Commit Graph

574 Commits

Author SHA1 Message Date
Ines Montani
9ba715ed16 Tidy up and auto-format 2021-02-13 12:55:56 +11:00
svlandeg
aa3ad8825d loop instead of any 2021-02-12 13:14:30 +01:00
svlandeg
a52d466bfc any instead of all 2021-02-11 20:50:55 +01:00
Ines Montani
ad9ce3c8f6 Fix issue #6950: allow pickling Tok2Vec with listeners 2021-02-11 11:37:39 +11:00
Sofie Van Landeghem
a323ef90df
ensure the loss value is cast as float (#6928) 2021-02-07 07:51:56 +08:00
René Octavio Queiroz Dias
999ff03b19
fix: Fix textcat labels to expect a Optional[Iterable[str]] instead of Optional[Dict] (#6911)
* docs: Add agreement

* bug: Regression test

Issue #6908

* fix: Changed from Dict to Iterable[str]

Fix #6908

* Update test to use make_tempdir

* fix: Fix WindowsPath error

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-02-04 23:37:13 +01:00
Sofie Van Landeghem
f638306598
remove link_components flag again (#6883) 2021-02-02 10:08:40 +08:00
Ines Montani
d0c3775712 Replace links to nightly docs [ci skip] 2021-01-30 20:09:38 +11:00
Ines Montani
e6accb3a9e Tidy up and auto-format 2021-01-30 12:52:33 +11:00
Ines Montani
2102082478 Make Tok2Vec.remove_listener return bool
Whether listener was removed
2021-01-29 21:41:38 +11:00
Ines Montani
0f3e3eedc2 Add Tok2vec.remove_listener 2021-01-29 19:36:38 +11:00
Sofie Van Landeghem
837a4f53c2
Error handling in nlp.pipe (#6817)
* add error handler for pipe methods

* add unit tests

* remove pipe method that are the same as their base class

* have Language keep track of a default error handler

* cleanup

* formatting

* small refactor

* add documentation
2021-01-29 08:51:21 +08:00
Sofie Van Landeghem
6b68ad027b
Fix beam NER resizing (#6834)
* move label check to sub methods

* add tests
2021-01-27 23:39:14 +11:00
Matthew Honnibal
05050210f3 Dont add labels implicitly for parser 2021-01-27 13:04:47 +11:00
Matthew Honnibal
1d20e21f3e Add labels implicitly for parser and ner 2021-01-27 12:54:47 +11:00
Matthew Honnibal
f049df1715
Revert "Set annotations in update" (#6810)
* Revert "Set annotations in update (#6767)"

This reverts commit e680efc7cc.

* Fix version

* Update spacy/pipeline/entity_linker.py

* Update spacy/pipeline/entity_linker.py

* Update spacy/pipeline/tagger.pyx

* Update spacy/pipeline/tok2vec.py

* Update spacy/pipeline/tok2vec.py

* Update spacy/pipeline/transition_parser.pyx

* Update spacy/pipeline/transition_parser.pyx

* Update website/docs/api/multilabel_textcategorizer.md

* Update website/docs/api/tok2vec.md

* Update website/docs/usage/layers-architectures.md

* Update website/docs/usage/layers-architectures.md

* Update website/docs/api/transformer.md

* Update website/docs/api/textcategorizer.md

* Update website/docs/api/tagger.md

* Update spacy/pipeline/entity_linker.py

* Update website/docs/api/sentencerecognizer.md

* Update website/docs/api/pipe.md

* Update website/docs/api/morphologizer.md

* Update website/docs/api/entityrecognizer.md

* Update spacy/pipeline/entity_linker.py

* Update spacy/pipeline/multitask.pyx

* Update spacy/pipeline/tagger.pyx

* Update spacy/pipeline/tagger.pyx

* Update spacy/pipeline/textcat.py

* Update spacy/pipeline/textcat.py

* Update spacy/pipeline/textcat.py

* Update spacy/pipeline/tok2vec.py

* Update spacy/pipeline/trainable_pipe.pyx

* Update spacy/pipeline/trainable_pipe.pyx

* Update spacy/pipeline/transition_parser.pyx

* Update spacy/pipeline/transition_parser.pyx

* Update website/docs/api/entitylinker.md

* Update website/docs/api/dependencyparser.md

* Update spacy/pipeline/trainable_pipe.pyx
2021-01-25 22:18:45 +08:00
Sofie Van Landeghem
e680efc7cc
Set annotations in update (#6767)
* bump to 3.0.0rc4

* do set_annotations in component update calls

* update docs and remove set_annotations flag

* fix EL test
2021-01-20 11:49:25 +11:00
Sofie Van Landeghem
57640aa838
warn when frozen components break listener pattern (#6766)
* warn when frozen components break listener pattern

* few notes in the documentation

* update arg name

* formatting

* cleanup

* specify listeners return type
2021-01-20 11:12:35 +11:00
Ines Montani
e697609fef Update docstrings and types [ci skip] 2021-01-18 22:31:26 +11:00
Adriane Boyd
bf0cdae8d4
Add token_splitter component (#6726)
* Add long_token_splitter component

Add a `long_token_splitter` component for use with transformer
pipelines. This component splits up long tokens like URLs into smaller
tokens. This is particularly relevant for pretrained pipelines with
`strided_spans`, since the user can't change the length of the span
`window` and may not wish to preprocess the input texts.

The `long_token_splitter` splits tokens that are at least
`long_token_length` tokens long into smaller tokens of `split_length`
size.

Notes:

* Since this is intended for use as the first component in a pipeline,
the token splitter does not try to preserve any token annotation.
* API docs to come when the API is stable.

* Adjust API, add test

* Fix name in factory
2021-01-17 19:54:41 +08:00
Adriane Boyd
43a752a2a0
Fix assertion in default get oracle sequence usage (#6738)
Remove assertion for default debug value in 
`get_oracle_sequence_from_state`.
2021-01-16 16:07:39 +01:00
Matthew Honnibal
f0c696b4aa Fix failed merge of #6694 patch 2021-01-16 13:44:11 +11:00
Adriane Boyd
9328dd5625
Handle unset token.morph in Morphologizer (#6704)
* Handle unset token.morph in Morphologizer

Handle unset `token.morph` in `Morphologizer.initialize` and
`Morphologizer.get_loss`. If both `token.morph` and `token.pos` are
unset, treat the annotation as missing rather than empty.

* Add token.has_morph()
2021-01-15 17:20:10 +01:00
Matthew Honnibal
7b3f0c6f1b
Questionable fix for parser training bug with misaligned sentences (#6694)
* Questionable fix for parser training bug with misaligned sentences

* Fix

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-01-15 14:18:24 +01:00
Ines Montani
b0b743597c Tidy up and auto-format 2021-01-15 11:57:36 +11:00
svlandeg
fec9b81aa2 Merge remote-tracking branch 'upstream/develop' into feature/missing-dep 2021-01-13 17:46:12 +01:00
svlandeg
ed53bb979d cleanup 2021-01-13 14:20:05 +01:00
svlandeg
5b598bd1d5 formatting 2021-01-12 17:28:41 +01:00
Adriane Boyd
ad43cbb042
Sync missing and misaligned values in Tagger loss (#6689)
Use `None` for both missing and misaligned annotation in
`Tagger.get_loss`, reverting to the default missing value in the loss
function.
2021-01-10 11:30:37 +11:00
svlandeg
dd12c6c8fd allow missing information in deps and heads annotations 2021-01-07 19:10:32 +01:00
svlandeg
1abeca90a6 refer to _parser_internals.nonproj.DELIMITER 2021-01-07 18:58:13 +01:00
Sofie Van Landeghem
75d9019343
Fix types of Tok2Vec encoding architectures (#6442)
* fix TorchBiLSTMEncoder documentation

* ensure the types of the encoding Tok2vec layers are correct

* update references from v1 to v2 for the new architectures
2021-01-07 16:39:27 +11:00
Sofie Van Landeghem
8c1a23209f
Getting scores out of beam_parser (#6684)
* clean up of ner tests

* beam_parser tests

* implement get_beam_parses and scored_parses for the dep parser

* we don't have to add the parse if there are no arcs
2021-01-07 16:28:27 +11:00
Sofie Van Landeghem
402dbc5bae
Getting scores out of beam_ner (#6575)
* small fixes and formatting

* bring test_issue4313 up-to-date, currently fails

* formatting

* add get_beam_parses method back

* add scored_ents function

* delete tag map
2021-01-06 12:02:32 +01:00
Sofie Van Landeghem
afc5714d32
multi-label textcat component (#6474)
* multi-label textcat component

* formatting

* fix comment

* cleanup

* fix from #6481

* random edit to push the tests

* add explicit error when textcat is called with multi-label gold data

* fix error nr

* small fix
2021-01-06 13:07:14 +11:00
Sofie Van Landeghem
29b59086f9
Prevent 0-length mem alloc (#6653)
* prevent 0-length mem alloc by adding asserts

* fix lexeme mem allocation
2021-01-06 12:50:17 +11:00
Ines Montani
991669c934 Tidy up and auto-format 2021-01-05 13:41:53 +11:00
Adriane Boyd
cabd4ae5b1
Use logger.warning instead of logger.warn (#6596)
Use `logger.warning` instead of deprecated `logger.warn`.
2020-12-21 08:25:10 +08:00
Sofie Van Landeghem
282a3b49ea
Fix parser resizing when there is no upper layer (#6460)
* allow resizing of the parser model even when upper=False

* update from spacy.TransitionBasedParser.v1 to v2

* bugfix
2020-12-18 18:56:57 +08:00
Sofie Van Landeghem
0a923a7915
Tagger robustness (#6580)
* require labels in taggers

* ensure tagger works with incomplete data
2020-12-18 18:51:47 +08:00
Matthew Honnibal
8656a08777
Add beam_parser and beam_ner components for v3 (#6369)
* Get basic beam tests working

* Get basic beam tests working

* Compile _beam_utils

* Remove prints

* Test beam density

* Beam parser seems to train

* Draft beam NER

* Upd beam

* Add hypothesis as dev dependency

* Implement missing is-gold-parse method

* Implement early update

* Fix state hashing

* Fix test

* Fix test

* Default to non-beam in parser constructor

* Improve oracle for beam

* Start refactoring beam

* Update test

* Refactor beam

* Update nn

* Refactor beam and weight by cost

* Update ner beam settings

* Update test

* Add __init__.pxd

* Upd test

* Fix test

* Upd test

* Fix test

* Remove ring buffer history from StateC

* WIP change arc-eager transitions

* Add state tests

* Support ternary sent start values

* Fix arc eager

* Fix NER

* Pass oracle cut size for beam

* Fix ner test

* Fix beam

* Improve StateC.clone

* Improve StateClass.borrow

* Work directly with StateC, not StateClass

* Remove print statements

* Fix state copy

* Improve state class

* Refactor parser oracles

* Fix arc eager oracle

* Fix arc eager oracle

* Use a vector to implement the stack

* Refactor state data structure

* Fix alignment of sent start

* Add get_aligned_sent_starts method

* Add test for ae oracle when bad sentence starts

* Fix sentence segment handling

* Avoid Reduce that inserts illegal sentence

* Update preset SBD test

* Fix test

* Remove prints

* Fix sent starts in Example

* Improve python API of StateClass

* Tweak comments and debug output of arc eager

* Upd test

* Fix state test

* Fix state test
2020-12-13 09:08:32 +08:00
Ines Montani
f2571b5ec4
Merge pull request #6444 from adrianeboyd/chore/update-develop-from-master 2020-12-09 13:09:58 +11:00
Ines Montani
dfaef27f90
Merge pull request #6503 from adrianeboyd/feature/lemmatizer-rule-warning-pos
Warn on empty POS for the rule-based lemmatizer
2020-12-09 11:34:16 +11:00
Ines Montani
1980203229 Merge branch 'master' into pr/6444 2020-12-09 11:09:40 +11:00
Adriane Boyd
6c221d4841 Fix subsequent pipe detection in EntityRuler
Fix subsequent pipe detection to detect the position of the current
object by comparing the component itself rather than from the factory
name.
2020-12-08 10:01:30 +01:00
Adriane Boyd
d70950605c Warn on empty POS for the rule-based lemmatizer
Add a warning to the rule-based lemmatizer for any tokens without POS
annotation.
2020-12-04 11:46:15 +01:00
svlandeg
73fc1ed963 remove labels from morphologizer constructor 2020-11-11 21:48:50 +01:00
svlandeg
d5a920325f remove labels from constructor 2020-11-11 21:34:12 +01:00
Adriane Boyd
a7e7d6c6c9
Ignore misaligned in Morphologizer.get_loss (#6363)
Fix bug where `Morphologizer.get_loss` treated misaligned annotation as
`EMPTY_MORPH` rather than ignoring it. Remove unneeded default `EMPTY_MORPH`
mappings.
2020-11-10 20:15:09 +08:00
Sofie Van Landeghem
8ef056cf98
fix embed_size in Entity Linker architecture (#6343) 2020-11-04 22:20:13 +01:00
Adriane Boyd
a4b32b9552
Handle missing reference values in scorer (#6286)
* Handle missing reference values in scorer

Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.

Attributes without unset states:

* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation

Additional changes:

* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`

* Fix import

* Update return types
2020-11-03 15:47:18 +01:00
Sofie Van Landeghem
75a202ce65
TextCat updates and fixes (#6263)
* small fix in example imports

* throw error when train_corpus or dev_corpus is not a string

* small fix in custom logger example

* limit macro_auc to labels with 2 annotations

* fix typo

* also create parents of output_dir if need be

* update documentation of textcat scores

* refactor TextCatEnsemble

* fix tests for new AUC definition

* bump to 3.0.0a42

* update docs

* rename to spacy.TextCatEnsemble.v2

* spacy.TextCatEnsemble.v1 in legacy

* cleanup

* small fix

* update to 3.0.0rc2

* fix import that got lost in merge

* cursed IDE

* fix two typos
2020-10-18 14:50:41 +02:00
svlandeg
44e14ccae8 one more losses fix 2020-10-14 15:11:34 +02:00
svlandeg
0aa8851878 always return losses 2020-10-14 15:00:49 +02:00
svlandeg
68d79796c6 add test for vocab after serializing KB 2020-10-10 20:59:48 +02:00
Ines Montani
bfa3931c9d
Revert added_strings change (#6236) 2020-10-10 18:55:07 +02:00
Adriane Boyd
39aabf50ab Also rename to include_static_vectors in CharEmbed 2020-10-09 11:54:48 +02:00
Sofie Van Landeghem
d093d6343b
TrainablePipe (#6213)
* rename Pipe to TrainablePipe

* split functionality between Pipe and TrainablePipe

* remove unnecessary methods from certain components

* cleanup

* hasattr(component, "pipe") should be sufficient again

* remove serialization and vocab/cfg from Pipe

* unify _ensure_examples and validate_examples

* small fixes

* hasattr checks for self.cfg and self.vocab

* make is_resizable and is_trainable properties

* serialize strings.json instead of vocab

* fix KB IO + tests

* fix typos

* more typos

* _added_strings as a set

* few more tests specifically for _added_strings field

* bump to 3.0.0a36
2020-10-08 21:33:49 +02:00
Ines Montani
064575d79d
Merge pull request #6216 from svlandeg/feature/nel-initialize 2020-10-08 11:14:12 +02:00
svlandeg
eaf5c265cb set_kb method for entity_linker 2020-10-08 10:34:01 +02:00
Ines Montani
010956d493 Clear rule-based components on initialize 2020-10-08 09:51:31 +02:00
svlandeg
33c2d4af16 move kb_loader to initialize for NEL instead of constructor 2020-10-07 14:56:00 +02:00
svlandeg
ff9ac39c88 read entity_ruler patterns with srsly.read_jsonl.v1 2020-10-05 22:50:14 +02:00
svlandeg
193e0d5a98 add docs for entity_ruler.initialize 2020-10-05 18:04:08 +02:00
svlandeg
9eb813a35d Merge remote-tracking branch 'upstream/develop' into fix/patterns-init 2020-10-05 17:49:44 +02:00
svlandeg
4e3ace4b8c is_trainable method 2020-10-05 17:43:42 +02:00
svlandeg
65abd77779 add finish_update to Pipe 2020-10-05 16:23:33 +02:00
svlandeg
251b3eb4e5 add initialize method for entity_ruler 2020-10-05 14:59:13 +02:00
Sofie Van Landeghem
f4f49f5877
update blis (#6198)
* allow higher blis version

* fix typo

* bump to 3.0.0a34

* fix pins in other files
2020-10-05 14:58:56 +02:00
Ines Montani
11347f34da Tidy up, tests and docs 2020-10-04 13:54:05 +02:00
Matthew Honnibal
96b636c2d3 Update attribute ruler 2020-10-04 13:08:21 +02:00
Ines Montani
bcd52e5486 Tidy up errors and warnings 2020-10-04 11:16:31 +02:00
Ines Montani
d3b3663942 Adjust error message and add test 2020-10-04 10:11:27 +02:00
Ines Montani
cc08c88a89
Merge pull request #6187 from svlandeg/fix/begin_training_pipe 2020-10-04 10:01:02 +02:00
svlandeg
3f657ed3a1 implement warning in __init_subclass__ instead 2020-10-03 22:34:10 +02:00
Matthew Honnibal
3b2a78720c Upd morphologizer 2020-10-03 19:35:19 +02:00
Matthew Honnibal
4fccd2ceaf Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-10-03 19:13:55 +02:00
Matthew Honnibal
8ea8b7d940 Support loading labels in morphologizer 2020-10-03 19:13:42 +02:00
Ines Montani
80603f0fa5 Make SentenceRecognizer.label_data return None
Overwrite the method from the base class (Tagger) but don't export anything in "init labels"
2020-10-03 18:54:09 +02:00
Ines Montani
3bc3c05fcc Tidy up and auto-format 2020-10-03 17:20:18 +02:00
Ines Montani
dd542ec6a4
Fix label initialization of textcat component (#6190) 2020-10-03 17:07:38 +02:00
Ines Montani
f0b30aedad
Make lemmatizers use initialize logic (#6182)
* Make lemmatizer use initialize logic and tidy up

* Fix typo

* Raise for uninitialized tables
2020-10-02 15:42:36 +02:00
Adriane Boyd
86c3ec9c2b
Refactor Token morph setting (#6175)
* Refactor Token morph setting

* Remove `Token.morph_`
* Add `Token.set_morph()`
  * `0` resets `token.c.morph` to unset
  * Any other values are passed to `Morphology.add`

* Add token.morph setter to set from MorphAnalysis
2020-10-01 22:21:46 +02:00
Ines Montani
f2627157c8 Update docs [ci skip] 2020-10-01 17:38:17 +02:00
Ines Montani
b799af16de Don't raise in Pipe.initialize if not implemented 2020-09-30 00:05:27 +02:00
Ines Montani
fa47f87924 Tidy up and auto-format 2020-09-29 21:39:28 +02:00
Matthew Honnibal
a4da3120b4 Fix multitasks 2020-09-29 18:33:16 +02:00
Matthew Honnibal
0b5c72fce2 Fix incorrect docstrings 2020-09-29 18:30:38 +02:00
Matthew Honnibal
e4f535a964 Fix Pipe.labels 2020-09-29 16:55:07 +02:00
Matthew Honnibal
1fd002180e Allow more components to use labels 2020-09-29 16:48:56 +02:00
Matthew Honnibal
99bff78617 Use labels in tagger 2020-09-29 16:48:44 +02:00
Matthew Honnibal
58c8d4b414 Add label_data property to pipeline 2020-09-29 16:22:13 +02:00
Ines Montani
f171903139 Clean up sgd and pipeline -> nlp 2020-09-29 12:20:26 +02:00
Ines Montani
42f0e4c946 Clean up 2020-09-29 12:14:08 +02:00
Matthew Honnibal
9c8b2524fe Upd initialize args 2020-09-29 12:08:37 +02:00
Matthew Honnibal
f2d1b7feb5 Clean up sgd 2020-09-29 12:00:08 +02:00
Ines Montani
dec984a9c1 Update Language.initialize and support components/tokenizer settings 2020-09-29 11:52:45 +02:00
Matthew Honnibal
b3b6868639 Remove 'sgd' arg from component initialize 2020-09-29 11:42:35 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
Adriane Boyd
6c25e60089 Simplify string match IDs for AttributeRuler 2020-09-26 11:12:39 +02:00
Matthew Honnibal
702edf52a0 Fix attributeruler 2020-09-26 00:30:48 +02:00
Matthew Honnibal
821f37254c Fix attributeruler 2020-09-26 00:19:53 +02:00
Matthew Honnibal
98327f66a9 Fix attributeruler key 2020-09-25 23:20:50 +02:00
Matthew Honnibal
16475528f7
Fix skipped documents in entity scorer (#6137)
* Fix skipped documents in entity scorer

* Add back the skipping of unannotated entities

* Update spacy/scorer.py

* Use more specific NER scorer

* Fix import

* Fix get_ner_prf

* Add scorer

* Fix scorer

Co-authored-by: Ines Montani <ines@ines.io>
2020-09-24 20:38:57 +02:00
Ines Montani
0b52b6904c Update entity_linker.py 2020-09-24 17:10:35 +02:00
Adriane Boyd
59340606b7
Add option to disable Matcher errors (#6125)
* Add option to disable Matcher errors

* Add option to disable Matcher errors when a doc doesn't contain a
particular type of annotation

Minor additional change:

* Update `AttributeRuler.load_from_morph_rules` to allow direct `MORPH`
values

* Rename suppress_errors to allow_missing

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Refactor annotation checks in Matcher and PhraseMatcher

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-24 16:54:39 +02:00
Sofie Van Landeghem
c7eedd3534
updates to NEL functionality (#6132)
* NEL: read sentences and ents from reference

* fiddling with sent_start annotations

* add KB serialization test

* KB write additional file with strings.json

* score_links function to calculate NEL P/R/F

* formatting

* documentation
2020-09-24 16:53:59 +02:00
Ines Montani
ae51f580c1 Fix handling of score_weights 2020-09-24 10:27:33 +02:00
svlandeg
dd2292793f 'parser' instead of 'deps' for state_type 2020-09-23 16:53:49 +02:00
svlandeg
6c85fab316 state_type and extra_state_tokens instead of nr_feature_tokens 2020-09-23 13:35:09 +02:00
Sofie Van Landeghem
d53c84b6d6
avoid None callback (#6100) 2020-09-22 13:54:44 +02:00
svlandeg
781fae678b Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-17 09:24:36 +02:00
Adriane Boyd
7e4cd7575c
Refactor Docs.is_ flags (#6044)
* Refactor Docs.is_ flags

* Add derived `Doc.has_annotation` method

  * `Doc.has_annotation(attr)` returns `True` for partial annotation

  * `Doc.has_annotation(attr, require_complete=True)` returns `True` for
    complete annotation

* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`

* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.

Notes on `Doc.has_annotation`:

* `HEAD` is converted to `DEP` because heads don't have an unset state

* Accept `IS_SENT_START` as a synonym of `SENT_START`

Additional changes:

* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`

* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`

* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`

* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`

* Fix call to set_children_form_heads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-17 00:14:01 +02:00
Adriane Boyd
a119667a36
Clean up spacy.tokens (#6046)
* Clean up spacy.tokens

* Update `set_children_from_heads`:
  * Don't check `dep` when setting lr_* or sentence starts
  * Set all non-sentence starts to `False`

* Use `set_children_from_heads` in `Token.head` setter
  * Reduce similar/duplicate code (admittedly adds a bit of overhead)
  * Update sentence starts consistently

* Remove unused `Doc.set_parse`

* Minor changes:
  * Declare cython variables (to avoid cython warnings)
  * Clean up imports

* Modify set_children_from_heads to set token range

Modify `set_children_from_heads` so that it adjust tokens within a
specified range rather then the whole document.

Modify the `Token.head` setter to adjust only the tokens affected by the
new head assignment.
2020-09-16 20:32:38 +02:00
Adriane Boyd
f3db3f6fe0
Add vectors option to CharacterEmbed (#6069)
* Add vectors option to CharacterEmbed

* Update spacy/pipeline/morphologizer.pyx

* Adjust default morphologizer config

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-16 17:45:04 +02:00
Adriane Boyd
d722a439aa
Remove unneeded methods in senter and morphologizer (#6074)
Now that the tagger doesn't manage the tag map, the child classes senter
and morphologizer don't need to override the serialization methods.
2020-09-16 17:39:41 +02:00
svlandeg
714a5a05c6 test for custom readers with ml_datasets >= 0.2 2020-09-16 16:39:55 +02:00
Sofie Van Landeghem
3216a33149
positive_label config for textcat (#6062)
* hook up positive_label in textcat

* unit tests

* documentation

* formatting

* tests

* fix typo

* move verify_config to after begin_training

* revert accidential commit
2020-09-14 17:08:00 +02:00
Sofie Van Landeghem
744df9814a
define threshold for scoring textcat in TextCat config (#6055)
* define threshold for scoring textcat in TextCat config

* fix unit test and documentation
2020-09-13 14:15:52 +02:00
Sofie Van Landeghem
cb66ea7400
Remove simple_ner code (#6041)
* remove simple_ner code

* remove unused _biluo and _iob files
2020-09-09 16:11:27 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042)
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
2020-09-09 10:31:03 +02:00
Sofie Van Landeghem
60f22e1800
Pipe API (#6034)
* ensure Language passes on valid examples for initialization

* fix tagger model initialization

* check for valid get_examples across components

* assume labels were added before begin_training

* fix senter initialization

* fix morphologizer initialization

* use methods to check arguments

* test textcat init, requires thinc>=8.0.0a31

* fix tok2vec init

* fix entity linker init

* use islice

* fix simple NER

* cleanup debug model

* fix assert statements

* fix tests

* throw error when adding a label if the output layer can't be resized anymore

* fix test

* add failing test for simple_ner

* UX improvements

* morphologizer UX

* assume begin_training gets a representative set and processes the labels

* remove assumptions for output of untrained NER model

* restore test for original purpose
2020-09-08 22:44:25 +02:00
Matthew Honnibal
dae22f3dfa Fix ignoring of punct labels 2020-09-05 14:11:59 +02:00
Ines Montani
864a697e63 Merge branch 'develop' into master-tmp 2020-09-04 13:15:36 +02:00
Ines Montani
ab1bb421ed Update docs links in codebase 2020-09-04 12:58:50 +02:00
Ines Montani
5afe6447cd registry.assets -> registry.misc 2020-09-03 17:31:14 +02:00
Matthew Honnibal
737a1408d9 Improve implementation of fix #6010
Follow-ups to the parser efficiency fix.

* Avoid introducing new counter for number of pushes
* Base cut on number of transitions, keeping it more even
* Reintroduce the randomization we had in v2.
2020-09-02 14:42:32 +02:00
Matthew Honnibal
c1bf3a5602
Fix significant performance bug in parser training (#6010)
The parser training makes use of a trick for long documents, where we
use the oracle to cut up the document into sections, so that we can have
batch items in the middle of a document. For instance, if we have one
document of 600 words, we might make 6 states, starting at words 0, 100,
200, 300, 400 and 500.

The problem is for v3, I screwed this up and didn't stop parsing! So
instead of a batch of [100, 100, 100, 100, 100, 100], we'd have a batch
of [600, 500, 400, 300, 200, 100]. Oops.

The implementation here could probably be improved, it's annoying to
have this extra variable in the state. But this'll do.

This makes the v3 parser training 5-10 times faster, depending on document
lengths. This problem wasn't in v2.
2020-09-02 12:57:13 +02:00
Matthew Honnibal
4cce32f090 Fix tagger initialization 2020-09-01 16:38:34 +02:00
Adriane Boyd
9130094199
Prevent Tagger model init with 0 labels (#5984)
* Prevent Tagger model init with 0 labels

Raise an error before trying to initialize a tagger model with 0 labels.

* Add dummy tagger label for test

* Remove tagless tagger model initializiation

* Fix error number after merge

* Add dummy tagger label to test

* Fix formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-31 21:24:33 +02:00
Sofie Van Landeghem
ec14744ee4
Rename Transformer listener (#6001)
* rename to spacy-transformers.TransformerListener

* add some more tok2vec tests

* use select_pipes

* fix docs - annotation setter was not changed in the end
2020-08-31 12:41:39 +02:00
Ines Montani
45f46a5c85
Merge pull request #5993 from explosion/feature/disabled-components 2020-08-29 15:58:41 +02:00
Ines Montani
34146750d4 Use frozen list with custom errors
We don't want to break backwards compatibility too much but we also want to provide the best possible UX
2020-08-29 15:20:11 +02:00
Ines Montani
2bc31e15c9 Tidy up and auto-format [ci skip] 2020-08-29 13:01:10 +02:00
Ines Montani
f45095a666
Merge pull request #5995 from adrianeboyd/bugfix/attribute-ruler-bugfixes 2020-08-29 12:38:30 +02:00
Matthew Honnibal
58f19421b1 Return empty batch from tok2vec listener if no doc.tensor 2020-08-29 03:46:50 +02:00
Adriane Boyd
0104bd1600 Sort the AttributeRuler matches by rule order
Sort the returned matches by rule order (the `match_id`) so that the
rules are applied in the order they were added. This is necessary, for
instance, if the `AttributeRuler` is used for the tag map and later
rules require POS tags.
2020-08-28 21:01:06 +02:00
Adriane Boyd
8674b17651 Serialize AttributeRuler.patterns
Serialize `AttributeRuler.patterns` instead of the individual lists to
simplify the serialized and so that patterns are reloaded exactly as
they were originally provided (preserving `_attrs_unnormed`).
2020-08-28 20:44:45 +02:00
Matthew Honnibal
d3ffe4ca63 Fix error when tagger was initialized with no labels 2020-08-27 18:56:58 +02:00
Matthew Honnibal
95adb58f15 Force tagger to pass batch of docs into model in begin_training 2020-08-27 03:21:03 +02:00
Adriane Boyd
90d88729e0
Add AttributeRuler.score (#5963)
* Add AttributeRuler.score

Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.

Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.

* Update docs
2020-08-26 15:39:30 +02:00
Sofie Van Landeghem
79d460e3a2
Weights & Biases logger for train CLI (#5971)
* quick test as part of train script

* train_logger in config, default ConsoleLogger in loggers catalogue

* entitiy typo

* add wandb_logger

* cleanup

* Update spacy/cli/train_logger.py

Co-authored-by: Ines Montani <ines@ines.io>

* move loggers to gold.loggers

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-26 15:24:33 +02:00
Sofie Van Landeghem
358cbb21e3
Define candidate generator in EL config (#5876)
* candidate generator as separate part of EL config

* update comment

* ent instead of str as input for candidate generation

* Span instead of str: correct type indication

* fix types

* unit test to create new candidate generator

* fix replace_pipe argument passing

* move error message, general cleanup

* add vocab back to KB constructor

* provide KB as callable from Vocab arg

* rename to kb_loader, fix KB serialization as part of the EL pipe

* fix typo

* reformatting

* cleanup

* fix comment

* fix wrongly duplicated code from merge conflict

* rename dump to to_disk

* from_disk instead of load_bulk

* update test after recent removal of set_morphology in tagger

* remove old doc
2020-08-18 16:10:36 +02:00
Ines Montani
8128e5eb35 Replace lexeme_norm warning with logging 2020-08-14 15:00:52 +02:00
Ines Montani
e4d0990857 Only receive from listener if listener exists 2020-08-14 14:58:48 +02:00
Adam Bittlingmayer
7b33b2854f
Add Armenian sentence-final verchaket, Greek question mark and Arabic question mark to default punct (#5910)
* Add Armenian sentence-final verchaket

* Add Greek and Arabic question marks, and contributor agreement

* Check box
2020-08-12 15:36:14 +02:00
graue70
49e690bde1
Fix typos in comments (#5904)
* Fix typo in comment

* Fix typo

* Add spaCy Contributor Agreement
2020-08-12 15:35:25 +02:00
graue70
ba84371ab0
Use init parameter (#5909) 2020-08-11 23:41:58 +02:00
Ines Montani
950832f087
Tidy up pipes (#5906)
* Tidy up pipes

* Fix init, defaults and raise custom errors

* Update docs

* Update docs [ci skip]

* Apply suggestions from code review

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Tidy up error handling and validation, fix consistency

* Simplify get_examples check

* Remove unused import [ci skip]

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-11 23:29:31 +02:00
Ines Montani
f79e4c094d Remove generic type
Seems to cause error on Python 3.8 with Cython?
2020-08-10 17:24:30 +02:00
Ines Montani
64f2f84098 Update docstrings and docs [ci skip] 2020-08-10 13:45:22 +02:00
Ines Montani
a4b448eec4 Remove unused compiler flag 2020-08-10 13:13:18 +02:00
Ines Montani
3eaeb73342 Tidy up and auto-format 2020-08-09 22:36:23 +02:00
Ines Montani
d5c78c7a34 Update docs and fix consistency 2020-08-09 22:31:52 +02:00
Ines Montani
7c6854d8d4 Fix missing imports 2020-08-09 22:28:29 +02:00
Ines Montani
a15c5fb191 Update docstrings and docs 2020-08-09 16:10:48 +02:00
Matthew Honnibal
134d933d67 Add docstring for entity linker factory 2020-08-09 15:19:28 +02:00
Matthew Honnibal
992ee1c02f Update tagger docstring 2020-08-09 15:09:31 +02:00
Matthew Honnibal
ebf9a7acbf Add textcat docstring 2020-08-09 15:07:09 +02:00
Matthew Honnibal
bbd8acd4bf Add docstrings for parser and NER. Simplify some arguments 2020-08-09 14:46:13 +02:00
Matthew Honnibal
39a3d64c01 Add docstrings for Tok2Vec component 2020-08-09 00:48:03 +02:00
Ines Montani
fe29ceec9e Merge branch 'develop' into docs/model-docstrings 2020-08-07 18:42:01 +02:00
Ines Montani
3a193eb8f1 Fix imports, types and default configs 2020-08-07 18:40:54 +02:00
Ines Montani
6f3649923c
Merge pull request #5893 from explosion/feature/validate-arg 2020-08-07 15:47:20 +02:00
Adriane Boyd
e962784531
Add Lemmatizer and simplify related components (#5848)
* Add Lemmatizer and simplify related components

* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests

Differences:

* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map

* Fix test

* Initial fix for Lemmatizer config/serialization

* Adjust init test to be more generic

* Adjust init test to force empty Lookups

* Add simple cache to rule-based lemmatizer

* Convert language-specific lemmatizers

Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.

* Fix French and Polish lemmatizers

* Remove outdated UPOS conversions

* Update Russian lemmatizer init in tests

* Add minimal init/run tests for custom lemmatizers

* Add option to overwrite existing lemmas

* Update mode setting, lookup loading, and caching

* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods

* Implement strict when lang is not found in lookups

* Fix tables/lookups in make_lemmatizer

* Reallow provided lookups and allow for stricter checks

* Add lookups asset to all Lemmatizer pipe tests

* Rename lookups in lemmatizer init test

* Clean up merge

* Refactor lookup table loading

* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.

Additional slight refactor of lookups:

* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`

* Move registry assets into test methods

* Refactor lookups tables config

Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.

* Add pipe and score to lemmatizer

* Simplify Tagger.score

* Add missing import

* Clean up imports and auto-format

* Remove unused kwarg

* Tidy up and auto-format

* Update docstrings for Lemmatizer

Update docstrings for Lemmatizer.

Additionally modify `is_base_form` API to take `Token` instead of
individual features.

* Update docstrings

* Remove tag map values from Tagger.add_label

* Update API docs

* Fix relative link in Lemmatizer API docs
2020-08-07 15:27:13 +02:00
Ines Montani
fc9a4fe827 Update attribute ruler 2020-08-07 14:43:55 +02:00
Ines Montani
a8404c3517 validation -> validate 2020-08-07 14:43:47 +02:00
Adriane Boyd
b8d0c23857 Add AttributeRuler API docs
With additional minor updates to AttributeRuler docstrings.
2020-08-07 12:43:23 +02:00
Adriane Boyd
06c3a5e048
Add pipe to AttributeRuler (#5889) 2020-08-06 19:43:09 +02:00
Ines Montani
9b7f198390 Fix format 2020-08-06 19:30:53 +02:00
Ines Montani
56c17973aa Use "raise ... from" in custom errors for better tracebacks 2020-08-05 23:53:21 +02:00
Ines Montani
586d695775 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-08-05 16:01:11 +02:00
Ines Montani
e68459296d Tidy up and auto-format 2020-08-05 16:00:59 +02:00
Matthew Honnibal
b9df4d6116 Fix textcat.begin_training if vectors set 2020-08-05 15:40:36 +02:00
Adriane Boyd
af125875cf
Update SimpleNER (#5878)
* Fix `get_loss` to use NER annotation
* Add labels as part of cfg
* Add simple overfitting test
2020-08-05 14:43:29 +02:00
Sofie Van Landeghem
34873c4911
Example Dict format consistency (#5858)
* consistently use upper-case IDS in token_annotation format and for get_aligned

* remove ID from to_dict (not used in from_dict either)

* fix test

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 22:22:26 +02:00
Adriane Boyd
fa79a0db9f
Add AttributeRuler for token attribute exceptions (#5842)
* Add AttributeRuler for token attribute exceptions

Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.

Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.

There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.

* Fix default name

* Update name in error message

* Extend AttributeRuler functionality

* Add option to initialize with a dict of AttributeRuler patterns

* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)

* Improve types

* Sort spans before processing

* Fix index boundaries in Span

* Refactor retokenizer to separate attrs methods

Add top-level `normalize_token_attrs` and `set_token_attrs` methods.

* Update AttributeRuler to use refactored methods

Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.

* Update spacy/pipeline/attributeruler.py

Co-authored-by: Ines Montani <ines@ines.io>

* Make API more similar to EntityRuler

* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`

* Make attrs_unnormed private

* Add test loading patterns from assets

* Revert "Fix index boundaries in Span"

This reverts commit 8f8a5c3386.

* Add Span index boundary checks (#5861)

* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 17:02:39 +02:00
Sofie Van Landeghem
82347110f5
Default empty KB in EL component (#5872)
* EL field documentation

* documentation consistent with docs

* default empty KB, initialize vocab separately

* formatting

* add test for changing the default entity vector length

* update comment
2020-08-04 14:34:09 +02:00
Adriane Boyd
ac14ce7c30
Prefer earlier spans in EntityRuler (#5843)
Similar to #4414, update the sorting in EntityRuler to prefer the first
span in overlapping spans.
2020-07-31 16:09:32 +02:00
Adriane Boyd
901801b33b Fix default arguments in DependencyParser.score 2020-07-31 10:55:44 +02:00
Sofie Van Landeghem
ca491722ad
The Parser is now a Pipe (2) (#5844)
* moving syntax folder to _parser_internals

* moving nn_parser and transition_system

* move nn_parser and transition_system out of internals folder

* moving nn_parser code into transition_system file

* rename transition_system to transition_parser

* moving parser_model and _state to ml

* move _state back to internals

* The Parser now inherits from Pipe!

* small code fixes

* removing unnecessary imports

* remove link_vectors_to_models

* transition_system to internals folder

* little bit more cleanup

* newlines
2020-07-30 23:30:54 +02:00
Ines Montani
7a21775cd0
Merge pull request #5834 from explosion/feature/vectors 2020-07-29 18:49:26 +02:00
Ines Montani
b0f57a0cac Update docs and consistency 2020-07-29 15:14:07 +02:00
Matthew Honnibal
c27309f839
Merge branch 'develop' into feature/vectors 2020-07-29 14:54:10 +02:00
Ines Montani
ff0bc05da8 Fix docstrings [ci skip] 2020-07-29 14:09:37 +02:00
Ines Montani
6e2623d3f8 Fix docstring [ci skip] 2020-07-29 14:08:05 +02:00
Ines Montani
8d56260d92 Fix docstrings [ci skip] 2020-07-29 14:07:13 +02:00
Ines Montani
80b18124d2 Fix docstring [ci skip] 2020-07-29 14:03:35 +02:00
Matthew Honnibal
6a6b09bd32 Update morphologizer model 2020-07-29 14:01:12 +02:00
Matthew Honnibal
1784c95827 Clean up link_vectors_to_models unused stuff 2020-07-29 14:01:11 +02:00
Matthew Honnibal
9987ea9e4d Fix Tok2Vec begin_training 2020-07-29 14:00:10 +02:00
Ines Montani
e257e66ab9 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-29 11:36:45 +02:00
Ines Montani
e0ffe36e79 Update docstrings, docs and types 2020-07-29 11:36:42 +02:00
Sofie Van Landeghem
40c995b1be
Option for returning only greedy matches (#5771)
* add "greedy" option for match pattern

* distinction between greedy FIRST or LONGEST

* check for proper values, throw custom warning otherwise

* unxfail one more test

* add comment in docstring

* add test that LONGEST also prefers first match if equal length

* use c arrays for more efficient processing

* rename 'greediness' to 'greedy'
2020-07-29 11:04:43 +02:00
Ines Montani
2c7a32cf12 Remove unused methods 2020-07-28 16:50:02 +02:00
Ines Montani
ae4d8a6ffd Update docstrings, docs and pipe consistency 2020-07-28 13:37:31 +02:00
Ines Montani
894e20c466 Merge branch 'develop' into feature/component-scores 2020-07-27 18:14:39 +02:00
Ines Montani
d8b519c23c API docs, docstrings and argument consistency 2020-07-27 18:11:45 +02:00
Adriane Boyd
34c92dfe63 Add missing Scorer imports 2020-07-27 15:08:51 +02:00
Adriane Boyd
8bb0507777 Add and update score methods and score weights
Add and update `score` methods, provided `scores`, and default weights
`default_score_weights` for pipeline components.

* `scores` provides all top-level keys returned by `score` (merely informative, similar to `assigns`).
* `default_score_weights` provides the default weights for a default config.
* The keys from `default_score_weights` determine which values will be
shown in the `spacy train` output, so keys with weight `0.0` will be
displayed but not counted toward the overall score.
2020-07-27 14:44:53 +02:00