Commit Graph

7177 Commits

Author SHA1 Message Date
svlandeg
36a94c409a failing test to reproduce overlapping spans problem 2020-05-20 23:06:03 +02:00
adrianeboyd
49ef06d793
Add option for base model in init-model CLI (#5467)
Intended for languages like Chinese with a custom tokenizer.
2020-05-20 18:49:11 +02:00
Adriane Boyd
4b229bfc22 Improve handling of NER in CoNLL-U MISC 2020-05-20 18:48:51 +02:00
Matthew Honnibal
609c0ba557
Fix accidentally quadratic runtime in Example.split_sents (#5464)
* Tidy up train-from-config a bit

* Fix accidentally quadratic perf in TokenAnnotation.brackets

When we're reading in the gold data, we had a nested loop where
we looped over the brackets for each token, looking for brackets
that start on that word. This is accidentally quadratic, because
we have one bracket per word (for the POS tags). So we had
an O(N**2) behaviour here that ended up being pretty slow.

To solve this I'm indexing the brackets by their starting word
on the TokenAnnotations object, and having a property to provide
the previous view.

* Fixes
2020-05-20 18:48:18 +02:00
Adriane Boyd
daaa7bf451 Add option to omit extra lexeme tables in CLI 2020-05-20 15:51:44 +02:00
Adriane Boyd
8cba0e41d8 Return lowercase form as default except for PROPN 2020-05-20 15:35:08 +02:00
adrianeboyd
9393253b66
Remove peeking from Parser.begin_training (#5456)
Inspect all instances in `Parser.begin_training` rather than only the
first 1000.
2020-05-20 15:18:06 +02:00
Matthw Honnibal
fda7355508 Fix train-from-config 2020-05-20 12:30:21 +02:00
Matthw Honnibal
24efd54a42 Merge from develop 2020-05-20 12:27:31 +02:00
Sofie Van Landeghem
7f5715a081
Various fixes to NEL functionality, Example class etc (#5460)
* setting KB in the EL constructor, similar to how the model is passed on

* removing wikipedia example files - moved to projects

* throw an error when nlp.update is called with 2 positional arguments

* rewriting the config logic in create pipe to accomodate for other objects (e.g. KB) in the config

* update config files with new parameters

* avoid training pipeline components that don't have a model (like sentencizer)

* various small fixes + UX improvements

* small fixes

* set thinc to 8.0.0a9 everywhere

* remove outdated comment
2020-05-20 11:41:12 +02:00
Adriane Boyd
4fa9670537 Extend lemmatizer rules for all UPOS tags 2020-05-20 10:15:43 +02:00
Matthew Honnibal
664a3603b0 Set version to v3.0.0.dev8 2020-05-19 17:15:39 +02:00
adrianeboyd
40e65d6f63
Fix most_similar for vectors with unused rows (#5348)
* Fix most_similar for vectors with unused rows

Address issues related to the unused rows in the vector table and
`most_similar`:

* Update `most_similar()` to search only through rows that are in use
according to `key2row`.

* Raise an error when `most_similar(n=n)` is larger than the number of
vectors in the table.

* Set and restore `_unset` correctly when vectors are added or
deserialized so that new vectors are added in the correct row.

* Set data and keys to the same length in `Vocab.prune_vectors()` to
avoid spurious entries in `key2row`.

* Fix regression test using `most_similar`

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 16:41:26 +02:00
Sofie Van Landeghem
f00de445dd
default models defined in component decorator (#5452)
* move defaults to pipeline and use in component decorator

* black formatting

* relative import
2020-05-19 16:20:03 +02:00
adrianeboyd
70da1fd2d6
Add warning for misaligned character offset spans (#5007)
* Add warning for misaligned character offset spans

* Resolve conflict

* Filter warnings in example scripts

Filter warnings in example scripts to show warnings once, in particular
warnings about misaligned entities.

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-19 16:01:18 +02:00
adrianeboyd
0061992d95
Update Polish tokenizer for UD_Polish-PDB (#5432)
Update Polish tokenizer for UD_Polish-PDB, which is a relatively major
change from the existing tokenizer. Unused exceptions files and
conflicting test cases removed.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:55 +02:00
adrianeboyd
a5cd203284
Reduce stored lexemes data, move feats to lookups (#5238)
* Reduce stored lexemes data, move feats to lookups

* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
  * Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
  * Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
    lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
  * Remove `SerializedLexemeC`
  * Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
  * Always create `Vocab.lookups` table `lexeme_norm` for
    normalization exceptions
  * Load base exceptions from `lang.norm_exceptions`, but load
    language-specific exceptions from lookups
  * Set `lex_attr_getter[NORM]` including new lookups table in
    `BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
  existing normalizations with the new normalizations (as a replacement
  for the previous step that replaced all lexemes data with the
  deserialized data)

* Skip English normalization test

Skip English normalization test because the data is now in
`spacy-lookups-data`.

* Remove norm exceptions

Moved to spacy-lookups-data.

* Move norm exceptions test to spacy-lookups-data

* Load extra lookups from spacy-lookups-data lazily

Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.

* Skip creating lexeme cache on load

To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.

* Identify numeric values in Lexeme.set_attrs()

With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.

* Skip lexeme cache init in from_bytes

* Unskip and update lookups tests for python3.6+

* Update vocab pickle to include lookups_extra

* Update vocab serialization tests

Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".

* Re-skip lookups test because of python3.5

* Skip PROB/float values in Lexeme.set_attrs

* Convert is_oov from lexeme flag to lex in vectors

Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-19 15:59:14 +02:00
Sofie Van Landeghem
0d94737857
Feature toggle_pipes (#5378)
* make disable_pipes deprecated in favour of the new toggle_pipes

* rewrite disable_pipes statements

* update documentation

* remove bin/wiki_entity_linking folder

* one more fix

* remove deprecated link to documentation

* few more doc fixes

* add note about name change to the docs

* restore original disable_pipes

* small fixes

* fix typo

* fix error number to W096

* rename to select_pipes

* also make changes to the documentation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-05-18 22:27:10 +02:00
Matthew Honnibal
333b1a308b
Adapt parser and NER for transformers (#5449)
* Draft layer for BILUO actions

* Fixes to biluo layer

* WIP on BILUO layer

* Add tests for BILUO layer

* Format

* Fix transitions

* Update test

* Link in the simple_ner

* Update BILUO tagger

* Update __init__

* Import simple_ner

* Update test

* Import

* Add files

* Add config

* Fix label passing for BILUO and tagger

* Fix label handling for simple_ner component

* Update simple NER test

* Update config

* Hack train script

* Update BILUO layer

* Fix SimpleNER component

* Update train_from_config

* Add biluo_to_iob helper

* Add IOB layer

* Add IOBTagger model

* Update biluo layer

* Update SimpleNER tagger

* Update BILUO

* Read random seed in train-from-config

* Update use of normal_init

* Fix normalization of gradient in SimpleNER

* Update IOBTagger

* Remove print

* Tweak masking in BILUO

* Add dropout in SimpleNER

* Update thinc

* Tidy up simple_ner

* Fix biluo model

* Unhack train-from-config

* Update setup.cfg and requirements

* Add tb_framework.py for parser model

* Try to avoid memory leak in BILUO

* Move ParserModel into spacy.ml, avoid need for subclass.

* Use updated parser model

* Remove incorrect call to model.initializre in PrecomputableAffine

* Update parser model

* Avoid divide by zero in tagger

* Add extra dropout layer in tagger

* Refine minibatch_by_words function to avoid oom

* Fix parser model after refactor

* Try to avoid div-by-zero in SimpleNER

* Fix infinite loop in minibatch_by_words

* Use SequenceCategoricalCrossentropy in Tagger

* Fix parser model when hidden layer

* Remove extra dropout from tagger

* Add extra nan check in tagger

* Fix thinc version

* Update tests and imports

* Fix test

* Update test

* Update tests

* Fix tests

* Fix test

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-18 22:23:33 +02:00
Ines Montani
a41e28ceba
Merge pull request #5436 from ilivans/fix_errors_with_codes 2020-05-18 10:45:56 +02:00
Ilkyu Ju
72a25c9cef
Very minor issues in Korean example sentences (#5446)
* Add contributor agreement

* Improve ko translation of example sentences

I fixed unnatural translations and word spacing errors.

* Update osori.md
2020-05-17 13:43:34 +02:00
svlandeg
6fb6a8518c bump to 3.0.0.dev7 and thinc to 8.0.0a8 2020-05-15 13:25:54 +02:00
svlandeg
047f3d7d94 remove ops argument for Adam 2020-05-15 13:25:00 +02:00
svlandeg
e0fda2bd81 throw warning when model_cfg is None 2020-05-15 11:02:10 +02:00
adrianeboyd
908dea3939
Skip duplicate lexeme rank setting (#5401)
Skip duplicate lexeme rank setting within
`_fix_pretrained_vectors_name()`.
2020-05-14 18:26:12 +02:00
adrianeboyd
f49e2810e6
Add Polish lemmatizer (#5413)
* Add Polish lemmatizer

Contributed by @ryszardtuora

* Add missing import
2020-05-14 18:23:19 +02:00
adrianeboyd
e63880e081
Use Token.sent_start for Span.sent (#5439)
Use `Token.sent_start` for sentence boundaries in `Span.sent` so that
`Doc.sents` and `Span.sent` return the same sentence boundaries.
2020-05-14 18:22:51 +02:00
adrianeboyd
780b869345
Fix syntax iterators for Persian (#5437) 2020-05-14 16:51:03 +02:00
Ilia Ivanov
712d9d4820 fixup! Fix ErrorsWithCodes().__class__ return value 2020-05-14 15:45:58 +02:00
Ilia Ivanov
a987e9e45d Fix ErrorsWithCodes().__class__ return value 2020-05-14 14:14:15 +02:00
Vishnu Priya VR
9ce059dd06
Limiting noun_chunks for specific languages (#5396)
* Limiting noun_chunks for specific langauges

* Limiting noun_chunks for specific languages

Contributor Agreement

* Addressing review comments

* Removed unused fixtures and imports

* Add fa_tokenizer in test suite

* Use fa_tokenizer in test

* Undo extraneous reformatting

Co-authored-by: adrianeboyd <adrianeboyd@gmail.com>
2020-05-14 12:58:06 +02:00
Sofie Van Landeghem
b04738903e
prevent None in gold fields (#5425)
* set gold fields to empty list instead of keeping them as None

* add unit test
2020-05-13 22:08:50 +02:00
adrianeboyd
113e7981d0
Check that row is within bounds when adding vector (#5430)
Check that row is within bounds for the vector data array when adding a
vector.

Don't add vectors with rank OOV_RANK in `init-model` (change is due to
shift from OOV as 0 to OOV as OOV_RANK).
2020-05-13 22:08:28 +02:00
adrianeboyd
07639dd6ac
Remove TAG from da/sv tokenizer exceptions (#5428)
Remove `TAG` value from Danish and Swedish tokenizer exceptions because
it may not be included in a tag map (and these settings are problematic
as tokenizer exceptions anyway).
2020-05-13 10:25:54 +02:00
adrianeboyd
24e7108f80
Modify array type to accommodate OOV_RANK (#5429)
Modify indices array type in `Vocab.prune_vectors` to accommodate
OOV_RANK index as max(uint64).
2020-05-13 10:25:05 +02:00
svlandeg
102c8c7e2f fix fan_in renaming 2020-05-12 13:56:10 +02:00
adrianeboyd
440b81bddc
Improve exceptions for 'd (would/had) in English (#5379)
Instead of treating `'d` in contractions like `I'd` as `would` in all
cases in the tokenizer exceptions, leave the tagging and lemmatization
up to later components.
2020-05-08 15:10:57 +02:00
adrianeboyd
c963e269ba
Add method to update / reset pkuseg user dict (#5404) 2020-05-08 11:21:46 +02:00
Samuel Rodríguez Medina
5e55bfa821
Fixed tests for Swedish that were written in Danish. (#5395) 2020-05-05 14:06:27 +02:00
Adriane Boyd
565e0eef73 Add tokenizer option for token match with affixes
To fix the slow tokenizer URL (#4374) and allow `token_match` to take
priority over prefixes and suffixes by default, introduce a new
tokenizer option for a token match pattern that's applied after prefixes
and suffixes but before infixes.
2020-05-05 10:35:33 +02:00
Adriane Boyd
792c8af8cf Merge remote-tracking branch 'upstream/master' into bugfix/revert-token-match 2020-05-05 09:25:57 +02:00
Matthew Honnibal
eb117e2fce Add load_config_from_str helper 2020-05-02 14:09:21 +02:00
adrianeboyd
c045a9c7f6
Fix logic in train CLI timing eval on GPU (#5387)
Run CPU timing in first iteration only
2020-05-01 12:05:33 +02:00
Samuel Rodríguez Medina
148b036e0c
Spanish like num improvement (#5381)
* Add tests for Spanish like_num.

* Add missing numbers in Spanish lexical attributes for like_num.

* Modify Spanish test function name.

* Add contributor agreement.
2020-04-30 11:13:23 +02:00
Samuel Rodríguez Medina
8602daba85
Swedish like_num (#5371)
* Sign contributor agreement.

* Add like_num functionality to Swedish.

* Update spacy/tests/lang/sv/test_lex_attrs.py

Co-Authored-By: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update contributor agreement

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2020-04-29 21:25:22 +02:00
adrianeboyd
74da669326
Fix problems with lower and whitespace in variants (#5361)
* Initialize lower flag explicitly

* Handle whitespace words from GoldParse correctly when creating raw
text with orth variants

* Return the text with original casing if anything goes wrong
2020-04-29 13:01:25 +02:00
adrianeboyd
3f43c73d37
Normalize TokenC.sent_start values for Matcher (#5346)
Normalize TokenC.sent_start values to booleans for the `Matcher`.
2020-04-29 12:57:30 +02:00
adrianeboyd
bdff76dede
Various updates/additions to CLI scripts (#5362)
* `debug-data`: determine coverage of provided vectors

* `evaluate`: support `blank:lg` model to make it possible to just evaluate
tokenization

* `init-model`: add option to truncate vectors to N most frequent vectors
from word2vec file

* `train`:

  * if training on GPU, only run evaluation/timing on CPU in the first
    iteration

  * if training is aborted, exit with a non-0 exit status
2020-04-29 12:56:46 +02:00
Sofie Van Landeghem
cfdaf99b80
Fix passing of component configuration (#5374)
* add kwargs to to_disk methods in docs - otherwise crashes on 'exclude' argument

* add fix and test for Issue 5137
2020-04-29 12:56:17 +02:00
Ines Montani
efec28ce70
Merge pull request #5367 from adrianeboyd/feature/simplify-warnings-v2 2020-04-29 12:55:37 +02:00
Sofie Van Landeghem
f67343295d
Update NEL examples and documentation (#5370)
* simplify creation of KB by skipping dim reduction

* small fixes to train EL example script

* add KB creation and NEL training example scripts to example section

* update descriptions of example scripts in the documentation

* moving wiki_entity_linking folder from bin to projects

* remove test for wiki NEL functionality that is being moved
2020-04-29 12:53:53 +02:00
adrianeboyd
a6e521cd79
Add is_sent_end token property (#5375)
Reconstruction of the original PR #4697 by @MiniLau.

Removes unused `SENT_END` symbol and `IS_SENT_END` from `Matcher` schema
because the Matcher is only going to be able to support `IS_SENT_START`.
2020-04-29 12:53:16 +02:00
Ines Montani
eac47971f1
Merge pull request #5258 from mirfan899/master 2020-04-29 12:51:55 +02:00
adrianeboyd
d5f18f8307
Add missing import 2020-04-28 14:01:29 +02:00
adrianeboyd
ac40a8f7a5
Add missing import 2020-04-28 14:00:11 +02:00
Adriane Boyd
3a045572ed Add missing import 2020-04-28 13:48:37 +02:00
Adriane Boyd
bc39f97e11 Simplify warnings 2020-04-28 13:37:37 +02:00
adrianeboyd
f8ac5b9f56
bugfix in span similarity (#5155) (#5358)
* bugfix in span similarity

* also rewrite doc.pyx for clarity

* formatting

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2020-04-27 16:51:27 +02:00
Sofie Van Landeghem
9203d821ae
Add 2 ini files in tests/lang (#5359) 2020-04-27 13:01:54 +02:00
Punitvara
b2b7e1f37a
This PR adds Gujarati Language class along with (#5355)
* This PR adds Gujarati Language class along with
- stop words

* Add test for gu tokenizer
2020-04-27 11:07:37 +02:00
sabiqueqb
fc91660aa2
Gh 5339 language class for malayalam (#5342)
* Initialize Malayalam Language class

* Add lex_attrs and examples for Malayalam

* Add spaCy Contributor Agreement

* Add test for ml tokenizer
2020-04-27 09:45:08 +02:00
adrianeboyd
84e06f9fb7
Improve GoldParse NER alignment (#5335)
Improve GoldParse NER alignment by including all cases where the start
and end of the NER span can be aligned, regardless of internal
tokenization differences.

To do this, convert BILUO tags to character offsets, check start/end
alignment with `doc.char_span()`, and assign the BILUO tags for the
aligned spans. Alignment for `O/-` tags is handled through the
one-to-one and multi alignments.
2020-04-23 16:58:23 +02:00
adrianeboyd
521f361052
Switch to new gold.align method (#5334)
* Switch from original `_align` to new simpler alignment algorithm from
  #4526

* Remove alignment normalizations beyond whitespace and lowercasing
2020-04-21 19:31:03 +02:00
Matthew Honnibal
b2ef6100af
Only run backprop once when shared tok2vec weights (#5331)
Previously, pipelines with shared tok2vec weights would call the
tok2vec backprop callback multiple times, once for each pipeline
component. This caused errors for PyTorch, and was inefficient.

Instead, accumulate the gradient for all but one component, and just
call the callback once.
2020-04-21 19:30:41 +02:00
adrianeboyd
bf5c13d170
Modify jieba install message (#5328)
Modify jieba install message to instruct the user to use
`ChineseDefaults.use_jieba = False` so that it's possible to load
pkuseg-only models without jieba installed.
2020-04-20 22:06:53 +02:00
Matthew Honnibal
6918d99b6c
Improve GPU usage for train-with-config (#5330)
* Adjust for no ops in Optimizer

* Fix gpu in train-from-config

* Update train-from-config script

* Fix parser

* Fix GPU efficiency of padding backprop
2020-04-20 22:06:28 +02:00
adrianeboyd
f7471abd82
Add pkuseg and serialization support for Chinese (#5308)
* Add pkuseg and serialization support for Chinese

Add support for pkuseg alongside jieba

* Specify model through `Language` meta:

  * split on characters (if no word segmentation packages are installed)

```
Chinese(meta={"tokenizer": {"config": {"use_jieba": False, "use_pkuseg": False}}})
```

  * jieba (remains the default tokenizer if installed)

```
Chinese()
Chinese(meta={"tokenizer": {"config": {"use_jieba": True}}}) # explicit
```

  * pkuseg

```
Chinese(meta={"tokenizer": {"config": {"pkuseg_model": "default", "use_jieba": False, "use_pkuseg": True}}})
```

* The new tokenizer setting `require_pkuseg` is used to override
`use_jieba` default, which is intended for models that provide a pkuseg
model:

```
nlp_pkuseg = Chinese(meta={"tokenizer": {"config": {"pkuseg_model": "default", "require_pkuseg": True}}})
nlp = Chinese() # has `use_jieba` as `True` by default
nlp.from_bytes(nlp_pkuseg.to_bytes()) # `require_pkuseg` overrides `use_jieba` when calling the tokenizer
```

Add support for serialization of tokenizer settings and pkuseg model, if
loaded

* Add sorting for `Language.to_bytes()` serialization of `Language.meta`
so that the (emptied, but still present) tokenizer metadata is in a
consistent position in the serialized data

Extend tests to cover all three tokenizer configurations and
serialization

* Fix from_disk and tests without jieba or pkuseg

* Load cfg first and only show error if `use_pkuseg`
* Fix blank/default initialization in serialization tests

* Explicitly initialize jieba's cache on init

* Add serialization for pkuseg pre/postprocessors

* Reformat pkuseg install message
2020-04-18 17:01:53 +02:00
Jakob Jul Elben
663333c3b2
Fixes #5413 (#5315)
* Fix 5314

* Add contributor

* Resolve requested changes

Co-authored-by: Jakob Jul Elben <jakob@datamaga.com>
2020-04-16 13:29:02 +02:00
Leander Fiedler
a3401b1194 issue5230 changed reference to function to anonymous function 2020-04-15 21:52:52 +02:00
Leander Fiedler
cef0c909b9 issue5230 changed reference to function to anonymous function 2020-04-15 19:28:33 +02:00
Paolo Arduin
1ca32d8f9c
Matcher support for Span as well as Doc (#5113)
* Matcher support for Span, as well as Doc #5056

* Removes an import unused

* Signed contributors agreement

* Code optimization and better test

* Add error message for bad Matcher call argument

* Fix merging
2020-04-15 13:51:33 +02:00
adrianeboyd
98c59027ed
Use max(uint64) for OOV lexeme rank (#5303)
* Use max(uint64) for OOV lexeme rank

* Add test for default OOV rank

* Revert back to thinc==7.4.0

Requiring the updated version of thinc was unnecessary.

* Define OOV_RANK in one place

Define OOV_RANK in one place in `util`.

* Fix formatting [ci skip]

* Switch to external definitions of max(uint64)

Switch to external defintions of max(uint64) and confirm that they are
equal.
2020-04-15 13:49:47 +02:00
adrianeboyd
3d2c308906
Add Doc init from list of words and text (#5251)
* Add Doc init from list of words and text

Add an option to initialize a `Doc` from a text and list of words where
the words may or may not include all whitespace tokens. If the text and
words are mismatched, raise an error.

* Fix error code

* Remove all whitespace before aligning words/text

* Move words/text init to util function

* Update error message

* Rename to get_words_and_spaces

* Fix formatting
2020-04-14 19:15:52 +02:00
Paolo Arduin
8ce408d2e1
Comparison predicate handling for != (#5282)
* Fix #5281

* Optim test
2020-04-14 19:14:15 +02:00
Leander Fiedler
6700006830 issue5230 attempted fix of pytest segfault for python3.5 2020-04-12 09:34:54 +02:00
Leander Fiedler
d60e2d3ebf issue5230 added unit test for dumping and loading knowledgebase 2020-04-12 09:08:41 +02:00
Leander Fiedler
d2bb649227 issue5230 filter warnings in addition to filterwarnings to prevent deprecation warnings in python35(win) setup to pop up 2020-04-10 23:21:13 +02:00
Leander Fiedler
ca2a7a44db issue5230 store string values of warnings to remotely debug failing python35(win) setup 2020-04-10 22:26:55 +02:00
Leander Fiedler
88ca40a15d issue5230 raise warnings as errors to remotely debug failing python35(win) setup 2020-04-10 21:45:53 +02:00
Leander Fiedler
a7bdfe42e1 issue5230 added print statement to warnings filter to remotely debug failing python35(win) setup 2020-04-10 21:14:33 +02:00
Leander Fiedler
8c1d0d628f issue5230 writer now checks instance of loc parameter before trying to operate on it 2020-04-10 20:35:52 +02:00
Umar Butler
8952effcc4
Fixed Typo in Warning (#5284)
* Fixed typo in cli warning

Fixed a typo in the warning for the provision of exactly two labels, which have not been designated as binary, to textcat.

* Create and signed contributor form
2020-04-09 15:46:15 +02:00
Sofie Van Landeghem
42364dcd9f
Remove "pala" tokenizer exception for Spanish (#5265) 2020-04-09 10:21:20 +02:00
adrianeboyd
cf579a398d
Add __init__.py to eu and hy tests (#5278) 2020-04-08 20:03:06 +02:00
adrianeboyd
ae4af52ce7
Add ideographic stops to sentencizer (#5263)
Add ideographic half- and fullwidth full stops to default sentencizer
punctuation.
2020-04-08 12:58:39 +02:00
adrianeboyd
fa760010a5
Set rank for new vector in Vocab.set_vector (#5266)
Set `Lexeme.rank` for vectors added with `Vocab.set_vector` so that the
lexeme `ID` accessed by a model points the right row for the new vector.
2020-04-07 12:04:51 +02:00
lfiedler
e1e25c7e30 issue5230: added unittest test case for completion 2020-04-06 21:36:02 +02:00
Leander Fiedler
cde96f6c64 issue5230: optimized unit test a bit 2020-04-06 20:51:12 +02:00
Leander Fiedler
71cc903d65 issue5230: replaced open statements on path objects so that serialization still works an files are closed 2020-04-06 20:30:41 +02:00
Leander Fiedler
273ed452bb issue5230: added unicode declaration at top of the file 2020-04-06 19:22:32 +02:00
Leander Fiedler
1cd975d4a5 issue5230: fixed resource warnings in language 2020-04-06 18:54:32 +02:00
Leander Fiedler
493c77462a issue5230: test cases
covering known sources of resource warnings
2020-04-06 18:46:51 +02:00
adrianeboyd
c981aa6684
Use inline flags in token_match patterns (#5257)
* Use inline flags in token_match patterns

Use inline flags in `token_match` patterns so that serializing does not
lose the flag information.

* Modify inline flag

* Modify inline flag
2020-04-06 13:19:04 +02:00
adrianeboyd
e8be15e9b7
Improve tokenization for UD Spanish AnCora (#5253) 2020-04-06 13:18:23 +02:00
adrianeboyd
f4ef64a526
Improve tokenization for UD Dutch corpora (#5259)
* Improve tokenization for UD Dutch corpora

Improve tokenization for UD Dutch Alpino and LassySmall.

* Format Dutch tokenizer exceptions
2020-04-06 13:18:07 +02:00
Muhammad Irfan
406d5748b3 add missing Urdu tags 2020-04-05 20:55:38 +05:00
Sofie Van Landeghem
b2e93be867
Optimizer defaults (#5244)
* set optimizer defaults to mimic thinc 7 + bump to dev6

* larger error range for senter overfitting test
2020-04-03 13:02:46 +02:00
YohannesDatasci
beef184e53
Armenian language support (#5246)
* add Armenian language and test cases

* agreement submission
2020-04-03 13:02:18 +02:00
Michael Leichtfried
2b14997b68
Remove duplicated branch in if/else-if statement (#5234)
* Remove duplicated branch in if-elif-statement

* Add contributor agreement for leicmi
2020-04-02 14:47:42 +02:00
adrianeboyd
b71a11ff6d
Update morphologizer (#5108)
* Add pos and morph scoring to Scorer

Add pos, morph, and morph_per_type to `Scorer`. Report pos and morph
accuracy in `spacy evaluate`.

* Update morphologizer for v3

* switch to tagger-based morphologizer
* use `spacy.HashCharEmbedCNN` for morphologizer defaults
* add `Doc.is_morphed` flag

* Add morphologizer to train CLI

* Add basic morphologizer pipeline tests

* Add simple morphologizer training example

* Remove subword_features from CharEmbed models

Remove `subword_features` argument from `spacy.HashCharEmbedCNN.v1` and
`spacy.HashCharEmbedBiLSTM.v1` since in these cases `subword_features`
is always `False`.

* Rename setting in morphologizer example

Use `with_pos_tags` instead of `without_pos_tags`.

* Fix kwargs for spacy.HashCharEmbedBiLSTM.v1

* Remove defaults for spacy.HashCharEmbedBiLSTM.v1

Remove default `nM/nC` for `spacy.HashCharEmbedBiLSTM.v1`.

* Set random seed for textcat overfitting test
2020-04-02 14:46:32 +02:00
adrianeboyd
d107afcffb
Raise error for inplace resize with new vector dim (#5228)
Raise an error if there is an attempt to resize the vectors in place with
a different vector dimension.
2020-04-02 10:43:13 +02:00
Jacob Lauritzen
0b76212831
Extend and fix Danish examples (#5227)
* Extend and fix Danish examples

This PR fixes two examples, adds additional examples translated from the english version, and adds punctuation.

The two changed examples are:
* "fortov" changed to "fortovet", which is more [used](https://www.google.com/search?client=firefox-b-d&sxsrf=ALeKk0143gEuPe4IbIUpzBBt-oU10OMVqA%3A1585549036477&ei=7I6BXuvJHMGOrwSqi46oCQ&q=l%C3%B8behjul+p%C3%A5+fortov&oq=l%C3%B8behjul+p%C3%A5+fortov&gs_lcp=CgZwc3ktYWIQAzIECAAQRzIECAAQRzIECAAQRzIECAAQRzIECAAQRzIECAAQRzIECAAQRzIECAAQR1DT8xZY0_MWYK_0FmgAcAZ4AIABAIgBAJIBAJgBAKABAaoBB2d3cy13aXo&sclient=psy-ab&ved=0ahUKEwjr7964xsHoAhVBx4sKHaqFA5UQ4dUDCAo&uact=5) and more natural. The Swedish and Norwegian examples also use this version of the word.
* "stor by" changed to "storby". In Danish we have a specific noun to describe a large, metropolitan city which is different from just describing a city as "large". In this sentence it would be much more natural to describe London as a "storby". Google even correct as search for "London stor by" to "London storby".

* Sign contrib agreement
2020-04-02 10:42:35 +02:00
Sofie Van Landeghem
ab59f3124e
fix NEL overfitting test for GPU (#5236) 2020-04-02 10:32:52 +02:00
Sofie Van Landeghem
311133e579
Train textcat with config (#5143)
* bring back default build_text_classifier method

* remove _set_dims_ hack in favor of proper dim inference

* add tok2vec initialize to unit test

* small fixes

* add unit test for various textcat config settings

* logistic output layer does not have nO

* fix window_size setting

* proper fix

* fix W initialization

* Update textcat training example

* Use ml_datasets
* Convert training data to `Example` format
* Use `n_texts` to set proportionate dev size

* fix _init renaming on latest thinc

* avoid setting a non-existing dim

* update to thinc==8.0.0a2

* add BOW and CNN defaults for easy testing

* various experiments with train_textcat script, fix softmax activation in textcat bow

* allow textcat train script to work on other datasets as well

* have dataset as a parameter

* train textcat from config, with example config

* add config for training textcat

* formatting

* fix exclusive_classes

* fixing BOW for GPU

* bump thinc to 8.0.0a3 (not published yet so CI will fail)

* add in link_vectors_to_models which got deleted

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-03-29 19:40:36 +02:00
adrianeboyd
ce0e538068
Check whether doc is instantiated in Example.get_gold_parses() (#5167)
* Check whether doc is instantiated

When creating docs to pair with gold parses, modify test to check
whether a doc is unset rather than whether it contains tokens.

* Restore test of evaluate on an empty doc

* Set a minimal gold.orig for the scorer

Without a minimal gold.orig the scorer can't evaluate empty docs. This
is the v3 equivalent of #4925.
2020-03-29 13:57:00 +02:00
Sofie Van Landeghem
d6d95674c1
bugfix in span similarity (#5155)
* bugfix in span similarity

* also rewrite doc.pyx for clarity

* formatting
2020-03-29 13:56:07 +02:00
Nikhil Saldanha
4f27a24f5b
Add kannada examples (#5162)
* Add example sentences for Kannada

* sign contributor agreement
2020-03-29 13:54:42 +02:00
adrianeboyd
d47b810ba4
Fix exclusive_classes in textcat ensemble (#5166)
Pass the exclusive_classes setting to the bow model within the ensemble
textcat model.
2020-03-29 13:52:34 +02:00
adrianeboyd
963bd890c1
Modify Vector.resize to work with cupy and improve resizing (#5216)
* Modify Vector.resize to work with cupy

Modify `Vectors.resize` to work with cupy. Modify behavior when resizing
to a different vector dimension so that individual vectors are truncated
or extended with zeros instead of having the original values filled into
the new shape without regard for the original axes.

* Update spacy/tests/vocab_vectors/test_vectors.py

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-03-29 13:51:20 +02:00
Sofie Van Landeghem
1f9852abc3
Fix parser @ GPU (#5210)
* ensure self.bias is numpy array in parser model

* 2 more little bug fixes for parser on GPU

* removing testing GPU statement

* remove commented code
2020-03-28 23:09:35 +01:00
Sofie Van Landeghem
9b412516e7
Fixing pickling of the parser (#5218)
* fix __reduce__ for pickling parser

* setting the move object as 'state' during pickling

* unskip test_issue4725 - works again
2020-03-27 19:35:26 +01:00
Ines Montani
92b9b631ef xfail -> skip 2020-03-27 10:51:32 +01:00
Ines Montani
ee4bb0e3b6 Fix import 2020-03-26 21:44:18 +01:00
Ines Montani
4fe2299586 xfail hanging test 2020-03-26 20:58:13 +01:00
Ines Montani
f12a46472c Remove unicode declarations 2020-03-26 15:18:32 +01:00
Ines Montani
7453df79d1 Fix argument 2020-03-26 14:09:02 +01:00
Ines Montani
e7341db5dc Add sent_start to pattern schema 2020-03-26 14:05:40 +01:00
Ines Montani
70ee4ef4fd Fix small errors 2020-03-26 13:47:31 +01:00
Ines Montani
46568f40a7 Merge branch 'master' into tmp/sync 2020-03-26 13:38:14 +01:00
adrianeboyd
8d3563f1c4
Minor bugfixes for train CLI (#5186)
* Omit per_type scores from model-best calculations

The addition of per_type scores to the included metrics (#4911) causes
errors when they're compared while determining the best model, so omit
them for this `max()` comparison.

* Add default speed data for interrupted train CLI

Add better speed meta defaults so that an interrupted iteration still
produces a best model.

Co-authored-by: Ines Montani <ines@ines.io>
2020-03-26 10:46:50 +01:00
adrianeboyd
a04f802099
Fix GoldParse init when token count differs (#5191)
Fix the `GoldParse` initialization when the number of tokens has changed
(due to merging subtokens with the parser).
2020-03-26 10:46:23 +01:00
adrianeboyd
d88a377bed
Remove Vectors.from_glove (#5209) 2020-03-26 10:45:47 +01:00
Ines Montani
828acffc12 Tidy up and auto-format 2020-03-25 12:28:12 +01:00
adrianeboyd
86c43e55fa
Improve Lithuanian tokenization (#5205)
* Improve Lithuanian tokenization

Modify Lithuanian tokenization to improve performance for
UD_Lithuanian-ALKSNIS.

* Update Lithuanian tokenizer tests
2020-03-25 11:28:12 +01:00
adrianeboyd
1a944e5976
Improve Italian tokenization (#5204)
Improve Italian tokenization for UD_Italian-ISDT.
2020-03-25 11:28:02 +01:00
adrianeboyd
923a453449
Modifications/updates to Portuguese tokenization (#5203)
Modifications to Portuguese tokenization for UD_Portuguese-Bosque.
Instead of splitting contactions as exceptions, they are kept as merged
tokens.
2020-03-25 11:27:53 +01:00
adrianeboyd
4117a5c705
Improve French tokenization (#5202)
Improve French tokenization for UD_French-Sequoia.
2020-03-25 11:27:42 +01:00
Ines Montani
a3d09ffe61
Merge pull request #5201 from adrianeboyd/feature/ud-tokenization-nb-v2
Improved tokenization for UD_Norwegian-Bokmaal
2020-03-25 11:27:31 +01:00
Sofie Van Landeghem
218e1706ac
Bugfix linking vectors (#5196)
* restore call to _load_vectors

* bump to thinc 8.0.0a3

* bump to 3.0.0.dev4
2020-03-25 10:20:11 +01:00
Adriane Boyd
09d442f5ad Merge remote-tracking branch 'upstream/master' into feature/ud-tokenization-da 2020-03-25 09:41:52 +01:00
Adriane Boyd
cba2d1d972 Disable failing abbreviation test
UD_Danish-DDT has (as far as I can tell) hallucinated periods after
abbreviations, so the changes are an artifact of the corpus and not due
to anything meaningful about Danish tokenization.
2020-03-25 09:39:26 +01:00
Adriane Boyd
79737adb90 Improved tokenization for UD_Norwegian-Bokmaal 2020-03-25 08:54:02 +01:00
Ines Montani
5f2afa0479
Merge pull request #5185 from adrianeboyd/bugfix/de-punctuation-style
Improve German tokenizer settings style
2020-03-24 16:38:32 +01:00
Adriane Boyd
2897a73559 Improve German tokenizer settings style 2020-03-23 19:23:47 +01:00
Baciccin
3b53617a69 Add Ligurian language 2020-03-19 21:37:01 -07:00
Ines Montani
558032017e
Merge pull request #5157 from svlandeg/bugfix/language
remove unnecessary itertools call
2020-03-16 15:04:25 +01:00
Ines Montani
c68f20b398
Merge pull request #5146 from adrianeboyd/bugfix/assert-docs-equal-sents
Fix sents comparison in test util
2020-03-16 14:59:32 +01:00
svlandeg
fba219f737 remove unnecessary itertools call 2020-03-16 08:31:36 +01:00
svlandeg
59000ee21d fix serialization of empty doc + unit test 2020-03-13 16:07:56 +01:00
Adriane Boyd
423849f94a Fix sents comparison in test util
Due to changes to `Span` (#5005), spans from different documents are now
never equal. Check `Token.is_sent_start` values instead.
2020-03-13 09:25:23 +01:00
Matthew Honnibal
26a90f011b Set version to v2.2.4 2020-03-12 11:30:41 +01:00
svlandeg
c4d030dbf6 remove accidental commit 2020-03-09 18:10:54 +01:00
svlandeg
1724a4f75b additional information if doc is empty 2020-03-09 18:08:18 +01:00
Adriane Boyd
1139247532 Revert changes to token_match priority from #4374
* Revert changes to priority of `token_match` so that it has priority
over all other tokenizer patterns

* Add lookahead and potentially slow lookbehind back to the default URL
pattern

* Expand character classes in URL pattern to improve matching around
lookaheads and lookbehinds related to #4882

* Revert changes to Hungarian tokenizer

* Revert (xfail) several URL tests to their status before #4374

* Update `tokenizer.explain()` and docs accordingly
2020-03-09 12:09:41 +01:00
Ines Montani
1d6aec805d Fix formatting and update docs for v2.2.4 2020-03-09 11:17:20 +01:00
Mark Abraham
0345135167
Tokenizer to_disk and from_disk now ensure paths (#5116)
* Tokenizer to_disk and from_disk now ensure strings are converted to paths

Fixes #5115

* Sign contributor agreement
2020-03-08 13:25:56 +01:00
Sofie Van Landeghem
5847be6022
Tok2Vec: extract-embed-encode (#5102)
* avoid changing original config

* fix elif structure, batch with just int crashes otherwise

* tok2vec example with doc2feats, encode and embed architectures

* further clean up MultiHashEmbed

* further generalize Tok2Vec to work with extract-embed-encode parts

* avoid initializing the charembed layer with Docs (for now ?)

* small fixes for bilstm config (still does not run)

* rename to core layer

* move new configs

* walk model to set nI instead of using core ref

* fix senter overfitting test to be more similar to the training data (avoid flakey behaviour)
2020-03-08 13:23:18 +01:00
adrianeboyd
993758c58f
Remove unnecessary iterator in Language.pipe (#5101)
Remove iterator over `raw_texts` with `iterator.tee()` in
`Language.pipe` that is never consumed and consumes memory
unnecessarily.
2020-03-08 13:22:25 +01:00
Sofie Van Landeghem
1a2b8fc264
set vector of merged entity (#5085)
* merge_entities sets the vector in the vocab for the merged token

* add unit test

* import unicode_literals

* move code to _merge function

* only set vector if vocab has non-zero vectors
2020-03-06 14:45:28 +01:00
adrianeboyd
c95ce96c44
Update sentence recognizer (#5109)
* Update sentence recognizer

* rename `sentrec` to `senter`
* use `spacy.HashEmbedCNN.v1` by default
* update to follow `Tagger` modifications
* remove component methods that can be inherited from `Tagger`
* add simple initialization and overfitting pipeline tests

* Update serialization test for senter
2020-03-06 14:45:02 +01:00
Sofie Van Landeghem
6ac9fc0619
Unit test for NEL functionality (#5114)
* empty begin_training for sentencizer

* overfitting unit test for entity linker

* fixed NEL IO by storing the entity_vector_length in the cfg
2020-03-06 14:42:23 +01:00
Ines Montani
b0cfab317f Merge branch 'develop' into refactor/simplify-warnings 2020-03-04 16:38:55 +01:00
Muhammad Irfan
224a7f8e94 examples 2020-03-04 15:49:06 +05:00
Muhammad Irfan
03376c9d9b Basque language added and tested. 2020-03-04 11:58:56 +05:00
adrianeboyd
9be90dbca3
Improve token head verification (#5079)
* Improve token head verification

Improve the verification for valid token heads when heads are set:

* in `Token.head`: heads come from the same document
* in `Doc.from_array()`: head indices are within the bounds of the
document

* Improve error message
2020-03-03 21:44:51 +01:00
adrianeboyd
8c20dae6f7
Fix model-final/model-best meta from train CLI (#5093)
* Fix model-final/model-best meta

* include speed and accuracy from final iteration
* combine with speeds from base model if necessary

* Include token_acc metric for all components
2020-03-03 21:43:25 +01:00
Sofie Van Landeghem
a0998868ff
prevent updating cfg if the Model was already defined (#5078) 2020-03-03 13:58:56 +01:00
Sofie Van Landeghem
d307e9ca58
take care of global vectors in multiprocessing (#5081)
* restore load_nlp.VECTORS in the child process

* add unit test

* fix test

* remove unnecessary import

* add utf8 encoding

* import unicode_literals
2020-03-03 13:58:22 +01:00
adrianeboyd
d078b47c81
Break out of infinite loop as intended (#5077) 2020-03-03 12:29:05 +01:00
adrianeboyd
697bec764d
Normalize IS_SENT_START to SENT_START for Matcher (#5080) 2020-03-03 12:22:39 +01:00
adrianeboyd
2281c4708c
Restore empty tokenizer properties (#5026)
* Restore empty tokenizer properties

* Check for types in tokenizer.from_bytes()

* Add test for setting empty tokenizer rules
2020-03-02 11:55:02 +01:00
Sofie Van Landeghem
c6b12ab02a
Bugfix/get doc (#5049)
* new (broken) unit test

* fixing get_doc method
2020-03-02 11:49:28 +01:00
Ines Montani
648f61d077
Tidy up compiler flags and imports (#5071) 2020-03-02 11:48:10 +01:00
Ines Montani
7efaa76168 Update errors.py 2020-02-28 12:23:31 +01:00
Ines Montani
37691e6d5d Simplify warnings 2020-02-28 12:20:23 +01:00
Ines Montani
5da3ad682a Tidy up and auto-format 2020-02-28 11:57:41 +01:00
adrianeboyd
65d7bab10f
Initialize all values in a2b/b2a in new align (#5063) 2020-02-27 18:43:00 +01:00
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Adriane Boyd
9f740a9891 Add a few more Danish tokenizer exceptions 2020-02-26 14:59:03 +01:00
Ines Montani
1c212215cd
Merge pull request #5064 from adrianeboyd/feature/german-tokenization
Improve German tokenization
2020-02-26 13:41:44 +01:00
Adriane Boyd
d1f703d78d Improve German tokenization
Improve German tokenization with respect to Tiger.
2020-02-26 13:06:52 +01:00
Ines Montani
ed9358420e Merge branch 'master' into pr/5060 2020-02-26 12:51:29 +01:00
adrianeboyd
ff184b7a9c
Add tag_map argument to CLI debug-data and train (#4750) (#5038)
Add an argument for a path to a JSON-formatted tag map, which is used to
update and extend the default language tag map.
2020-02-26 12:10:38 +01:00
svlandeg
18ff97589d update spacy to 2.2.4.dev0 2020-02-26 10:50:05 +01:00
svlandeg
fc6e34c3a1 fix bugs from porting master to develop 2020-02-26 08:44:22 +01:00
Ines Montani
c1a5ece65f Tidy up setup and update requirements tests 2020-02-25 15:46:39 +01:00
Ines Montani
5d21d3e8b9 Merge branch 'develop' into pr/5008 2020-02-25 15:24:47 +01:00
Ines Montani
d50152b917
Merge pull request #5019 from questoph/master
Optimizing tokenization for Luxembourgish (dealing with apostrophe infixes)
2020-02-25 14:48:50 +01:00
Ines Montani
4440a072d2
Merge pull request #5006 from svlandeg/bugfix/multiproc-underscore
load Underscore state when multiprocessing
2020-02-25 14:46:02 +01:00
svlandeg
d821c95eb0 debugging prints 2020-02-23 17:38:33 +01:00
svlandeg
58568bd0cd fix 2020-02-23 16:45:37 +01:00
svlandeg
0f55e51704 assert we found the root_dir 2020-02-23 16:33:58 +01:00
svlandeg
783da088ea avoid try except 2020-02-23 16:21:21 +01:00
svlandeg
b49a3afd0c use clean_underscore fixture 2020-02-23 15:49:20 +01:00
Tom Keefe
ddf63b97a8
make idx available via to_array (#5030) 2020-02-22 14:13:06 +01:00
Sofie Van Landeghem
44f4142ce4
add two abbreviations and some additional unit tests (#5040) 2020-02-22 14:12:32 +01:00
Sofie Van Landeghem
479bd8d09f
add lemma option to displacy 'dep' visualiser (#5041)
* add lemma option to displacy 'dep' visualiser

* more compact list comprehension

* add option to doc

* fix test and add lemmas to util.get_doc

* fix capital

* remove lemma from get_doc

* cleanup
2020-02-22 14:11:51 +01:00
adrianeboyd
2164e71ea8
Improved Romanian tokenization for UD RRT (#5036)
Modifications to Romanian tokenization to improve tokenization for
UD_Romanian-RRT.
2020-02-19 16:15:59 +01:00
svlandeg
9f1447bf71 where areth thou, file ? 2020-02-19 17:09:29 +02:00
svlandeg
9834527f2c hack to switch between CLI folder setup and local setup 2020-02-19 16:22:48 +02:00
svlandeg
5c2f645470 root dir one level up 2020-02-19 16:15:56 +02:00
svlandeg
b20351792a assert prints for more clarity 2020-02-19 15:51:53 +02:00
Ines Montani
a3335d36b8 Merge branch 'develop' into refactor/remove-symlinks 2020-02-18 17:22:20 +01:00
Ines Montani
09cbeaef27 Remove symlinks, data dir and related stuff 2020-02-18 17:20:17 +01:00
Ines Montani
e3f40a6a0f Tidy up and auto-format 2020-02-18 15:38:18 +01:00
Ines Montani
1278161f47 Tidy up and fix issues 2020-02-18 15:17:03 +01:00
Ines Montani
de11ea753a Merge branch 'master' into develop 2020-02-18 14:47:23 +01:00
Ines Montani
80e95d02b1 Allow spacy attr in token pattern 2020-02-18 14:32:53 +01:00
Jan Jessewitsch
c7e4fe9c5c
Fix/Improve german stop words (#5024)
* Fix german stop words

Two stop words ("einige" and  "einigen") are sticking together.
Remove three nouns that may serve as stop words in a specific context (e.g. religious or news) but are not applicable for general use.

* Create Jan-711.md
2020-02-17 18:59:22 +01:00
Kabir Khan
f6ed07b85c
Use nlp.pipe in EntityRuler for phrase patterns in add_patterns (#4931)
* Fix ent_ids and labels properties when id attribute used in patterns

* use set for labels

* sort end_ids for comparison in entity_ruler tests

* fixing entity_ruler ent_ids test

* add to set

* Run make_doc optimistically if using phrase matcher patterns.

* remove unused coveragerc I was testing with

* format

* Refactor EntityRuler.add_patterns to use nlp.pipe for phrase patterns. Improves speed substantially.

* Removing old add_patterns function

* Fixing spacing

* Make sure token_patterns loaded as well, before generator was being emptied in from_disk
2020-02-16 18:17:47 +01:00
Sofie Van Landeghem
72c964bcf4
define pretrained_dims which is used by build_text_classifier (#5004) 2020-02-16 17:21:17 +01:00
adrianeboyd
3b22eb651b
Sync Span __eq__ and __hash__ (#5005)
* Sync Span __eq__ and __hash__

Use the same tuple for `__eq__` and `__hash__`, including all attributes
except `vector` and `vector_norm`.

* Update entity comparison in tests

Update `assert_docs_equal()` test util to compare `Span` properties for
ents rather than `Span` objects.
2020-02-16 17:20:36 +01:00
adrianeboyd
0c47a53b5e
Use int only in key2row for better performance (#4990)
Cast all keys and rows to `int` in `vectors.key2row` for more efficient
access and serialization.
2020-02-16 17:19:41 +01:00
adrianeboyd
5b102963bf
Require HEAD for is_parsed in Doc.from_array() (#5011)
Modify flag settings so that `DEP` is not sufficient to set `is_parsed`
and only run `set_children_from_heads()` if `HEAD` is provided.

Then the combination `[SENT_START, DEP]` will set deps and not clobber
sent starts with a lot of one-word sentences.
2020-02-16 17:17:09 +01:00
Sofie Van Landeghem
2572460175
add tok2vec parameters to train script to facilitate init_tok2vec (#5021) 2020-02-16 17:16:41 +01:00
Sofie Van Landeghem
a27c77ce62
add message when cli train script throws exception (#5009)
* add message when cli train script throws exception

* fix formatting
2020-02-15 15:50:17 +01:00
questoph
5352fc8fc3 Update tokenizer_exceptions.py 2020-02-14 12:02:15 +01:00
questoph
d1f0b397b5 Update punctuation.py 2020-02-13 22:18:51 +01:00
svlandeg
2729d9164d cleanup 2020-02-12 22:59:37 +01:00
svlandeg
6bbd816569 formatting 2020-02-12 22:50:27 +01:00
svlandeg
34986c7bfd test versions of required libs across different places 2020-02-12 22:49:50 +01:00
svlandeg
6e717c62ed avoid the tests interacting with eachother through the global Underscore variable 2020-02-12 13:21:31 +01:00
svlandeg
7939c63886 use English instead of model 2020-02-12 12:26:27 +01:00
svlandeg
46628d8890 add some asserts 2020-02-12 12:12:52 +01:00
svlandeg
51d37033c8 remove old comment 2020-02-12 12:10:05 +01:00
svlandeg
65f5b48b5d add comment 2020-02-12 12:06:27 +01:00
svlandeg
05dedaa2cf add unit test 2020-02-12 12:00:13 +01:00
svlandeg
ecbb9c4b9f load Underscore state when multiprocessing 2020-02-12 11:50:42 +01:00
Ines Montani
2ed49404e3
Improve setup.py and call into Cython directly (#4952)
* Improve setup.py and call into Cython directly

* Add numpy to setup_requires

* Improve clean helper

* Update setup.cfg

* Try if it builds without pyproject.toml

* Update MANIFEST.in
2020-02-11 17:46:18 -05:00
adrianeboyd
99a543367d
Set GPU before loading any models in train CLI (#4989)
Set the GPU before loading any existing models in the train CLI so that
you can start with a base model and train on GPU.
2020-02-11 17:45:41 -05:00
adrianeboyd
842dfddbb9
Standardize Greek tag map setup (#4997)
* Rename `tag_map.py` to `tag_map_fine.py` to indicate that it's not the
default tag map
* Remove duplicate generic UD tag map and load `../tag_map.py` instead
2020-02-11 17:44:56 -05:00
Sofie Van Landeghem
9b84f987bd
fix grad_clip naming (#4967) 2020-02-10 20:33:16 -05:00
Antti Ajanki
e1f777b151
Improvements for Finnish tokenizer (#4985)
* don't split on a colon. Colon is used to attach suffixes for abbreviations
* tokenize on any of LIST_HYPHENS (except a single hyphen), not just on --
* simplify infix rules by merging similar rules
2020-02-10 20:32:43 -05:00
Sofie Van Landeghem
781e95cf53
Ensure doc.similarity returns a float (on develop) (#4969) 2020-02-10 20:31:49 -05:00
Filip Bednárik
d4f4060bf3
Add Slovak language tools implementation (#4943)
* Add correct stopwords for Slovak language

* Add SNK Tags

* Disable formatting lint for TAGS

* Add example sentences for Slovak language

* Add slovak numerals in base form

* Add lex_attrs to sk init

* Add contributor agreement
2020-02-03 13:03:59 +01:00
Sofie Van Landeghem
cabd60fa1e
Small fixes to as_example (#4957)
* label in span not writable anymore

* Revert "label in span not writable anymore"

This reverts commit ab442338c8.

* fixing yield - remove redundant list
2020-02-03 13:02:12 +01:00
Tyler Couto
9fa9d7f2cb
Fix for Issue 4665 - conllu2json (#4953)
* Fix for Issue 4665 - conllu2json

- Allowing HEAD to be an underscore

* Added contributor agreement
2020-02-03 13:01:48 +01:00
Matthew Honnibal
71b93f33bb Set dev version 2020-01-30 15:41:45 +01:00
Matthew Honnibal
ba6d78132d Fix dev version 2020-01-30 10:35:09 +01:00
Ines Montani
ccef9f2f44 Update version 2020-01-29 17:52:22 +01:00
adrianeboyd
5ee9d8c9b8
Add MORPH attr, add support in retokenizer (#4947)
* Add MORPH attr / symbol for token attrs

* Update retokenizer for MORPH
2020-01-29 17:45:46 +01:00
adrianeboyd
a365359b36
Add convert CLI option to merge CoNLL-U subtokens (#4722)
* Add convert CLI option to merge CoNLL-U subtokens

Add `-T` option to convert CLI that merges CoNLL-U subtokens into one
token in the converted data. Each CoNLL-U sentence is read into a `Doc`
and the `Retokenizer` is used to merge subtokens with features as
follows:

* `orth` is the merged token orth (should correspond to raw text and `#
text`)

* `tag` is all subtoken tags concatenated with `_`, e.g. `ADP_DET`

* `pos` is the POS of the syntactic root of the span (as determined by
the Retokenizer)

* `morph` is all morphological features merged

* `lemma` is all subtoken lemmas concatenated with ` `, e.g. `de o`

* with `-m` all morphological features are combined with the tag using
the separator `__`, e.g.
`ADP_DET__Definite=Def|Gender=Masc|Number=Sing|PronType=Art`

* `dep` is the dependency relation for the syntactic root of the span
(as determined by the Retokenizer)

Concatenated tags will be mapped to the UD POS of the syntactic root
(e.g., `ADP`) and the morphological features will be the combined
features.

In many cases, the original UD subtokens can be reconstructed from the
available features given a language-specific lookup table, e.g.,
Portuguese `do / ADP_DET /
Definite=Def|Gender=Masc|Number=Sing|PronType=Art` is `de / ADP`, `o /
DET / Definite=Def|Gender=Masc|Number=Sing|PronType=Art` or lookup rules
for forms containing open class words like Spanish `hablarlo / VERB_PRON
/
Case=Acc|Gender=Masc|Number=Sing|Person=3|PrepCase=Npr|PronType=Prs|VerbForm=Inf`.

* Clean up imports
2020-01-29 17:44:25 +01:00
Sofie Van Landeghem
569cc98982
Update spaCy for thinc 8.0.0 (#4920)
* Add load_from_config function

* Add train_from_config script

* Merge configs and expose via spacy.config

* Fix script

* Suggest create_evaluation_callback

* Hard-code for NER

* Fix errors

* Register command

* Add TODO

* Update train-from-config todos

* Fix imports

* Allow delayed setting of parser model nr_class

* Get train-from-config working

* Tidy up and fix scores and printing

* Hide traceback if cancelled

* Fix weighted score formatting

* Fix score formatting

* Make output_path optional

* Add Tok2Vec component

* Tidy up and add tok2vec_tensors

* Add option to copy docs in nlp.update

* Copy docs in nlp.update

* Adjust nlp.update() for set_annotations

* Don't shuffle pipes in nlp.update, decruft

* Support set_annotations arg in component update

* Support set_annotations in parser update

* Add get_gradients method

* Add get_gradients to parser

* Update errors.py

* Fix problems caused by merge

* Add _link_components method in nlp

* Add concept of 'listeners' and ControlledModel

* Support optional attributes arg in ControlledModel

* Try having tok2vec component in pipeline

* Fix tok2vec component

* Fix config

* Fix tok2vec

* Update for Example

* Update for Example

* Update config

* Add eg2doc util

* Update and add schemas/types

* Update schemas

* Fix nlp.update

* Fix tagger

* Remove hacks from train-from-config

* Remove hard-coded config str

* Calculate loss in tok2vec component

* Tidy up and use function signatures instead of models

* Support union types for registry models

* Minor cleaning in Language.update

* Make ControlledModel specifically Tok2VecListener

* Fix train_from_config

* Fix tok2vec

* Tidy up

* Add function for bilstm tok2vec

* Fix type

* Fix syntax

* Fix pytorch optimizer

* Add example configs

* Update for thinc describe changes

* Update for Thinc changes

* Update for dropout/sgd changes

* Update for dropout/sgd changes

* Unhack gradient update

* Work on refactoring _ml

* Remove _ml.py module

* WIP upgrade cli scripts for thinc

* Move some _ml stuff to util

* Import link_vectors from util

* Update train_from_config

* Import from util

* Import from util

* Temporarily add ml.component_models module

* Move ml methods

* Move typedefs

* Update load vectors

* Update gitignore

* Move imports

* Add PrecomputableAffine

* Fix imports

* Fix imports

* Fix imports

* Fix missing imports

* Update CLI scripts

* Update spacy.language

* Add stubs for building the models

* Update model definition

* Update create_default_optimizer

* Fix import

* Fix comment

* Update imports in tests

* Update imports in spacy.cli

* Fix import

* fix obsolete thinc imports

* update srsly pin

* from thinc to ml_datasets for example data such as imdb

* update ml_datasets pin

* using STATE.vectors

* small fix

* fix Sentencizer.pipe

* black formatting

* rename Affine to Linear as in thinc

* set validate explicitely to True

* rename with_square_sequences to with_list2padded

* rename with_flatten to with_list2array

* chaining layernorm

* small fixes

* revert Optimizer import

* build_nel_encoder with new thinc style

* fixes using model's get and set methods

* Tok2Vec in component models, various fixes

* fix up legacy tok2vec code

* add model initialize calls

* add in build_tagger_model

* small fixes

* setting model dims

* fixes for ParserModel

* various small fixes

* initialize thinc Models

* fixes

* consistent naming of window_size

* fixes, removing set_dropout

* work around Iterable issue

* remove legacy tok2vec

* util fix

* fix forward function of tok2vec listener

* more fixes

* trying to fix PrecomputableAffine (not succesful yet)

* alloc instead of allocate

* add morphologizer

* rename residual

* rename fixes

* Fix predict function

* Update parser and parser model

* fixing few more tests

* Fix precomputable affine

* Update component model

* Update parser model

* Move backprop padding to own function, for test

* Update test

* Fix p. affine

* Update NEL

* build_bow_text_classifier and extract_ngrams

* Fix parser init

* Fix test add label

* add build_simple_cnn_text_classifier

* Fix parser init

* Set gpu off by default in example

* Fix tok2vec listener

* Fix parser model

* Small fixes

* small fix for PyTorchLSTM parameters

* revert my_compounding hack (iterable fixed now)

* fix biLSTM

* Fix uniqued

* PyTorchRNNWrapper fix

* small fixes

* use helper function to calculate cosine loss

* small fixes for build_simple_cnn_text_classifier

* putting dropout default at 0.0 to ensure the layer gets built

* using thinc util's set_dropout_rate

* moving layer normalization inside of maxout definition to optimize dropout

* temp debugging in NEL

* fixed NEL model by using init defaults !

* fixing after set_dropout_rate refactor

* proper fix

* fix test_update_doc after refactoring optimizers in thinc

* Add CharacterEmbed layer

* Construct tagger Model

* Add missing import

* Remove unused stuff

* Work on textcat

* fix test (again :)) after optimizer refactor

* fixes to allow reading Tagger from_disk without overwriting dimensions

* don't build the tok2vec prematuraly

* fix CharachterEmbed init

* CharacterEmbed fixes

* Fix CharacterEmbed architecture

* fix imports

* renames from latest thinc update

* one more rename

* add initialize calls where appropriate

* fix parser initialization

* Update Thinc version

* Fix errors, auto-format and tidy up imports

* Fix validation

* fix if bias is cupy array

* revert for now

* ensure it's a numpy array before running bp in ParserStepModel

* no reason to call require_gpu twice

* use CupyOps.to_numpy instead of cupy directly

* fix initialize of ParserModel

* remove unnecessary import

* fixes for CosineDistance

* fix device renaming

* use refactored loss functions (Thinc PR 251)

* overfitting test for tagger

* experimental settings for the tagger: avoid zero-init and subword normalization

* clean up tagger overfitting test

* use previous default value for nP

* remove toy config

* bringing layernorm back (had a bug - fixed in thinc)

* revert setting nP explicitly

* remove setting default in constructor

* restore values as they used to be

* add overfitting test for NER

* add overfitting test for dep parser

* add overfitting test for textcat

* fixing init for linear (previously affine)

* larger eps window for textcat

* ensure doc is not None

* Require newer thinc

* Make float check vaguer

* Slop the textcat overfit test more

* Fix textcat test

* Fix exclusive classes for textcat

* fix after renaming of alloc methods

* fixing renames and mandatory arguments (staticvectors WIP)

* upgrade to thinc==8.0.0.dev3

* refer to vocab.vectors directly instead of its name

* rename alpha to learn_rate

* adding hashembed and staticvectors dropout

* upgrade to thinc 8.0.0.dev4

* add name back to avoid warning W020

* thinc dev4

* update srsly

* using thinc 8.0.0a0 !

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
2020-01-29 17:06:46 +01:00
adrianeboyd
a938566b62 Fix Sentencizer.pipe() for empty doc (#4940) 2020-01-28 11:36:49 +01:00
adrianeboyd
06b251dd1e Add support for pos/morphs/lemmas in training data (#4941)
Add support for pos/morphs/lemmas throughout `GoldParse`, `Example`, and
`docs_to_json()`.
2020-01-28 11:36:29 +01:00
adrianeboyd
adc9745718 Modify morphology to support arbitrary features (#4932)
* Restructure tag maps for MorphAnalysis changes

Prepare tag maps for upcoming MorphAnalysis changes that allow
arbritrary features.

* Use default tag map rather than duplicating for ca / uk / vi

* Import tag map into defaults for ga

* Modify tag maps so all morphological fields and features are strings
  * Move features from `"Other"` to the top level
  * Rewrite tuples as strings separated by `","`

* Rewrite morph symbols for fr lemmatizer as strings

* Export MorphAnalysis under spacy.tokens

* Modify morphology to support arbitrary features

Modify `Morphology` and `MorphAnalysis` so that arbitrary features are
supported.

* Modify `MorphAnalysisC` so that it can support arbitrary features and
multiple values per field. `MorphAnalysisC` is redesigned to contain:
  * key: hash of UD FEATS string of morphological features
  * array of `MorphFeatureC` structs that each contain a hash of `Field`
and `Field=Value` for a given morphological feature, which makes it
possible to:
    * find features by field
    * represent multiple values for a given field

* `get_field()` is renamed to `get_by_field()` and is no longer `nogil`.
Instead a new helper function `get_n_by_field()` is `nogil` and returns
`n` features by field.

* `MorphAnalysis.get()` returns all possible values for a field as a
list of individual features such as `["Tense=Pres", "Tense=Past"]`.

* `MorphAnalysis`'s `str()` and `repr()` are the UD FEATS string.

* `Morphology.feats_to_dict()` converts a UD FEATS string to a dict
where:
  * Each field has one entry in the dict
  * Multiple values remain separated by a separator in the value string

* `Token.morph_` returns the UD FEATS string and you can set
`Token.morph_` with a UD FEATS string or with a tag map dict.

* Modify get_by_field to use np.ndarray

Modify `get_by_field()` to use np.ndarray. Remove `max_results` from
`get_n_by_field()` and always iterate over all the fields.

* Rewrite without MorphFeatureC

* Add shortcut for existing feats strings as keys

Add shortcut for existing feats strings as keys in `Morphology.add()`.

* Check for '_' as empty analysis when adding morphs

* Extend helper converters in Morphology

Add and extend helper converters that convert and normalize between:

* UD FEATS strings (`"Case=dat,gen|Number=sing"`)
* per-field dict of feats (`{"Case": "dat,gen", "Number": "sing"}`)
* list of individual features (`["Case=dat", "Case=gen",
"Number=sing"]`)

All converters sort fields and values where applicable.
2020-01-23 22:01:54 +01:00
Sofie Van Landeghem
0a0de85409 Fix gold training (#4938)
* label in span not writable anymore

* Revert "label in span not writable anymore"

This reverts commit ab442338c8.

* ensure doc is not None
2020-01-23 22:00:24 +01:00
adrianeboyd
199d89943e Add as_example to Sentencizer pipe() (#4933) 2020-01-22 15:40:31 +01:00
Yohei Tamura
708a4d27eb fix nlp.evaluate (#4924) (#4925)
* new file:   test_issue4924.py

* modified:   spacy/gold.pyx

* modified:   test_issue4924.py for python2
2020-01-20 12:17:46 +01:00
Kabir Khan
b9afcd56e3 Fix ent_ids and labels properties when id attribute used in patterns (#4900)
* Fix ent_ids and labels properties when id attribute used in patterns

* use set for labels

* sort end_ids for comparison in entity_ruler tests

* fixing entity_ruler ent_ids test

* add to set
2020-01-16 02:01:31 +01:00
adrianeboyd
90c52128dc Improve train CLI with base model (#4911)
Improve train CLI with a provided base model so that you can:

* add a new component
* extend an existing component
* replace an existing component

When the final model and best model are saved, reenable any disabled
components and merge the meta information to include the full pipeline
and accuracy information for all components in the base model plus the
newly added components if needed.
2020-01-16 01:58:51 +01:00
svlandeg
ee828d5a9a bugfix typo conv_window 2020-01-14 09:02:58 +01:00
adrianeboyd
d2f3a44b42 Improve train CLI sentrec scoring (#4892)
* reorder to metrics to prioritize F over P/R
* add sentrec to model metrics
2020-01-08 16:52:14 +01:00
adrianeboyd
e55fa1899a Report length of dev dataset correctly (#4891) 2020-01-08 16:51:51 +01:00
adrianeboyd
e1b493ae85 Add sentrec shortcut to Language (#4890) 2020-01-08 16:51:24 +01:00
adrianeboyd
d24bca62f6 Add CJK to character classes (#4884)
* Add CJK character class as uncased

* Incorporate Chinese URL test case

Un-xfail Chinese URL test instance
2020-01-08 16:50:19 +01:00
adrianeboyd
aef83e8070 Mark most Hungarian tokenizer test cases as slow (#4883)
* Mark most Hungarian tokenizer test cases as slow

Mark most Hungarian tokenizer test cases as slow to reduce the runtime
of the test suite in ordinary usage:

* for normal tests: run default tests plus 10% of the detailed tests
* for slow tests: run all tests

* Rework to mark individual tests as slow
2020-01-08 12:34:06 +01:00
Sofie Van Landeghem
7b96a5e10f Reduce mem usage in training Entity Linker (#4811)
* move nlp processing for el pipe to batch training instead of preprocessing

* adding dev eval back in, and limit in articles instead of entities

* use pipe whenever possible

* few more small doc changes

* access dev data through generator

* tqdm description

* small fixes

* update documentation
2020-01-06 14:59:50 +01:00
Sofie Van Landeghem
6e9b61b49d add warning in debug_data for punctuation in entities (#4853) 2020-01-06 14:59:28 +01:00
adrianeboyd
d652ff215d Add trailing whitespace to multiline test text (#4877) 2020-01-06 14:58:59 +01:00
adrianeboyd
de69bc6509 Fix and improve URL pattern (#4882)
* match domains longer than `hostname.domain.tld` like `www.foo.co.uk`
* expand allowed characters in domain names while only matching
lowercase TLDs so that "this.That" isn't matched as a URL and can be
split on the period as an infix (relevant for at least English, German,
and Tatar)
2020-01-06 14:58:30 +01:00
Sofie Van Landeghem
a1b22e90cd serialize ENT_ID (#4852)
* expand serialization test for custom token attribute

* add failing test for issue 4849

* define ENT_ID as attr and use in doc serialization

* fix few typos
2020-01-06 14:57:34 +01:00
Sofie Van Landeghem
581eeed98b Warning goldparse (#4851)
* label in span not writable anymore

* Revert "label in span not writable anymore"

This reverts commit ab442338c8.

* provide more friendly error msg for parsing file
2020-01-01 13:16:48 +01:00
Ines Montani
83e0a6f3e3
Modernize plac commands for Python 3 (#4836) 2020-01-01 13:15:46 +01:00
Al Johri
1aa2d4dac9 stop rendering mathjax by default in displacy (#4840)
* stop rendering mathjax by default in displacy

* Replace f-string and add comment

Co-authored-by: Ines Montani <ines@ines.io>
2020-01-01 13:15:05 +01:00
Anastasiia Iurshina
1830a12578 Fixes typos (#4843)
* Fixes typos

* Fixes typo

* Contributor agreement
2019-12-29 14:24:13 +01:00
Ivan Echevarria
ef13e0c038 Add n_process to Language.pipe documentation (#4842) [ci skip]
* Add n_process to documentation

* Auto-format and add default [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
2019-12-29 14:23:33 +01:00
Ines Montani
401946d480 Un-xfail passing tests 2019-12-25 18:02:20 +01:00
Ines Montani
a892821c51 More formatting changes 2019-12-25 17:59:52 +01:00
Ines Montani
33a2682d60
Add better schemas and validation using Pydantic (#4831)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Add better schemas and validation using Pydantic

* Revert lookups.md

* Remove unused import

* Update spacy/schemas.py

Co-Authored-By: Sebastián Ramírez <tiangolo@gmail.com>

* Various small fixes

* Fix docstring

Co-authored-by: Sebastián Ramírez <tiangolo@gmail.com>
2019-12-25 12:39:49 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Ines Montani
3431ac42de Fix typo 2019-12-21 21:17:45 +01:00
Ines Montani
21b6d6e0a8 Fix typo 2019-12-21 21:17:31 +01:00
Ines Montani
de33b6d566 Merge branch 'master' into develop 2019-12-21 21:15:46 +01:00
Ines Montani
7c69d30de5 Tidy up and expect warning 2019-12-21 21:14:52 +01:00
Sofie Van Landeghem
732142bf28 facilitate larger training files (#4827)
* add warning for large file and change start var to long

* type for file_length
2019-12-21 21:12:19 +01:00
Ines Montani
d17e7dca9e Fix problems caused by merge conflict 2019-12-21 19:57:41 +01:00
Ines Montani
947dba7141 Merge branch 'master' into develop 2019-12-21 19:04:43 +01:00
Ines Montani
cb4145adc7 Tidy up and auto-format 2019-12-21 19:04:17 +01:00
Ines Montani
158b98a3ef Merge branch 'master' into develop 2019-12-21 18:55:03 +01:00
Olamilekan Wahab
a741de7cf6 Adding support for Yoruba Language (#4614)
* Adding Support for Yoruba

* test text

* Updated test string.

* Fixing encoding declaration.

* Adding encoding to stop_words.py

* Added contributor agreement and removed iranlowo.

* Added removed test files and removed iranlowo to keep project bare.

* Returned CONTRIBUTING.md to default state.

* Added delted conftest entries

* Tidy up and auto-format

* Revert CONTRIBUTING.md

Co-authored-by: Ines Montani <ines@ines.io>
2019-12-21 14:11:50 +01:00
Ines Montani
0750d59e5a Allow setting ner_missing_tag on docs_to_json 2019-12-21 13:47:21 +01:00
Sofie Van Landeghem
8ebbb85117 Documentation for PhraseMatcher constructor (#4826)
* add max_length as argument for init PhraseMatcher

* improve error message too
2019-12-20 23:00:04 +01:00
Sofie Van Landeghem
12158c1e3a Restore tqdm imports (#4804)
* set 4.38.0 to minimal version with color bug fix

* set imports back to proper place

* add upper range for tqdm
2019-12-16 13:12:19 +01:00
Sofie Van Landeghem
557dcf5659 NEL requires sentences to be set (#4801) 2019-12-13 15:55:18 +01:00
tamuhey
1707e77c5e add char_span to Span (#4793) 2019-12-13 15:54:58 +01:00
adrianeboyd
a4cacd3402 Add tag_map argument to CLI debug-data and train (#4750)
Add an argument for a path to a JSON-formatted tag map, which is used to
update and extend the default language tag map.
2019-12-13 10:46:18 +01:00
Sofie Van Landeghem
f9b541f9ef More robust set entities method in KB (#4794)
* add unit test for setting entities with duplicate identifiers

* count the number of actual unique identifiers and throw duplicate warning
2019-12-13 10:45:29 +01:00
adrianeboyd
eb9b1858c4 Add NER map option to convert CLI (#4763)
Instead of a hard-coded NER tag simplification function that was only
intended for NorNE, map NER tags in CoNLL-U converter using a dict
provided as JSON as a command-line option.

Map NER entity types or new tag or to "" for 'O', e.g.:

```
{"PER": "PERSON", "BAD": ""}

=>

B-PER -> B-PERSON
B-BAD -> O
```
2019-12-11 18:20:49 +01:00
Sofie Van Landeghem
5355b0038f Update EL example (#4789)
* update EL example script after sentence-central refactor

* version bump

* set incl_prior to False for quick demo purposes

* clean up
2019-12-11 18:19:42 +01:00
adrianeboyd
38e1bc19f4 Add destructors for states in TransitionSystem (#4686) 2019-12-10 13:23:27 +01:00
adrianeboyd
c208eb6e4d Fix int value handling in Matcher (#4749)
Add `int` values (for `LENGTH`) in _get_attr_values() instead of
treating `int` like `dict`.
2019-12-06 19:22:57 +01:00
Sofie Van Landeghem
780d43aac7 fix bug in EL predict (#4779) 2019-12-06 19:18:14 +01:00
adrianeboyd
676e75838f Include Doc.cats in serialization of Doc and DocBin (#4774)
* Include Doc.cats in to_bytes()

* Include Doc.cats in DocBin serialization

* Add tests for serialization of cats

Test serialization of cats for Doc and DocBin.
2019-12-06 14:07:39 +01:00
Antti Ajanki
e626a011cc Improvements to the Finnish language data (#4738)
* Enable lex_attrs on Finnish

* Copy the Danish tokenizer rules to Finnish

Specifically, don't break hyphenated compound words

* Contributor agreement

* A new file for Finnish tokenizer rules instead of including the Danish ones
2019-12-03 12:55:28 +01:00
Christoph Purschke
a7ee4b6f17 new tests & tokenization fixes (#4734)
- added some tests for tokenization issues
- fixed some issues with tokenization of words with hyphen infix
- rewrote the "tokenizer_exceptions.py" file (stemming from the German version)
2019-12-01 23:08:21 +01:00
adrianeboyd
68f711b409 Fix conllu2json n_sents and raw text (#4728)
Update conllu2json converter to include raw text in final batch.
2019-11-29 10:22:03 +01:00
adrianeboyd
79ba1a3b92 Add lemmas to GoldParse / Example / docs_to_json (#4726) 2019-11-28 14:53:44 +01:00
adrianeboyd
b841d3fe75 Add a tagger-based SentenceRecognizer (#4713)
* Add sent_starts to GoldParse

* Add SentTagger pipeline component

Add `SentTagger` pipeline component as a subclass of `Tagger`.

* Model reduces default parameters from `Tagger` to be small and fast
* Hard-coded set of two labels:
  * S (1): token at beginning of sentence
  * I (0): all other sentence positions
* Sets `token.sent_start` values

* Add sentence segmentation to Scorer

Report `sent_p/r/f` for sentence boundaries, which may be provided by
various pipeline components.

* Add sentence segmentation to CLI evaluate

* Add senttagger metrics/scoring to train CLI

* Rename SentTagger to SentenceRecognizer

* Add SentenceRecognizer to spacy.pipes imports

* Add SentenceRecognizer serialization test

* Shorten component name to sentrec

* Remove duplicates from train CLI output metrics
2019-11-28 11:10:07 +01:00
adrianeboyd
48ea2e8d0f Restructure Sentencizer to follow Pipe API (#4721)
* Restructure Sentencizer to follow Pipe API

Restructure Sentencizer to follow Pipe API so that it can be scored with
`nlp.evaluate()`.

* Add Sentencizer pipe() test
2019-11-27 16:33:34 +01:00
adrianeboyd
9efd3ccbef Update conllu2json MISC column handling (#4715)
Update converter to handle various things in MISC column:

* `SpaceAfter=No` and set raw text accordingly
* plain NER tag
* name=NER (for NorNE)
2019-11-26 16:10:08 +01:00
adrianeboyd
9aab0a55e1 Fix conllu2json converter to output all sentences (#4716)
Make sure that the last batch of sentences is output if n_sents > 1.
2019-11-26 16:05:17 +01:00
adrianeboyd
0c9640ced3 Replace old gold alignment with new gold alignment (#4710)
Replace old gold alignment that allowed for some noise in the alignment between raw and orth with the new simpler alignment that requires that the raw and orth strings are identical except for whitespace and capitalization.

* Replace old alignment with new alignment, removing `_align.pyx` and
its tests
* Remove all quote normalizations
* Enable test for new align
  * Modify test case for quote normalization
2019-11-25 23:13:26 +01:00
Jari Bakken
16cb19e960 update nb tag_map (#4711) 2019-11-25 21:26:26 +01:00
adrianeboyd
392c4880d9 Restructure Example with merged sents as default (#4632)
* Switch to train_dataset() function in train CLI

* Fixes for pipe() methods in pipeline components

* Don't clobber `examples` variable with `as_example` in pipe() methods
* Remove unnecessary traversals of `examples`

* Update Parser.pipe() for Examples

* Add `as_examples` kwarg to `pipe()` with implementation to return
`Example`s

* Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from
`Pipe`)

* Fixes to Example implementation in spacy.gold

* Move `make_projective` from an attribute of Example to an argument of
`Example.get_gold_parses()`

* Head of 0 are not treated as unset

* Unset heads are set to self rather than `None` (which causes problems
while projectivizing)

* Check for `Doc` (not just not `None`) when creating GoldParses for
pre-merged example

* Don't clobber `examples` variable in `iter_gold_docs()`

* Add/modify gold tests for handling projectivity

* In JSON roundtrip compare results from `dev_dataset` rather than
`train_dataset` to avoid projectivization (and other potential
modifications)

* Add test for projective train vs. nonprojective dev versions of the
same `Doc`

* Handle ignore_misaligned as arg rather than attr

Move `ignore_misaligned` from an attribute of `Example` to an argument
to `Example.get_gold_parses()`, which makes it parallel to
`make_projective`.

Add test with old and new align that checks whether `ignore_misaligned`
errors are raised as expected (only for new align).

* Remove unused attrs from gold.pxd

Remove `ignore_misaligned` and `make_projective` from `gold.pxd`

* Restructure Example with merged sents as default

An `Example` now includes a single `TokenAnnotation` that includes all
the information from one `Doc` (=JSON `paragraph`). If required, the
individual sentences can be returned as a list of examples with
`Example.split_sents()` with no raw text available.

* Input/output a single `Example.token_annotation`

* Add `sent_starts` to `TokenAnnotation` to handle sentence boundaries

* Replace `Example.merge_sents()` with `Example.split_sents()`

* Modify components to use a single `Example.token_annotation`

  * Pipeline components
  * conllu2json converter

* Rework/rename `add_token_annotation()` and `add_doc_annotation()` to
`set_token_annotation()` and `set_doc_annotation()`, functions that set
rather then appending/extending.

* Rename `morphology` to `morphs` in `TokenAnnotation` and `GoldParse`

* Add getters to `TokenAnnotation` to supply default values when a given
attribute is not available

* `Example.get_gold_parses()` in `spacy.gold._make_golds()` is only
applied on single examples, so the `GoldParse` is returned saved in the
provided `Example` rather than creating a new `Example` with no other
internal annotation

* Update tests for API changes and `merge_sents()` vs. `split_sents()`

* Refer to Example.goldparse in iter_gold_docs()

Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold`
because a `None` `GoldParse` is generated with ignore_misaligned and
generating it on-the-fly can raise an unwanted AlignmentError

* Fix make_orth_variants()

Fix bug in make_orth_variants() related to conversion from multiple to
one TokenAnnotation per Example.

* Add basic test for make_orth_variants()

* Replace try/except with conditionals

* Replace default morph value with set
2019-11-25 16:03:28 +01:00
Ines Montani
5b36dec7eb Auto-exclude disabled when calling from_disk during load (#4708) 2019-11-25 16:01:22 +01:00
Ines Montani
2160ecfc92 Fix typo [ci skip] 2019-11-25 13:08:19 +01:00
adrianeboyd
2d8c6e1124 Iterate over lr_edges until sents are correct (#4702)
Iterate over lr_edges until all heads are within the current sentence.
Instead of iterating over them for a fixed number of iterations, check
whether the sentence boundaries are correct for the heads and stop when
all are correct. Stop after a maximum of 10 iterations, providing a
warning in this case since the sentence boundaries may not be correct.
2019-11-25 13:06:36 +01:00
Matt Maybeno
c9f1e99787 Agnostic vocab array fix (#4680)
* Use get_array_module instead of numpy

* add contributor agreement
2019-11-23 14:59:52 +01:00
adrianeboyd
46250f60ac Add missing tags to el/es/pt tag maps (#4696)
* Add missing tags to pt tag map

* Add missing tags to es tag map

* Add missing tags to el tag map

* Add missing symbol in el tag map
2019-11-23 14:57:21 +01:00
adrianeboyd
44829950ba Fix Example details for train CLI / pipeline components (#4624)
* Switch to train_dataset() function in train CLI

* Fixes for pipe() methods in pipeline components

* Don't clobber `examples` variable with `as_example` in pipe() methods
* Remove unnecessary traversals of `examples`

* Update Parser.pipe() for Examples

* Add `as_examples` kwarg to `pipe()` with implementation to return
`Example`s

* Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from
`Pipe`)

* Fixes to Example implementation in spacy.gold

* Move `make_projective` from an attribute of Example to an argument of
`Example.get_gold_parses()`

* Head of 0 are not treated as unset

* Unset heads are set to self rather than `None` (which causes problems
while projectivizing)

* Check for `Doc` (not just not `None`) when creating GoldParses for
pre-merged example

* Don't clobber `examples` variable in `iter_gold_docs()`

* Add/modify gold tests for handling projectivity

* In JSON roundtrip compare results from `dev_dataset` rather than
`train_dataset` to avoid projectivization (and other potential
modifications)

* Add test for projective train vs. nonprojective dev versions of the
same `Doc`

* Handle ignore_misaligned as arg rather than attr

Move `ignore_misaligned` from an attribute of `Example` to an argument
to `Example.get_gold_parses()`, which makes it parallel to
`make_projective`.

Add test with old and new align that checks whether `ignore_misaligned`
errors are raised as expected (only for new align).

* Remove unused attrs from gold.pxd

Remove `ignore_misaligned` and `make_projective` from `gold.pxd`

* Refer to Example.goldparse in iter_gold_docs()

Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold`
because a `None` `GoldParse` is generated with ignore_misaligned and
generating it on-the-fly can raise an unwanted AlignmentError

* Update test for ignore_misaligned
2019-11-23 14:32:15 +01:00
Paul O'Leary McCann
f0e3e606a6 Replace python-mecab3 with fugashi for Japanese (#4621)
* Switch from mecab-python3 to fugashi

mecab-python3 has been the best MeCab binding for a long time but it's
not very actively maintained, and since it's based on old SWIG code
distributed with MeCab there's a limit to how effectively it can be
maintained.

Fugashi is a new Cython-based MeCab wrapper I wrote. Since it's not
based on the old SWIG code it's easier to keep it current and make small
deviations from the MeCab C/C++ API where that makes sense.

* Change mecab-python3 to fugashi in setup.cfg

* Change "mecab tags" to "unidic tags"

The tags come from MeCab, but the tag schema is specified by Unidic, so
it's more proper to refer to it that way.

* Update conftest

* Add fugashi link to external deps list for Japanese
2019-11-23 14:31:04 +01:00
Ines Montani
a0fb1acb10 Update version [ci skip] 2019-11-21 18:19:37 +01:00
Ines Montani
b570d5d2ed Increment version [ci skip] 2019-11-21 17:02:32 +01:00
Matthew Honnibal
50f89cb85d Make vectors.find() return keys in correct order (#4691)
* Make vectors.find() return keys in correct order

* Update spacy/vectors.pyx
2019-11-21 16:58:32 +01:00
Ines Montani
5d4eede1e4 Fix test util imports 2019-11-21 16:28:29 +01:00
GuiGel
8f7ab70870 Bugfix/fix entity ruler from disk (#4670)
* fix EntityRuler from_disk bug

* add contributor file

* Test EntityRuler PhraseMatcher deserialization (#4651)

* newline at end of file

* fix copy paste error

* serializing the EntityRuler by itself

* Add unicode declarations for Python 2 and auto-format
2019-11-21 16:26:37 +01:00
adrianeboyd
054df5d90a Add error for non-string labels (#4690)
Add error when attempting to add non-string labels to `Tagger` or
`TextCategorizer`.
2019-11-21 16:24:10 +01:00
adrianeboyd
d7f32b285c Detect more empty matches in tokenizer.explain() (#4675)
* Detect more empty matches in tokenizer.explain()

* Include a few languages in explain non-slow tests

Mark a few languages in tokenizer.explain() tests as not slow so they're
run by default.
2019-11-20 16:31:29 +01:00
Ines Montani
5bf9ab5b03 Tidy up and auto-format 2019-11-20 13:16:33 +01:00
Ines Montani
7f3b00164a Re-add slow marker 2019-11-20 13:15:59 +01:00
Ines Montani
6e303de717 Auto-format 2019-11-20 13:15:24 +01:00
Ines Montani
2e7c896fe5 Update Tokenizer.explain tests 2019-11-20 13:14:11 +01:00
adrianeboyd
2c876eb672 Add tokenizer explain() debugging method (#4596)
* Expose tokenizer rules as a property

Expose the tokenizer rules property in the same way as the other core
properties. (The cache resetting is overkill, but consistent with
`from_bytes` for now.)

Add tests and update Tokenizer API docs.

* Update Hungarian punctuation to remove empty string

Update Hungarian punctuation definitions so that `_units` does not match
an empty string.

* Use _load_special_tokenization consistently

Use `_load_special_tokenization()` and have it to handle `None` checks.

* Fix precedence of `token_match` vs. special cases

Remove `token_match` check from `_split_affixes()` so that special cases
have precedence over `token_match`. `token_match` is checked only before
infixes are split.

* Add `make_debug_doc()` to the Tokenizer

Add `make_debug_doc()` to the Tokenizer as a working implementation of
the pseudo-code in the docs.

Add a test (marked as slow) that checks that `nlp.tokenizer()` and
`nlp.tokenizer.make_debug_doc()` return the same non-whitespace tokens
for all languages that have `examples.sentences` that can be imported.

* Update tokenization usage docs

Update pseudo-code and algorithm description to correspond to
`nlp.tokenizer.make_debug_doc()` with example debugging usage.

Add more examples for customizing tokenizers while preserving the
existing defaults.

Minor edits / clarifications.

* Revert "Update Hungarian punctuation to remove empty string"

This reverts commit f0a577f7a5.

* Rework `make_debug_doc()` as `explain()`

Rework `make_debug_doc()` as `explain()`, which returns a list of
`(pattern_string, token_string)` tuples rather than a non-standard
`Doc`. Update docs and tests accordingly, leaving the visualization for
future work.

* Handle cases with bad tokenizer patterns

Detect when tokenizer patterns match empty prefixes and suffixes so that
`explain()` does not hang on bad patterns.

* Remove unused displacy image

* Add tokenizer.explain() to usage docs
2019-11-20 13:07:25 +01:00
Matthew Honnibal
a3c43a1692
Support no hidden layer in parser and NER (#4672)
* Support no hidden layers for parser

* Fix parser model for depth 1

* Fix parser for hidden depth=0

* Add option of non-blocking to CUDA stream
2019-11-19 15:54:34 +01:00
Matthew Honnibal
4b123952aa
Add option for improved NER feature extraction (#4671)
* Support option of three NER features

* Expose nr_feature parser model setting

* Give feature tokens better name

* Test nr_feature=3 for NER

* Format
2019-11-19 15:03:14 +01:00
Elijah Rippeth
5ad5c4b44a Add initial Korean support (#4660)
* add hangul and jamo char classes.

* add initial Korean lexical attributes.

* add contributor agreement
2019-11-18 12:56:07 +01:00
Ines Montani
74b951fe61
Fix xpassing tests (#4657)
* Ignore internal warnings

* Un-xfail passing tests

* Skip instead of xfail
2019-11-16 20:20:53 +01:00
Ines Montani
3bd15055ce
Fix bug in Language.evaluate for components without .pipe (#4662) 2019-11-16 20:20:37 +01:00
adrianeboyd
bdfb696677 Fix conllu2json converter to output all sentences (#4656)
Make sure that the last batch of sentences is output if n_sents > 1.
2019-11-15 17:08:32 +01:00
Ines Montani
d64cfce546 Remove unnecessary newline replace 2019-11-15 16:19:01 +01:00
Christoph Purschke
433748e867 Fix basic language support for Luxembourgish (by adding punctuation.py) (#4648)
* Update __init__.py

* Create punctuation.py

* Update tokenizer_exceptions.py

* Create questoph.md

* Update questoph.md

* Update test_text.py

* Update test_text.py

* Update test_text.py

* Update test_text.py
2019-11-15 16:16:47 +01:00
adrianeboyd
faaa832518 Generalize handling of tokenizer special cases (#4259)
* Generalize handling of tokenizer special cases

Handle tokenizer special cases more generally by using the Matcher
internally to match special cases after the affix/token_match
tokenization is complete.

Instead of only matching special cases while processing balanced or
nearly balanced prefixes and suffixes, this recognizes special cases in
a wider range of contexts:

* Allows arbitrary numbers of prefixes/affixes around special cases
* Allows special cases separated by infixes

Existing tests/settings that couldn't be preserved as before:

* The emoticon '")' is no longer a supported special case
* The emoticon ':)' in "example:)" is a false positive again

When merged with #4258 (or the relevant cache bugfix), the affix and
token_match properties should be modified to flush and reload all
special cases to use the updated internal tokenization with the Matcher.

* Remove accidentally added test case

* Really remove accidentally added test

* Reload special cases when necessary

Reload special cases when affixes or token_match are modified. Skip
reloading during initialization.

* Update error code number

* Fix offset and whitespace in Matcher special cases

* Fix offset bugs when merging and splitting tokens
* Set final whitespace on final token in inserted special case

* Improve cache flushing in tokenizer

* Separate cache and specials memory (temporarily)
* Flush cache when adding special cases
* Repeated `self._cache = PreshMap()` and `self._specials = PreshMap()`
are necessary due to this bug:
https://github.com/explosion/preshed/issues/21

* Remove reinitialized PreshMaps on cache flush

* Update UD bin scripts

* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)

* Use special Matcher only for cases with affixes

* Reinsert specials cache checks during normal tokenization for special
cases as much as possible
  * Additionally include specials cache checks while splitting on infixes
  * Since the special Matcher needs consistent affix-only tokenization
    for the special cases themselves, introduce the argument
    `with_special_cases` in order to do tokenization with or without
    specials cache checks
* After normal tokenization, postprocess with special cases Matcher for
special cases containing affixes

* Replace PhraseMatcher with Aho-Corasick

Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.

The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.

Fixes #4308.

* Restore support for pickling

* Fix internal keyword add/remove for numpy arrays

* Add test for #4248, clean up test

* Improve efficiency of special cases handling

* Use PhraseMatcher instead of Matcher
* Improve efficiency of merging/splitting special cases in document
  * Process merge/splits in one pass without repeated token shifting
  * Merge in place if no splits

* Update error message number

* Remove UD script modifications

Only used for timing/testing, should be a separate PR

* Remove final traces of UD script modifications

* Update UD bin scripts

* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)

* Add missing loop for match ID set in search loop

* Remove cruft in matching loop for partial matches

There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.

* Replace dict trie with MapStruct trie

* Fix how match ID hash is stored/added

* Update fix for match ID vocab

* Switch from map_get_unless_missing to map_get

* Switch from numpy array to Token.get_struct_attr

Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.

Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)

* Restructure imports to export find_matches

* Implement full remove()

Remove unnecessary trie paths and free unused maps.

Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.

* Switch to PhraseMatcher.find_matches

* Switch to local cdef functions for span filtering

* Switch special case reload threshold to variable

Refer to variable instead of hard-coded threshold

* Move more of special case retokenize to cdef nogil

Move as much of the special case retokenization to nogil as possible.

* Rewrap sort as stdsort for OS X

* Rewrap stdsort with specific types

* Switch to qsort

* Fix merge

* Improve cmp functions

* Fix realloc

* Fix realloc again

* Initialize span struct while retokenizing

* Temporarily skip retokenizing

* Revert "Move more of special case retokenize to cdef nogil"

This reverts commit 0b7e52c797.

* Revert "Switch to qsort"

This reverts commit a98d71a942.

* Fix specials check while caching

* Modify URL test with emoticons

The multiple suffix tests result in the emoticon `:>`, which is now
retokenized into one token as a special case after the suffixes are
split off.

* Refactor _apply_special_cases()

* Use cdef ints for span info used in multiple spots

* Modify _filter_special_spans() to prefer earlier

Parallel to #4414, modify _filter_special_spans() so that the earlier
span is preferred for overlapping spans of the same length.

* Replace MatchStruct with Entity

Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.

* Replace Entity with more general SpanC

* Replace MatchStruct with SpanC

* Add error in debug-data if no dev docs are available (see #4575)

* Update azure-pipelines.yml

* Revert "Update azure-pipelines.yml"

This reverts commit ed1060cf59.

* Use latest wasabi

* Reorganise install_requires

* add dframcy to universe.json (#4580)

* Update universe.json [ci skip]

* Fix multiprocessing for as_tuples=True (#4582)

* Fix conllu script (#4579)

* force extensions to avoid clash between example scripts

* fix arg order and default file encoding

* add example config for conllu script

* newline

* move extension definitions to main function

* few more encodings fixes

* Add load_from_docbin example [ci skip]

TODO: upload the file somewhere

* Update README.md

* Add warnings about 3.8 (resolves #4593) [ci skip]

* Fixed typo: Added space between "recognize" and "various" (#4600)

* Fix DocBin.merge() example (#4599)

* Replace function registries with catalogue (#4584)

* Replace functions registries with catalogue

* Update __init__.py

* Fix test

* Revert unrelated flag [ci skip]

* Bugfix/dep matcher issue 4590 (#4601)

* add contributor agreement for prilopes

* add test for issue #4590

* fix on_match params for DependencyMacther (#4590)

* Minor updates to language example sentences (#4608)

* Add punctuation to Spanish example sentences

* Combine multilanguage examples for lang xx

* Add punctuation to nb examples

* Always realloc to a larger size

Avoid potential (unlikely) edge case and cymem error seen in #4604.

* Add error in debug-data if no dev docs are available (see #4575)

* Update debug-data for GoldCorpus / Example

* Ignore None label in misaligned NER data
2019-11-13 21:24:35 +01:00
adrianeboyd
d67b0f196a Fix initialization of token mappings in new align (#4640)
Initialize all values in `a2b` and `b2a` since `numpy.empty()` otherwise
result unspecified integers.
2019-11-13 21:22:18 +01:00
adrianeboyd
3ac4e8eb7a Fix minor issues in debug-data (#4636)
* Add error in debug-data if no dev docs are available (see #4575)

* Update debug-data for GoldCorpus / Example

* Ignore None label in misaligned NER data
2019-11-13 15:25:03 +01:00
Sofie Van Landeghem
e48a09df4e Example class for training data (#4543)
* OrigAnnot class instead of gold.orig_annot list of zipped tuples

* from_orig to replace from_annot_tuples

* rename to RawAnnot

* some unit tests for GoldParse creation and internal format

* removing orig_annot and switching to lists instead of tuple

* rewriting tuples to use RawAnnot (+ debug statements, WIP)

* fix pop() changing the data

* small fixes

* pop-append fixes

* return RawAnnot for existing GoldParse to have uniform interface

* clean up imports

* fix merge_sents

* add unit test for 4402 with new structure (not working yet)

* introduce DocAnnot

* typo fixes

* add unit test for merge_sents

* rename from_orig to from_raw

* fixing unit tests

* fix nn parser

* read_annots to produce text, doc_annot pairs

* _make_golds fix

* rename golds_to_gold_annots

* small fixes

* fix encoding

* have golds_to_gold_annots use DocAnnot

* missed a spot

* merge_sents as function in DocAnnot

* allow specifying only part of the token-level annotations

* refactor with Example class + underlying dicts

* pipeline components to work with Example objects (wip)

* input checking

* fix yielding

* fix calls to update

* small fixes

* fix scorer unit test with new format

* fix kwargs order

* fixes for ud and conllu scripts

* fix reading data for conllu script

* add in proper errors (not fixed numbering yet to avoid merge conflicts)

* fixing few more small bugs

* fix EL script
2019-11-11 17:35:27 +01:00
adrianeboyd
91f89f9693 Fix realloc in retokenizer.split() (#4606)
Always realloc to a size larger than `doc.max_length` in
`retokenizer.split()` (or cymem will throw errors).
2019-11-11 16:26:46 +01:00
adrianeboyd
0b9a5f4074 Rework Chinese language initialization and tokenization (#4619)
* Rework Chinese language initialization

* Create a `ChineseTokenizer` class
  * Modify jieba post-processing to handle whitespace correctly
  * Modify non-jieba character tokenization to handle whitespace correctly

* Add a `create_tokenizer()` method to `ChineseDefaults`

* Load lexical attributes

* Update Chinese tag_map for UD v2

* Add very basic Chinese tests

* Test tokenization with and without jieba

* Test `like_num` attribute

* Fix try_jieba_import()

* Fix zh code formatting
2019-11-11 14:23:21 +01:00
adrianeboyd
4d85f67eee Minor updates to language example sentences (#4608)
* Add punctuation to Spanish example sentences

* Combine multilanguage examples for lang xx

* Add punctuation to nb examples
2019-11-07 22:34:58 +01:00
Priscilla de Abreu Lopes
39e79fcc86 Bugfix/dep matcher issue 4590 (#4601)
* add contributor agreement for prilopes

* add test for issue #4590

* fix on_match params for DependencyMacther (#4590)
2019-11-07 12:01:06 +01:00
Ines Montani
09cec3e41b
Replace function registries with catalogue (#4584)
* Replace functions registries with catalogue

* Update __init__.py

* Fix test

* Revert unrelated flag [ci skip]
2019-11-07 11:45:22 +01:00
Matthew Honnibal
4e43c0ba93 Fix multiprocessing for as_tuples=True (#4582) 2019-11-04 20:29:03 +01:00
Ines Montani
cf4ec88b38 Use latest wasabi 2019-11-04 02:38:45 +01:00
Ines Montani
6ec119d976 Add error in debug-data if no dev docs are available (see #4575) 2019-11-02 16:08:11 +01:00
adrianeboyd
56ad3a3988 Add LAS per dependency to Scorer (#4560) 2019-10-31 21:18:16 +01:00
Matthew Honnibal
de98d66f87 Set version to v2.2.2 2019-10-31 15:53:31 +01:00
Matthw Honnibal
55f2241d72 Merge branch 'master' of https://github.com/explosion/spaCy 2019-10-31 15:37:52 +01:00
Ines Montani
df4c9ae3dc Fix formatting [ci skip] 2019-10-31 15:10:25 +01:00
Ines Montani
59358d9b71
Remove box-decoration-break from entities in displacy (#4564) 2019-10-31 15:09:43 +01:00
Matthw Honnibal
8b9954d1b7 Set version to v2.2.2.dev5 2019-10-31 15:06:19 +01:00
Ines Montani
2c107f02a4 Auto-format [ci skip] 2019-10-31 15:01:56 +01:00
Matthew Honnibal
e82306937e Put Tok2Vec refactor behind feature flag (#4563)
* Add back pre-2.2.2 tok2vec

* Add simple tok2vec tests

* Add simple tok2vec tests

* Reformat

* Fix CharacterEmbed in new tok2vec

* Fix legacy tok2vec

* Resolve circular imports

* Fix test for Python 2
2019-10-31 15:01:15 +01:00
Ines Montani
5e9849b60f Auto-format [ci skip] 2019-10-30 19:27:18 +01:00
Ines Montani
afe4a428f7
Fix pipeline analysis on remove pipe (#4557)
Validate *after* component is removed, not before
2019-10-30 19:04:17 +01:00
Matthew Honnibal
6b874ef096 Set version to v2.2.2.dev4 2019-10-30 17:36:20 +01:00
Ines Montani
85f2b04c45
Support span._. in component decorator attrs (#4555)
* Support span._. in component decorator attrs

* Adjust error [ci skip]
2019-10-30 17:19:36 +01:00
Matthew Honnibal
c2f5f9f572 Set version to v2.2.2.dev3 2019-10-29 16:37:58 +01:00
Sofie Van Landeghem
33ba9ff464 set encodings explicitly to utf8 (#4551) 2019-10-29 13:16:55 +01:00
Matthew Honnibal
9e210fa7fd
Fix tok2vec structure after model registry refactor (#4549)
The model registry refactor of the Tok2Vec function broke loading models
trained with the previous function, because the model tree was slightly
different. Specifically, the new function wrote:

    concatenate(norm, prefix, suffix, shape)

To build the embedding layer. In the previous implementation, I had used
the operator overloading shortcut:

    ( norm | prefix | suffix | shape )

This actually gets mapped to a binary association, giving something
like:

    concatenate(norm, concatenate(prefix, concatenate(suffix, shape)))

This is a different tree, so the layers iterate differently and we
loaded the weights wrongly.
2019-10-28 23:59:03 +01:00
Matthew Honnibal
bade60fe64 Set version to v2.2.2.dev1 2019-10-28 19:09:34 +01:00