* Draft spancat model
* Add spancat model
* Add test for extract_spans
* Add extract_spans layer
* Upd extract_spans
* Add spancat model
* Add test for spancat model
* Upd spancat model
* Update spancat component
* Upd spancat
* Update spancat model
* Add quick spancat test
* Import SpanCategorizer
* Fix SpanCategorizer component
* Import SpanGroup
* Fix span extraction
* Fix import
* Fix import
* Upd model
* Update spancat models
* Add scoring, update defaults
* Update and add docs
* Fix type
* Update spacy/ml/extract_spans.py
* Auto-format and fix import
* Fix comment
* Fix type
* Fix type
* Update website/docs/api/spancategorizer.md
* Fix comment
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Better defense
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix labels list
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/ml/extract_spans.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/pipeline/spancat.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Set annotations during update
* Set annotations in spancat
* fix imports in test
* Update spacy/pipeline/spancat.py
* replace MaxoutLogistic with LinearLogistic
* fix config
* various small fixes
* remove set_annotations parameter in update
* use our beloved tupley format with recent support for doc.spans
* bugfix to allow renaming the default span_key (scores weren't showing up)
* use different key in docs example
* change defaults to better-working parameters from project (WIP)
* register spacy.extract_spans.v1 for legacy purposes
* Upd dev version so can build wheel
* layers instead of architectures for smaller building blocks
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Include additional scores from overrides in combined score weights
* Parameterize spans key in scoring
Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.
* Use the (intentionally very short) default spans key `sc` in the
`SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
the key in the `getter` instead.
Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.
* Update website/docs/api/scorer.md
* Fix scorer for spans key containing underscore
* Increment version
* Add Spans to Evaluate CLI (#8439)
* Add Spans to Evaluate CLI
* Change to spans_key
* Add spans per_type output
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix spancat GPU issues (#8455)
* Fix GPU issues
* Require thinc >=8.0.6
* Switch to glorot_uniform_init
* Fix and test ngram suggester
* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
* Use minor version for compatibility check
* Use minor version of compatibility table
* Soften warning message about incompatible models
* Add test for presence of current version in compatibility table
* Add test for download compatibility table
* Use minor version of lower pin in error message if possible
* Fall back to spacy_git_version if available
* Fix unknown version string
* Don't use the same vocab for source models
The source models should not be loaded with the vocab from the current
pipeline because this loads the vectors from the source model into the
current vocab.
The strings are all copied in `Language.create_pipe_from_source`, so if
the vectors are configured correctly in the current pipeline, the
sourced component will work as expected. If there is a vector mismatch,
a warning is shown. (It's not possible to inspect whether the vectors
are actually used by the component, so a warning is the best option.)
* Update comment on source model loading
* Copy rather than move files to top-level of package
* Add all files to `MANIFEST.in` (primarily for older versions of pip)
* Include the `README.md` contents as `long_description` in the setup
* Support a cfg field in transition system
* Make NER 'has gold' check use right alignment for span
* Pass 'negative_samples_key' property into NER transition system
* Add field for negative samples to NER transition system
* Check neg_key in NER has_gold
* Support negative examples in NER oracle
* Test for negative examples in NER
* Fix name of config variable in NER
* Remove vestiges of old-style partial annotation
* Remove obsolete tests
* Add comment noting lack of support for negative samples in parser
* Additions to "neg examples" PR (#8201)
* add custom error and test for deprecated format
* add test for unlearning an entity
* add break also for Begin's cost
* add negative_samples_key property on Parser
* rename
* extend docs & fix some older docs issues
* add subclass constructors, clean up tests, fix docs
* add flaky test with ValueError if gold parse was not found
* remove ValueError if n_gold == 0
* fix docstring
* Hack in environment variables to try out training
* Remove hack
* Remove NER hack, and support 'negative O' samples
* Fix O oracle
* Fix transition parser
* Remove 'not O' from oracle
* Fix NER oracle
* check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation
* use set instead of list in consistency check
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* implement textcat resizing for TextCatCNN
* resizing textcat in-place
* simplify code
* ensure predictions for old textcat labels remain the same after resizing (WIP)
* fix for softmax
* store softmax as attr
* fix ensemble weight copy and cleanup
* restructure slightly
* adjust documentation, update tests and quickstart templates to use latest versions
* extend unit test slightly
* revert unnecessary edits
* fix typo
* ensemble architecture won't be resizable for now
* use resizable layer (WIP)
* revert using resizable layer
* resizable container while avoid shape inference trouble
* cleanup
* ensure model continues training after resizing
* use fill_b parameter
* use fill_defaults
* resize_layer callback
* format
* bump thinc to 8.0.4
* bump spacy-legacy to 3.0.6
* Added Italian POS-aware lemmatizer.
Also added the code used to build the lookup tables by POS.
* Create gtoffoli.md
* Add imports and format
* Remove helper script
* Use lemma_lookup instead of lemma_lookup_legacy
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
To avoid config errors during training when `[corpora.pretrain.path]` is
`None` with the default `spacy.JsonlCorpus.v1` reader, make the reader
path optional, similar to `spacy.Corpus.v1`.
* Change span lemmas to use original whitespace (fix#8368)
This is a redo of #8371 based off master.
The test for this required some changes to existing tests. I don't think
the changes were significant but I'd like someone to check them.
* Remove mystery docstring
This sentence was uncompleted for years, and now we will never know how
it ends.
* Fill in deps if not provided with heads
Before this change, if heads were passed without deps they would be
silently ignored, which could be confusing. See #8334.
* Use "dep" instead of a blank string
This is the customary placeholder dep. It might be better to show an
error here instead though.
* Throw error on heads without deps
* Add a test
* Fix tests
* Formatting
* Fix all tests
* Fix a test I missed
* Revise error message
* Clean up whitespace
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update Catalan language data
Update Catalan language data based on contributions from the Text Mining
Unit at the Barcelona Supercomputing Center:
https://github.com/TeMU-BSC/spacy4release/tree/main/lang_data
* Update tokenizer settings for UD Catalan AnCora
Update for UD Catalan AnCora v2.7 with merged multi-word tokens.
* Update test
* Move prefix patternt to more generic infix pattern
* Clean up
For the Russian and Ukrainian lemmatizers, restrict the `pymorphy2`
requirement to the mode `pymorphy2` so that lookup or other lemmatizer
modes can be loaded without installing `pymorphy2`.
* Show warning if entity_ruler runs without patterns
* Show warning if matcher runs without patterns
* fix wording
* unit test for warning once (WIP)
* warn W036 only once
* cleanup
* create filter_warning helper
* Don't add duplicate patterns (fix#8216)
* Refactor EntityRuler init
This simplifies the EntityRuler init code. This is helpful as prep for
allowing the EntityRuler to reset itself.
* Make EntityRuler.clear reset matchers
Includes a new test for this.
* Tidy PhraseMatcher instantiation
Since the attr can be None safely now, the guard if is no longer
required here.
Also renamed the `_validate` attr. Maybe it's not needed?
* Fix NER test
* Add test to make sure patterns aren't increasing
* Move test to regression tests
* "y" etc.
Many changes described in pull request
* Update spacy/lang/fr/stop_words.py
* Update spacy/lang/fr/stop_words.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
The attributes `PROB`, `CLUSTER` and `SENT_END` are not supported by
`Lexeme.get_struct_attr` so should not be included through `attrs.IDS`
as supported attributes in `Doc.to_array` and other methods.
* Show warning if entity_ruler runs without patterns
* Show warning if matcher runs without patterns
* fix wording
* unit test for warning once (WIP)
* warn W036 only once
* cleanup
* create filter_warning helper
* Add all symbols in Unicode Currency Symbols block
In #8102 it came up that the rupee symbol was treated different from
dollar / euro / yen symbols. This adds many symbols not already
included.
* Fix test
* Fix training test
The behavior of `spacy.Corpus.v1` is unexpected enough for `max_length
!= 0` that `0` is a better default for users creating a new config with
the quickstart.
If not, documents are skipped, sometimes the entire corpus is skipped,
and sometimes documents are (quite unexpectedly for your average user)
split into sentences.
* unit test for pickling KB
* add pickling test for NEL
* KB to_bytes and from_bytes
* NEL to_bytes and from_bytes
* xfail pickle tests for now
* fix docs
* cleanup
* Fix range in Span.get_lca_matrix
Fix the adjusted token index / lca matrix index ranges for
`_get_lca_matrix` for spans.
* The range for `k` should correspond to the adjusted indices in
`lca_matrix` with the `start` indexed at `0`
* Update test for v3.x
* custom warning if the doc_bin is too large
* cleanup
* Update spacy/errors.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* fix numbering
* fixing numbering once more
* fixing this seems to be pretty hard
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Handle errors while multiprocessing
Handle errors while multiprocessing without hanging.
* Return the traceback for errors raised while processing a batch, which
can be handled by the top-level error handler
* Allow for shortened batches due to custom error handlers that ignore
errors and skip documents
* Define custom components at a higher level
* Also move up custom error handler
* Use simpler component for test
* Switch error type
* Adjust test
* Only call top-level error handler for exceptions
* Register custom test components within tests
Use global functions (so they can be pickled) but register the
components only within the individual tests.
* Check for unsupported cats values
* Only show labels if train/dev mismatched
* Don't show label counts (only counting positive labels seems odd)
* Use warnings for mismatched train/dev labels
* Adapt tokenization methods from `pyvi` to preserve text encoding and
whitespace
* Add serialization support similar to Chinese and Japanese
Note: as for Chinese and Japanese, some settings are duplicated in
`config.cfg` and `tokenizer/cfg`.
* Handle partial entities in Span.as_doc
In `Span.as_doc` replace partial entities at the beginning or end of the
span with missing entity annotation.
Fixes a bug where invalid entity annotation (no initial `B`) was
returned for an initial partial entity.
* Check for empty span in ents conversion
Note: `Span.as_doc()` will still fail on an empty span due to failures
in `Span.vector`.
* Preserve existing ENT_KB_ID annotation in NER
Preserve `ent_kb_id` annotation on existing entity spans, which is not
preserved by the transition system.
* Simplify kb_id assignment
* Simplify further
This came up in #7878, but if --resume-path is a directory then loading
the weights will fail. On Linux this will give a straightforward error
message, but on Windows it gives "Permission Denied", which is
confusing.
* Fix percent unk display
This was showing (ratio %), so 10% would show as 0.10%. Fix by
multiplying ration by 100.
Might want to add a warning if this is over a threshold.
* Only show whole-integer percents
* Add training option to set annotations on update
Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.
* Rename to annotates / annotating_components
* Add test for `annotating_components` when training from config
* Add documentation
* Add empty lines at the end of Python files
* Only prepend the lang code if it's not there already
* Update spacy/cli/package.py
* fix whitespace stripping
* Set up CI for tests with GPU agent
* Update tests for enabled GPU
* Fix steps filename
* Add parallel build jobs as a setting
* Fix test requirements
* Fix install test requirements condition
* Fix pipeline models test
* Reset current ops in prefer/require testing
* Fix more tests
* Remove separate test_models test
* Fix regression 5551
* fix StaticVectors for GPU use
* fix vocab tests
* Fix regression test 5082
* Move azure steps to .github and reenable default pool jobs
* Consolidate/rename azure steps
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
* Add callback to copy vocab/tokenizer from model
Add callback `spacy.copy_from_base_model.v1` to copy the tokenizer
settings and/or vocab (including vectors) from a base model.
* Move spacy.copy_from_base_model.v1 to spacy.training.callbacks
* Add documentation
* Modify to specify model as tokenizer and vocab params
* Update sent_starts in Example.from_dict
Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.
Use `Optional[bool]` as the type for sent start values in the docs.
* Use helper function for conversion to ternary ints
* Fix tokenizer cache flushing
Fix/simplify tokenizer init detection in order to fix cache flushing
when properties are modified.
* Remove init reloading logic
* Remove logic disabling `_reload_special_cases` on init
* Setting `rules` last in `__init__` (as before) means that setting
other properties doesn't reload any special cases
* Reset `rules` first in `from_bytes` so that setting other properties
during deserialization doesn't reload any special cases
unnecessarily
* Reset all properties in `Tokenizer.from_bytes` to allow any settings
to be `None`
* Also reset special matcher when special cache is flushed
* Remove duplicate special case validation
* Add test for special cases flushing
* Extend test for tokenizer deserialization of None values
* Replace negative rows with 0 in StaticVectors
Replace negative row indices with 0-vectors in `StaticVectors`.
* Increase versions related to StaticVectors
* Increase versions of all architctures and layers related to
`StaticVectors`
* Improve efficiency of 0-vector operations
Parallel `spacy-legacy` PR: https://github.com/explosion/spacy-legacy/pull/5
* Update config defaults to new versions
* Update docs
* Update Tokenizer.explain with special matches
Update `Tokenizer.explain` and the pseudo-code in the docs to include
the processing of special cases that contain affixes or whitespace.
* Handle optional settings in explain
* Add test for special matches in explain
Add test for `Tokenizer.explain` for special cases containing affixes.
* Set catalogue lower pin to v2.0.2
* Update importlib-metadata pins to match
* Require catalogue v2.0.3
Switch to vendored `importlib-metadata` v3.2.0 provided by `catalogue`.
* ensure vectors data is stored on right device
* ensure the added vector is on the right device
* move vector to numpy before iterating
* move best_rows to numpy before iterating
* Terminology: deprecated vs obsolete
Typically, deprecated is used for functionality that is bound to become unavailable but that can still be used. Obsolete is used for features that have been removed. In E941, I think what is meant is "obsolete" since loading a model by a shortcut simply does not work anymore (and throws an error). This is different from downloading a model with a shortcut, which is deprecated but still works.
In light of this, perhaps all other error codes should be checked as well.
* clarify that the link command is removed and not just deprecated
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
* Update debug data further for v3
* Remove new/existing label distinction (new labels are not immediately
distinguishable because the pipeline is already initialized)
* Warn on missing labels in training data for all components except parser
* Separate textcat and textcat_multilabel sections
* Add section for morphologizer
* Reword missing label warnings
* Make vocab update in get_docs deterministic
The attribute `DocBin.strings` is a set. In `DocBin.get_docs`
a given vocab is updated by iterating over this set.
Iteration over a python set produces an arbitrary ordering,
therefore vocab is updated non-deterministically.
When training (fine-tuning) a spacy model, the base model's
vocabulary will be updated with the new vocabulary in the
training data in exactly the way described above. After
serialization, the file `model/vocab/strings.json` will
be sorted in an arbitrary way. This prevents reproducible
model training.
* Revert "Make vocab update in get_docs deterministic"
This reverts commit d6b87a2f55.
* Sort strings in StringStore serialization
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* extend span scorer with consider_label and allow_overlap
* unit test for spans y2x overlap
* add score_spans unit test
* docs for new fields in scorer.score_spans
* rename to include_label
* spell out if-else for clarity
* rename to 'labeled'
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Data in the JSON format is split into sentences, and each sentence is
saved with is_sent_start flags. Currently the flags are 1 for the first
token and 0 for the others. When deserialized this results in a pattern
of True, None, None, None... which makes single-sentence documents look
as though they haven't had sentence boundaries set.
Since items saved in JSON format have been split into sentences already,
the is_sent_start values should all be True or False.
* Support match alignments
* change naming from match_alignments to with_alignments, add conditional flow if with_alignments is given, validate with_alignments, add related test case
* remove added errors, utilize bint type, cleanup whitespace
* fix no new line in end of file
* Minor formatting
* Skip alignments processing if as_spans is set
* Add with_alignments to Matcher API docs
* Update website/docs/api/matcher.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Support infinite generators for training corpora
Support a training corpus with an infinite generator in the `spacy
train` training loop:
* Revert `create_train_batches` to the state where an infinite generator
can be used as the in the first epoch of exactly one epoch without
resulting in a memory leak (`max_epochs != 1` will still result in a
memory leak)
* Move the shuffling for the first epoch into the corpus reader,
renaming it to `spacy.Corpus.v2`.
* Switch to training option for shuffling in memory
Training loop:
* Add option `training.shuffle_train_corpus_in_memory` that controls
whether the corpus is loaded in memory once and shuffled in the training
loop
* Revert changes to `create_train_batches` and rename to
`create_train_batches_with_shuffling` for use with `spacy.Corpus.v1` and
a corpus that should be loaded in memory
* Add `create_train_batches_without_shuffling` for a corpus that
should not be shuffled in the training loop: the corpus is merely
batched during training
Corpus readers:
* Restore `spacy.Corpus.v1`
* Add `spacy.ShuffledCorpus.v1` for a corpus shuffled in memory in the
reader instead of the training loop
* In combination with `shuffle_train_corpus_in_memory = False`, each
epoch could result in a different augmentation
* Refactor create_train_batches, validation
* Rename config setting to `training.shuffle_train_corpus`
* Refactor to use a single `create_train_batches` method with a
`shuffle` option
* Only validate `get_examples` in initialize step if:
* labels are required
* labels are not provided
* Switch back to max_epochs=-1 for streaming train corpus
* Use first 100 examples for stream train corpus init
* Always check validate_get_examples in initialize
* Add failing test for PRFScore
* Fix erroneous implementation of __add__
* Simplify constructor
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Adjust custom extension data when copying user data in `Span.as_doc()`
* Restrict `Doc.from_docs()` to adjusting offsets for custom extension
data
* Update test to use extension
* (Duplicate bug fix for character offset from #7497)
Merge data from `doc.spans` in `Doc.from_docs()`.
* Fix internal character offset set when merging empty docs (only
affects tokens and spans in `user_data` if an empty doc is in the list
of docs)
In the retokenizer, only reset sent starts (with
`set_children_from_head`) if the doc is parsed. If there is no parse,
merged tokens have the unset `token.is_sent_start == None` by default after
retokenization.
* Add util method for check
* Add new languages to list with lexeme norm tables
* Add check to all relevant components
* Add config details to warning message
Note that we're not actually inspecting the model config to see if
`NORM` is used as an attribute, so it may warn in cases where it's not
relevant.
See here:
https://github.com/explosion/spaCy/discussions/7463
Still need to check if there are any side effects of listeners being
present but not in the pipeline, but this commit will silence the
warnings.
* To allow default lookup lemmatization with a blank Russian model,
rename pymorphy2 lookup mode to `pymorphy2_lookup`
* Bug fix: update pymorphy2 lookup lemmatize to return list rather than
string
* add multi-label textcat to menu
* add infobox on textcat API
* add info to v3 migration guide
* small edits
* further fixes in doc strings
* add infobox to textcat architectures
* add textcat_multilabel to overview of built-in components
* spelling
* fix unrelated warn msg
* Add textcat_multilabel to quickstart [ci skip]
* remove separate documentation page for multilabel_textcategorizer
* small edits
* positive label clarification
* avoid duplicating information in self.cfg and fix textcat.score
* fix multilabel textcat too
* revert threshold to storage in cfg
* revert threshold stuff for multi-textcat
Co-authored-by: Ines Montani <ines@ines.io>
* Fix aborted/skipped augmentation for `spacy.orth_variants.v1` if
lowercasing was enabled for an example
* Simplify `spacy.orth_variants.v1` for `Example` vs. `GoldParse`
* Preserve reference tokenization in `spacy.lower_case.v1`
* initialize NLP with train corpus
* add more pretraining tests
* more tests
* function to fetch tok2vec layer for pretraining
* clarify parameter name
* test different objectives
* formatting
* fix check for static vectors when using vectors objective
* clarify docs
* logger statement
* fix init_tok2vec and proc.initialize order
* test training after pretraining
* add init_config tests for pretraining
* pop pretraining block to avoid config validation errors
* custom errors
* Fix patience for identical scores
Fix training patience so that the earliest best step is chosen for
identical max scores.
* Restore break, remove print
* Explicitly define best_step for clarity
* Add hint for --gpu-id to CLI device info
If the user has `cupy` and an available GPU, add a hint about using
`--gpu-id 0` to the CLI output.
* Undo change to original CPU message
* Fix `is_cython_func` for imported code loaded under `python_code`
module name
* Add `make_named_tempfile` context manager to test utils to test
loading of imported code
* Add test for validation of `initialize` params in custom module
Fix class variable and init for `UkrainianLemmatizer` so that it loads
the `uk` dictionaries rather than having the parent `RussianLemmatizer`
override with the `ru` settings.
Now that `nlp.evaluate()` does not modify the examples, rerun the
pipeline on the (limited) texts in order to provide the predicted
annotation in the displacy output option.
* Add test for #7035
* Update test for issue 7056
* Fix test
* Fix transitions method used in testing
* Fix state eol detection when rebuffer
* Clean up redundant fix
* Add regression test
* Run PhraseMatcher on Spans
* Add test for PhraseMatcher on Spans and Docs
* Add SCA
* Add test with 3 matches in Doc, 1 match in Span
* Update docs
* Use doc.length for find_matches in tokenizer
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Now that the initialize step is fully implemented, the source of E923 is
typically missing or improperly converted/formatted data rather than a
bug in spaCy, so rephrase the error and message and remove the prompt to
open an issue.
```python
def test_vocab_lexeme_add_flag_auto_id(en_vocab):
is_len4 = en_vocab.add_flag(lambda string: len(string) == 4)
assert en_vocab["1999"].check_flag(is_len4) is True
assert en_vocab["1999"].check_flag(IS_DIGIT) is True
assert en_vocab["199"].check_flag(is_len4) is False
> assert en_vocab["199"].check_flag(IS_DIGIT) is True
E assert False is True
E + where False = <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840>(3)
E + where <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840> = <spacy.lexeme.Lexeme object at 0x7fa155c36840>.check_flag
spacy/tests/vocab_vectors/test_lexeme.py:49: AssertionError
```
> `pytest==6.1.1`
>
> `numpy==1.19.2`
>
> `Python version: 3.8.3`
To reproduce the error, run `pytest --random-order-bucket=global --random-order-seed=170158 -v spacy/tests`
If `test_vocab_lexeme_add_flag_auto_id` is run after `test_vocab_lexeme_add_flag_provided_id`, it fails.
It seems like `test_vocab_lexeme_add_flag_provided_id` uses the `IS_DIGIT` bit for testing purposes but does not reset the bit.
This solution seems to work but, if anyone has a better fix, please let me know and I will integrate it.
* add capture argument to project_run and run_commands
* git bump to 3.0.1
* Set version to 3.0.1.dev0
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
When `--no-cache-dir` is present, it prevents caching to properly function.
If the user still wants to do this, there is the possibility to pass options with `user_pip_args`.
But you should not enforce options like these. In my case this is preventing some docker build (using buildkit caching) to have proper caching of models.
Instead of silently using only the first token in each matched span:
* Forbid `OP: ?/*/+` through `DependencyMatcher` validation
* As a fail-safe, add warning if a token match that's not exactly one
token long is found by a token pattern.
* add error handler for pipe methods
* add unit tests
* remove pipe method that are the same as their base class
* have Language keep track of a default error handler
* cleanup
* formatting
* small refactor
* add documentation
* Initial Spanish lemmatizer
* Handle merged verb+pron(s) multi-word tokens
* Use VERB for AUX rule lookup
* Add morph to lemma cache key
* Fix aux lookups, minor refactoring
* Improve verb+pron handling
* Move verb+pron handling into its own method
* Check for exceptions (primarily for se)
* Collect pronouns in the same (not reversed) order
* Only add modified possible lemmas
* Fix `spacy.util.minibatch` when the size iterator is finished (#6745)
* Skip 0-length matches (#6759)
Add hack to prevent matcher from returning 0-length matches.
* support IS_SENT_START in PhraseMatcher (#6771)
* support IS_SENT_START in PhraseMatcher
* add unit test and friendlier error
* use IDS.get instead
* ensure span.text works for an empty span (#6772)
* Remove unicode_literals
Co-authored-by: Santiago Castro <bryant@montevideo.com.uy>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow output_path to be None during training
* Fix cat scoring (?)
* Improve error message for weighted None score
* Improve messages
So we can call this in other places etc.
* FIx output path check
* Use latest wasabi
* Revert "Improve error message for weighted None score"
This reverts commit 7059926763.
* Exclude None scores from final score by default
It's otherwise very difficult to keep track of the score weights if we modify a config programmatically, source components etc.
* Update warnings and use logger.warning
* Spacy Cli info method causing backward compatibility issues #6791
fix backward compatibility by setting default value to exclude in info
method.
* setting empty list as default argument is dangerous.
so setting default to None and then setting it to emptylist, if None.
Reference : https://nikos7am.com/posts/mutable-default-arguments/
* Adding contributor agreement for user werew
* [DependencyMatcher] Comment and clean code
* [DependencyMatcher] Use defaultdicts
* [DependencyMatcher] Simplify _retrieve_tree method
* [DependencyMatcher] Remove prepended underscores
* [DependencyMatcher] Address TODO and move grouping of token's positions out of the loop
* [DependencyMatcher] Remove _nodes attribute
* [DependencyMatcher] Use enumerate in _retrieve_tree method
* [DependencyMatcher] Clean unused vars and use camel_case naming
* [DependencyMatcher] Memoize node+operator map
* Add root property to Token
* [DependencyMatcher] Groups matches by root
* [DependencyMatcher] Remove unused _keys_to_token attribute
* [DependencyMatcher] Use a list to map tokens to matcher's keys
* [DependencyMatcher] Remove recursion
* [DependencyMatcher] Use a generator to retrieve matches
* [DependencyMatcher] Remove unused memory pool
* [DependencyMatcher] Hide private methods and attributes
* [DependencyMatcher] Improvements to the matches validation
* Apply suggestions from code review
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* [DependencyMatcher] Fix keys_to_position_maps
* Remove Token.root property
* [DependencyMatcher] Remove functools' lru_cache
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* warn when frozen components break listener pattern
* few notes in the documentation
* update arg name
* formatting
* cleanup
* specify listeners return type
* raise NotImplementedError when noun_chunks iterator is not implemented
* bring back, fix and document span.noun_chunks
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add long_token_splitter component
Add a `long_token_splitter` component for use with transformer
pipelines. This component splits up long tokens like URLs into smaller
tokens. This is particularly relevant for pretrained pipelines with
`strided_spans`, since the user can't change the length of the span
`window` and may not wish to preprocess the input texts.
The `long_token_splitter` splits tokens that are at least
`long_token_length` tokens long into smaller tokens of `split_length`
size.
Notes:
* Since this is intended for use as the first component in a pipeline,
the token splitter does not try to preserve any token annotation.
* API docs to come when the API is stable.
* Adjust API, add test
* Fix name in factory
Add all strings from the source model when adding a pipe from a source
model.
Minor:
* Skip `disable=["vocab", "tokenizer"]` when loading a source model from
the config, since this doesn't do anything and is misleading.
* Handle unset token.morph in Morphologizer
Handle unset `token.morph` in `Morphologizer.initialize` and
`Morphologizer.get_loss`. If both `token.morph` and `token.pos` are
unset, treat the annotation as missing rather than empty.
* Add token.has_morph()
* Override language defaults for null token and URL match
When the serialized `token_match` or `url_match` is `None`, override the
language defaults to preserve `None` on deserialization.
* Fix fixtures in tests
* Draft out initial Spans data structure
* Initial span group commit
* Basic span group support on Doc
* Basic test for span group
* Compile span_group.pyx
* Draft addition of SpanGroup to DocBin
* Add deserialization for SpanGroup
* Add tests for serializing SpanGroup
* Fix serialization of SpanGroup
* Add EdgeC and GraphC structs
* Add draft Graph data structure
* Compile graph
* More work on Graph
* Update GraphC
* Upd graph
* Fix walk functions
* Let Graph take nodes and edges on construction
* Fix walking and getting
* Add graph tests
* Fix import
* Add module with the SpanGroups dict thingy
* Update test
* Rename 'span_groups' attribute
* Try to fix c++11 compilation
* Fix test
* Update DocBin
* Try to fix compilation
* Try to fix graph
* Improve SpanGroup docstrings
* Add doc.spans to documentation
* Fix serialization
* Tidy up and add docs
* Update docs [ci skip]
* Add SpanGroup.has_overlap
* WIP updated Graph API
* Start testing new Graph API
* Update Graph tests
* Update Graph
* Add docstring
Co-authored-by: Ines Montani <ines@ines.io>
Validate both `[initialize]` and `[training]` in `debug data` and
`nlp.initialize()` with separate config validation error blocks that
indicate which block of the config is being validated.
Add `initialize.before_init` and `initialize.after_init` callbacks to
the config. The `initialize.before_init` callback is a place to
implement one-time tokenizer customizations that are then saved with the
model.
* Update stop_words.py
Added three aditional stopwords: "a" and "o" that means "the", and "e" that means "and"
* Create cristianasp.md
* zero edit to push CI
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* fix TorchBiLSTMEncoder documentation
* ensure the types of the encoding Tok2vec layers are correct
* update references from v1 to v2 for the new architectures
* add syntax iterators for danish
* add test noun chunks for danish syntax iterators
* add contributor agreement
* update da syntax iterators to remove nested chunks
* add tests for da noun chunks
* Fix test
* add missing import
* fix example
* Prevent overlapping noun chunks
Prevent overlapping noun chunks by tracking the end index of the
previous noun chunk span.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* clean up of ner tests
* beam_parser tests
* implement get_beam_parses and scored_parses for the dep parser
* we don't have to add the parse if there are no arcs
* add convenience method to determine tok2vec width in a model
* fix transformer tok2vec dimensions in TextCatEnsemble architecture
* init function should not be nested to avoid pickle issues
* small fixes and formatting
* bring test_issue4313 up-to-date, currently fails
* formatting
* add get_beam_parses method back
* add scored_ents function
* delete tag map
Instead of unsetting lemmas on retokenized tokens, set the default
lemmas to:
* merge: concatenate any existing lemmas with `SPACY` preserved
* split: use the new `ORTH` values if lemmas were previously set,
otherwise leave unset
* multi-label textcat component
* formatting
* fix comment
* cleanup
* fix from #6481
* random edit to push the tests
* add explicit error when textcat is called with multi-label gold data
* fix error nr
* small fix
* Fix memory issues in Language.evaluate
Reset annotation in predicted docs before evaluating and store all data
in `examples`.
* Minor refactor to docs generator init
* Fix generator expression
* Fix final generator check
* Refactor pipeline loop
* Handle examples generator in Language.evaluate
* Add test with generator
* Use make_doc
* Add Amharic to space
* clean up
* Add some PRON_LEMMA
* add Tigrinya support
* remove text_noun_chunks
* Tigrinya Support
* added some more details for ti
* fix unit test
* add amharic char range
* changes from review
* amharic and tigrinya share same unicode block
* get rid of _amharic/_tigrinya in char_classes
Co-authored-by: Josiah Solomon <jsolomon@meteorcomm.com>
Fix lookup of empty morph in the morphology table, which fixes a memory
leak where a new morphology tag was allocated each time the empty morph
tag was added.
* Switch converters to generator functions
To reduce the memory usage when converting large corpora, refactor the
convert methods to be generator functions.
* Update tests
* Get basic beam tests working
* Get basic beam tests working
* Compile _beam_utils
* Remove prints
* Test beam density
* Beam parser seems to train
* Draft beam NER
* Upd beam
* Add hypothesis as dev dependency
* Implement missing is-gold-parse method
* Implement early update
* Fix state hashing
* Fix test
* Fix test
* Default to non-beam in parser constructor
* Improve oracle for beam
* Start refactoring beam
* Update test
* Refactor beam
* Update nn
* Refactor beam and weight by cost
* Update ner beam settings
* Update test
* Add __init__.pxd
* Upd test
* Fix test
* Upd test
* Fix test
* Remove ring buffer history from StateC
* WIP change arc-eager transitions
* Add state tests
* Support ternary sent start values
* Fix arc eager
* Fix NER
* Pass oracle cut size for beam
* Fix ner test
* Fix beam
* Improve StateC.clone
* Improve StateClass.borrow
* Work directly with StateC, not StateClass
* Remove print statements
* Fix state copy
* Improve state class
* Refactor parser oracles
* Fix arc eager oracle
* Fix arc eager oracle
* Use a vector to implement the stack
* Refactor state data structure
* Fix alignment of sent start
* Add get_aligned_sent_starts method
* Add test for ae oracle when bad sentence starts
* Fix sentence segment handling
* Avoid Reduce that inserts illegal sentence
* Update preset SBD test
* Fix test
* Remove prints
* Fix sent starts in Example
* Improve python API of StateClass
* Tweak comments and debug output of arc eager
* Upd test
* Fix state test
* Fix state test
* add test for multi-label textcat reproducibility
* remove positive_label
* fix lengths dtype
* fix comments
* remove comment that we should not have forgotten :-)
Remove the non-working `--use-chars` option from the train CLI. The
implementation of the option across component types and the CLI settings
could be fixed, but the `CharacterEmbed` model does not work on GPU in
v2 so it's better to remove it.
* define new architectures for the pretraining objective
* add loss function as attr of the omdel
* cleanup
* cleanup
* shorten name
* fix typo
* remove unused error
Preserve `token.spacy` corresponding to the span end token in the
original doc rather than adjusting for the current offset.
* If not modifying in place, this checks in the original document
(`doc.c` rather than `tokens`).
* If modifying in place, the document has not been modified past the
current span start position so the value at the current span end
position is valid.
* When checking for token alignments, check not only that the tokens are
identical but that the character positions are both at the start of a
token.
It's possible for the tokens to be identical even though the two
tokens aren't aligned one-to-one in a case like `["a'", "''"]` vs.
`["a", "''", "'"]`, where the middle tokens are identical but should not
be aligned on the token level at character position 2 since it's the
start of one token but the middle of another.
* Use the lowercased version of the token texts to create the
character-to-token alignment because lowercasing can change the string
length (e.g., for `İ`, see the not-a-bug bug report:
https://bugs.python.org/issue34723)
* Only set NORM on Token in retokenizer
Instead of setting `NORM` on both the token and lexeme, set `NORM` only
on the token.
The retokenizer tries to set all possible attributes with
`Token/Lexeme.set_struct_attr` so that it doesn't have to enumerate
which attributes are available for each. `NORM` is the only attribute
that's stored on both and for most cases it doesn't make sense to set
the global norms based on a individual retokenization. For lexeme-only
attributes like `IS_STOP` there's no way to avoid the global side
effects, but I think that `NORM` would be better only on the token.
* Fix test
Fix bug where `Morphologizer.get_loss` treated misaligned annotation as
`EMPTY_MORPH` rather than ignoring it. Remove unneeded default `EMPTY_MORPH`
mappings.
For the `DependencyMatcher`:
* Fix on_match callback so that it is called once per matched pattern
* Fix results so that patterns with empty match lists are not returned
* Replace pytokenizations with internal alignment
Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.
* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`
* Refactor trailing whitespace handling
* Remove unnecessary exception for empty docs
Allow a non-empty whitespace-only doc to be aligned with an empty doc
* Remove empty docs exceptions completely
* Handle missing reference values in scorer
Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.
Attributes without unset states:
* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation
Additional changes:
* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`
* Fix import
* Update return types
Modify the internal pattern representation in `Matcher` patterns to
identify the final ID state using a unique quantifier rather than a
combination of other attributes.
It was insufficient to identify the final ID node based on an
uninitialized `quantifier` (coincidentally being the same as the `ZERO`)
with `nr_attr` as 0. (In addition, it was potentially bug-prone that
`nr_attr` was set to 0 even though attrs were allocated.)
In the case of `{"OP": "!"}` (a valid, if pointless, pattern), `nr_attr`
is 0 and the quantifier is ZERO, so the previous methods for
incrementing to the ID node at the end of the pattern weren't able to
distinguish the final ID node from the `{"OP": "!"}` pattern.
* added single and paired orth variants
* added token match
* added long text tokenization test
* inverted init
* normalized lemmas to lowercase
* more abbrevs
* tests for ordinals and abbrevs
* separated period abbvrevs to another list
* fiex typo
* added ordinal and abbrev tests
* added number tests for dates
* minor refinement
* added inflected abbrevs regex
* added percentage and inflection
* cosmetics
* added token match
* added url inflection tests
* excluded url tokens from custom pattern
* removed url match import
* Add `cuda110` to setup.cfg and quickstart dropdown
* Switch to `pip` for pip-only packages in conda quickstart instructions
* Update zh pkuseg install message with version range and conda
* Remove `zh` from `extras_require` because the default doesn't require
additional packages
* small fix in example imports
* throw error when train_corpus or dev_corpus is not a string
* small fix in custom logger example
* limit macro_auc to labels with 2 annotations
* fix typo
* also create parents of output_dir if need be
* update documentation of textcat scores
* refactor TextCatEnsemble
* fix tests for new AUC definition
* bump to 3.0.0a42
* update docs
* rename to spacy.TextCatEnsemble.v2
* spacy.TextCatEnsemble.v1 in legacy
* cleanup
* small fix
* update to 3.0.0rc2
* fix import that got lost in merge
* cursed IDE
* fix two typos
* Include Macedonian language
* Fix indentation at char_classes.py
* Fix indentation at char_classes.py
* Add Macedonian tests, update lex_attrs and char_classes
* Import unicode literals for python 2
* Regression test for issue 6207
* Fix issue 6207
* Sign contributor agreement
* Minor adjustments to test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* added tr_vocab to config
* basic test
* added syntax iterator to Turkish lang class
* first version for Turkish syntax iter, without flat
* added simple tests with nmod, amod, det
* more tests to amod and nmod
* separated noun chunks and parser test
* rearrangement after nchunk parser separation
* added recursive NPs
* tests with complicated recursive NPs
* tests with conjed NPs
* additional tests for conj NP
* small modification for shaving off conj from NP
* added tests with flat
* more tests with flat
* added examples with flats conjed
* added inner func for flat trick
* corrected parse
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* rename Pipe to TrainablePipe
* split functionality between Pipe and TrainablePipe
* remove unnecessary methods from certain components
* cleanup
* hasattr(component, "pipe") should be sufficient again
* remove serialization and vocab/cfg from Pipe
* unify _ensure_examples and validate_examples
* small fixes
* hasattr checks for self.cfg and self.vocab
* make is_resizable and is_trainable properties
* serialize strings.json instead of vocab
* fix KB IO + tests
* fix typos
* more typos
* _added_strings as a set
* few more tests specifically for _added_strings field
* bump to 3.0.0a36
