03 23:01:50 +02:00
Ines Montani
23b7d9cfa3 Prefix span getters 2020-09-03 17:37:06 +02:00
Ines Montani
5afe6447cd registry.assets -> registry.misc 2020-09-03 17:31:14 +02:00
Ines Montani
c063e55eb7 Add prefix to batchers 2020-09-03 17:30:41 +02:00
Ines Montani
804f120361 Don't use registered function version in title 2020-09-03 17:29:47 +02:00
Ines Montani
c53b1433b9 Adjust more arguments [ci skip] 2020-09-03 17:12:24 +02:00
Ines Montani
25a595dc10 Fix typos and wording [ci skip] 2020-09-03 16:37:45 +02:00
Ines Montani
b5a0657fd6 "model" terminology consistency in docs 2020-09-03 13:13:03 +02:00
Adriane Boyd
960d9cfadc Officially support DependencyMatcher 
Add official support for the `DependencyMatcher`. Redesign the pattern
specification. Fix and extend operator implementations. Update API docs
and add usage docs.

Patterns
--------

Refactor pattern structure to:

```
{
  "LEFT_ID": str,
  "REL_OP": str,
  "RIGHT_ID": str,
  "RIGHT_ATTRS": dict,
}
```

The first node contains only `RIGHT_ID` and `RIGHT_ATTRS` and all
subsequent nodes contain all four keys.

New operators
-------------

Because of the way patterns are constructed from left to right, it's
helpful to have `follows` operators along with `precedes` operators. Add
operators for simple precedes / follows alongside immediate precedes /
follows.

* `.*`: precedes
* `;`: immediately follows
* `;*`: follows

Operator fixes
--------------

* `<` and `<<` do not include the node itself
* Fix reversed order for all operators involving linear precedence (`.`,
  all sibling operators)
* Linear precedence operators do not match nodes outside the same parse

Additional fixes
----------------

* Use v3 Matcher API
* Support `get` and `remove`
* Support pickling
 2020-09-02 17:45:29 +02:00
svlandeg
bbaea530f6 sublayers paragraph 2020-09-02 17:36:22 +02:00
Ines Montani
9af82f3f11
Merge pull request #6003 from explosion/feature/matcher-as-spans 2020-08-31 17:50:56 +02:00
Ines Montani
3929431af1 Update docs [ci skip] 2020-08-31 17:06:33 +02:00
Ines Montani
add9de5487 Deprecate (Phrase)Matcher.pipe 2020-08-31 17:01:24 +02:00
svlandeg
2c3b64a567 console logging example 2020-08-31 16:56:13 +02:00
Ines Montani
bca6bf8dda Update docs [ci skip] 2020-08-31 16:39:53 +02:00
Ines Montani
db9f8896f5 Add docs [ci skip] 2020-08-31 16:10:41 +02:00
svlandeg
fe6c08218e fixes 2020-08-31 14:51:49 +02:00
svlandeg
0e0abb0378 fix 2020-08-31 14:50:29 +02:00
svlandeg
56ba691ecd small fixes 2020-08-31 14:46:00 +02:00
svlandeg
e47ea88aeb revert annotations refactor 2020-08-31 14:40:55 +02:00
svlandeg
2c90a06fee some more information about the loggers 2020-08-31 13:43:17 +02:00
svlandeg
c18eb63483 Merge remote-tracking branch 'upstream/develop' into feature/vectors-docs 
# Conflicts:
#	website/docs/usage/embeddings-transformers.md
 2020-08-31 13:21:36 +02:00
Sofie Van Landeghem
ec14744ee4
Rename Transformer listener (#6001) 
* rename to spacy-transformers.TransformerListener

* add some more tok2vec tests

* use select_pipes

* fix docs - annotation setter was not changed in the end
 2020-08-31 12:41:39 +02:00
Ines Montani
9b86312bab Update docs [ci skip] 2020-08-29 18:43:19 +02:00
Adriane Boyd
870774f475
Merge branch 'develop' into docs/morph-usage-v3 2020-08-29 16:00:50 +02:00
Ines Montani
45f46a5c85
Merge pull request #5993 from explosion/feature/disabled-components 2020-08-29 15:58:41 +02:00
Adriane Boyd
f9ed31a757 Update usage docs for lemmatization and morphology 2020-08-29 15:56:50 +02:00
Ines Montani
450bf806b0
Merge pull request #5991 from adrianeboyd/docs/sent-usage-v3 
Update sentence segmentation usage docs
 2020-08-29 12:40:06 +02:00
Ines Montani
66d76f5126 Update docs 2020-08-29 12:36:05 +02:00
svlandeg
5230529de2 add loggers registry & logger docs sections 2020-08-28 21:44:04 +02:00
Adriane Boyd
48df50533d Update sentence segmentation usage docs 
Update sentence segmentation usage docs to incorporate `senter`.
 2020-08-28 10:58:16 +02:00
svlandeg
72a87095d9 add loggers registry 2020-08-27 20:26:28 +02:00
svlandeg
aa9e0c9c39 small fix 2020-08-27 19:56:52 +02:00
svlandeg
8cde6ccb7d Merge remote-tracking branch 'upstream/develop' into feature/vectors-docs 2020-08-27 19:56:09 +02:00
svlandeg
556e975a30 various fixes 2020-08-27 19:24:44 +02:00
Ines Montani
ff4175e839 Add more info to debug config 2020-08-27 18:17:58 +02:00
svlandeg
559b65f2e0 adjust references to null_annotation_setter to trfdata_setter 2020-08-27 09:43:32 +02:00
Ines Montani
696f167478 Add diff example to docs [ci skip] 2020-08-26 15:57:54 +02:00
Adriane Boyd
90d88729e0
Add AttributeRuler.score (#5963) 
* Add AttributeRuler.score

Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.

Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.

* Update docs
 2020-08-26 15:39:30 +02:00
svlandeg
ec069627fe rename to TransformerListener 2020-08-26 13:31:01 +02:00
Ines Montani
627617a079 Tidy up and add docs [ci skip] 2020-08-26 13:24:55 +02:00
svlandeg
15902c5aa2 fix link 2020-08-26 11:51:57 +02:00
svlandeg
feb86d5206 clarify default 2020-08-26 11:21:30 +02:00
Ines Montani
8ac5ef1284 Update docs 2020-08-25 11:54:37 +02:00
Matthew Honnibal
e559867605
Allow spacy project to push and pull to/from remote storage (#5949) 
* Add utils for working with remote storage

* WIP add remote_cache for project

* WIP add push and pull commands

* Use pathy in remote_cache

* Updarte util

* Update remote_cache

* Update util

* Update project assets

* Update pull script

* Update push script

* Fix type annotation in util

* Work on remote storage

* Remove site and env hash

* Fix imports

* Fix type annotation

* Require pathy

* Require pathy

* Fix import

* Add a util to handle project variable substitution

* Import push and pull commands

* Fix pull command

* Fix push command

* Fix tarfile in remote_storage

* Improve printing

* Fiddle with status messages

* Set version to v3.0.0a9

* Draft docs for spacy project remote storages

* Update docs [ci skip]

* Use Thinc config to simplify and unify template variables

* Auto-format

* Don't import Pathy globally for now

Causes slow and annoying Google Cloud warning

* Tidy up test

* Tidy up and update tests

* Update to latest Thinc

* Update docs

* variables -> vars

* Update docs [ci skip]

* Update docs [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
 2020-08-23 18:32:09 +02:00
Ines Montani
c7c9b0451f Update docs [ci skip] 2020-08-22 13:52:52 +02:00
Ines Montani
71aeae89c5
Merge pull request #5948 from svlandeg/feature/docs-docs-docs [ci skip] 2020-08-22 12:18:47 +02:00
Ines Montani
f102164a1f Update docs [ci skip] 2020-08-21 19:34:06 +02:00
svlandeg
1b7cfa7347 Merge remote-tracking branch 'upstream/develop' into feature/docs-docs-docs 2020-08-21 18:36:18 +02:00
svlandeg
dc98f69b57 alphabetize registries 2020-08-21 18:10:21 +02:00
svlandeg
518a1f97f3 remove outdated TODO's 2020-08-21 17:55:15 +02:00
svlandeg
e92bd6e1c1 alphabetize training lists 2020-08-21 17:42:19 +02:00
Ines Montani
74cb6d39d0 Update docs [ci skip] 2020-08-21 16:11:38 +02:00
Matthew Honnibal
f5bcc10268 Update architectures 2020-08-21 15:34:54 +02:00
Matthew Honnibal
7ed8f4504b Update API docs for architectures 2020-08-21 15:22:19 +02:00
Ines Montani
52bd3a8b48 Update docs [ci skip] 2020-08-21 13:22:59 +02:00
Ines Montani
e60442d83a Adjust label casing in displaCy NER visualizer (resolves #4866) 
- Accept any case for label names in ents and colors option, even if actual predicted label uses different casing
- Don't text-transform: uppercase visually, if it's important to users that the label is represented as-is in the UI
 2020-08-21 11:51:31 +02:00
Ines Montani
04e4d59235 Update docs [ci skip] 2020-08-20 16:17:25 +02:00
Sofie Van Landeghem
410b54e10e
Update website/docs/api/data-formats.md 
Co-authored-by: Ines Montani <ines@ines.io>
 2020-08-20 11:15:34 +02:00
svlandeg
ae719b354f fix typos 2020-08-20 10:20:40 +02:00
svlandeg
f728c00cbb Merge remote-tracking branch 'upstream/develop' into feature/update-more-docs 
# Conflicts:
#	website/docs/api/data-formats.md
 2020-08-20 10:02:13 +02:00
svlandeg
229033831a add explanation of raw_text 2020-08-20 10:00:45 +02:00
Ines Montani
ea6640ea72
Merge pull request #5939 from explosion/feature/thinc-v8.0.0a28 
Update Thinc and config variables
 2020-08-19 21:14:36 +02:00
svlandeg
09f3cfc985 add version 2020-08-19 19:58:45 +02:00
svlandeg
7d9f00bdbf waltzing schedule 2020-08-19 19:53:00 +02:00