This was the only registry that expected the registered objects to be dictionaries instead of functions that return something. We can still support plain dicts but we should also support functions for consistency
The Language.use_params method was failing if you passed in None, which
meant we had to use awkward conditionals for the parameter averaging.
This solves the problem.
Add official support for the `DependencyMatcher`. Redesign the pattern
specification. Fix and extend operator implementations. Update API docs
and add usage docs.
Patterns
--------
Refactor pattern structure to:
```
{
"LEFT_ID": str,
"REL_OP": str,
"RIGHT_ID": str,
"RIGHT_ATTRS": dict,
}
```
The first node contains only `RIGHT_ID` and `RIGHT_ATTRS` and all
subsequent nodes contain all four keys.
New operators
-------------
Because of the way patterns are constructed from left to right, it's
helpful to have `follows` operators along with `precedes` operators. Add
operators for simple precedes / follows alongside immediate precedes /
follows.
* `.*`: precedes
* `;`: immediately follows
* `;*`: follows
Operator fixes
--------------
* `<` and `<<` do not include the node itself
* Fix reversed order for all operators involving linear precedence (`.`,
all sibling operators)
* Linear precedence operators do not match nodes outside the same parse
Additional fixes
----------------
* Use v3 Matcher API
* Support `get` and `remove`
* Support pickling
Follow-ups to the parser efficiency fix.
* Avoid introducing new counter for number of pushes
* Base cut on number of transitions, keeping it more even
* Reintroduce the randomization we had in v2.
The parser training makes use of a trick for long documents, where we
use the oracle to cut up the document into sections, so that we can have
batch items in the middle of a document. For instance, if we have one
document of 600 words, we might make 6 states, starting at words 0, 100,
200, 300, 400 and 500.
The problem is for v3, I screwed this up and didn't stop parsing! So
instead of a batch of [100, 100, 100, 100, 100, 100], we'd have a batch
of [600, 500, 400, 300, 200, 100]. Oops.
The implementation here could probably be improved, it's annoying to
have this extra variable in the state. But this'll do.
This makes the v3 parser training 5-10 times faster, depending on document
lengths. This problem wasn't in v2.
A long time ago we went to some trouble to try to clean up "unused"
strings, to avoid the `StringStore` growing in long-running processes.
This never really worked reliably, and I think it was a really wrong
approach. It's much better to let the user reload the `nlp` object as
necessary, now that the string encoding is stable (in v1, the string IDs
were sequential integers, making reloading the NLP object really
annoying.)
The extra book-keeping does make some performance difference, and the
feature is unsed, so it's past time we killed it.
* Prevent Tagger model init with 0 labels
Raise an error before trying to initialize a tagger model with 0 labels.
* Add dummy tagger label for test
* Remove tagless tagger model initializiation
* Fix error number after merge
* Add dummy tagger label to test
* Fix formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* rename to spacy-transformers.TransformerListener
* add some more tok2vec tests
* use select_pipes
* fix docs - annotation setter was not changed in the end
Sort the returned matches by rule order (the `match_id`) so that the
rules are applied in the order they were added. This is necessary, for
instance, if the `AttributeRuler` is used for the tag map and later
rules require POS tags.
Serialize `AttributeRuler.patterns` instead of the individual lists to
simplify the serialized and so that patterns are reloaded exactly as
they were originally provided (preserving `_attrs_unnormed`).
* Add AttributeRuler.score
Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.
Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.
* Update docs
* Fix up/download of http and local paths
* Support git_sparse_checkout for assets
* Fix scorer
* Handle already-present directories for git assets
* Improve convert command
* Fix support for existant files in git assets
* Support branches in git sparse checkout
* Format
* Fix git assets
* Document git block in assets
* Fix test
* Fix test
* Revert "Fix test"
This reverts commit cf3097260f.
* Revert "Fix test"
This reverts commit 964d636e27.
* Dont multiply p/r/f by 100
* Display scores * 100 during training
* Update stop_words.py
Hebrew STOP WORDS
* Update stop_words.py
* contributor
* contributor
* add some common domain extentions
support human number 1K/1M....
* support human number 1K/1M....
* hebrew number tokenize
1K/1M implement in EN
* test human tokenize fix
* test
* heb like num
revert human number change
* heb like num
* Create lex_attrs.py
Hello,
I am missing a CZECH language in SpaCy. So I would like to help to push it a little. This file is base on others lex_attrs.py files just with translation to Czech.
* Update __init__.py
Updated for use with new Czech Lex_attrs file
* Update stop_words.py
* Create test_text.py
* add like_num testing for czech
Co-authored-by: holubvl3 <47881982+holubvl3@users.noreply.github.com>
Co-authored-by: holubvl3 <vilemrousi@gmail.com>
Co-authored-by: Vladimír Holubec <vholubec@arcdata.cz>
* Create lex_attrs.py
Hello,
I am missing a CZECH language in SpaCy. So I would like to help to push it a little. This file is base on others lex_attrs.py files just with translation to Czech.
* Update __init__.py
Updated for use with new Czech Lex_attrs file
* Update stop_words.py
* Create test_text.py
Co-authored-by: Vladimír Holubec <vholubec@arcdata.cz>
- Accept any case for label names in ents and colors option, even if actual predicted label uses different casing
- Don't text-transform: uppercase visually, if it's important to users that the label is represented as-is in the UI
- As much as I dislike YAML, it seemed like a better format here because it allows us to add comments if we want to explain the different recommendations
- Don't include the generated JS in the repo by default and build it on the fly when running or deploying the site. This ensures it's always up to date.
- Simplify jinja_to_js script and use fewer dependencies
* candidate generator as separate part of EL config
* update comment
* ent instead of str as input for candidate generation
* Span instead of str: correct type indication
* fix types
* unit test to create new candidate generator
* fix replace_pipe argument passing
* move error message, general cleanup
* add vocab back to KB constructor
* provide KB as callable from Vocab arg
* rename to kb_loader, fix KB serialization as part of the EL pipe
* fix typo
* reformatting
* cleanup
* fix comment
* fix wrongly duplicated code from merge conflict
* rename dump to to_disk
* from_disk instead of load_bulk
* update test after recent removal of set_morphology in tagger
* remove old doc
* Add Lemmatizer and simplify related components
* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests
Differences:
* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map
* Fix test
* Initial fix for Lemmatizer config/serialization
* Adjust init test to be more generic
* Adjust init test to force empty Lookups
* Add simple cache to rule-based lemmatizer
* Convert language-specific lemmatizers
Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.
* Fix French and Polish lemmatizers
* Remove outdated UPOS conversions
* Update Russian lemmatizer init in tests
* Add minimal init/run tests for custom lemmatizers
* Add option to overwrite existing lemmas
* Update mode setting, lookup loading, and caching
* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods
* Implement strict when lang is not found in lookups
* Fix tables/lookups in make_lemmatizer
* Reallow provided lookups and allow for stricter checks
* Add lookups asset to all Lemmatizer pipe tests
* Rename lookups in lemmatizer init test
* Clean up merge
* Refactor lookup table loading
* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.
Additional slight refactor of lookups:
* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`
* Move registry assets into test methods
* Refactor lookups tables config
Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.
* Add pipe and score to lemmatizer
* Simplify Tagger.score
* Add missing import
* Clean up imports and auto-format
* Remove unused kwarg
* Tidy up and auto-format
* Update docstrings for Lemmatizer
Update docstrings for Lemmatizer.
Additionally modify `is_base_form` API to take `Token` instead of
individual features.
* Update docstrings
* Remove tag map values from Tagger.add_label
* Update API docs
* Fix relative link in Lemmatizer API docs
* WIP: Concept for modifying nlp object before and after init
* Make callbacks return nlp object
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Raise if callbacks don't return correct type
* Rename, update types, add after_pipeline_creation
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add a warning when a subpattern is not processed and discarded
* Normalize subpattern attribute/operator keys to upper case like
top-level attributes
* Allow adding pipeline components from source model
* Config: name -> component
* Improve error messages
* Fix error and test
* Add frozen components and exclude logic
* Remove exclude from Language.evaluate
* Init sourced components with current vocab
* Fix error codes
* consistently use upper-case IDS in token_annotation format and for get_aligned
* remove ID from to_dict (not used in from_dict either)
* fix test
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add AttributeRuler for token attribute exceptions
Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.
Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.
There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.
* Fix default name
* Update name in error message
* Extend AttributeRuler functionality
* Add option to initialize with a dict of AttributeRuler patterns
* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)
* Improve types
* Sort spans before processing
* Fix index boundaries in Span
* Refactor retokenizer to separate attrs methods
Add top-level `normalize_token_attrs` and `set_token_attrs` methods.
* Update AttributeRuler to use refactored methods
Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.
* Update spacy/pipeline/attributeruler.py
Co-authored-by: Ines Montani <ines@ines.io>
* Make API more similar to EntityRuler
* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`
* Make attrs_unnormed private
* Add test loading patterns from assets
* Revert "Fix index boundaries in Span"
This reverts commit 8f8a5c3386.
* Add Span index boundary checks (#5861)
* Add Span index boundary checks
* Return Span-specific IndexError in all cases
* Simplify and fix if/else
Co-authored-by: Ines Montani <ines@ines.io>
* remove empty gold.pyx
* add alignment unit test (to be used in docs)
* ensure that Alignment is only used on equal texts
* additional test using example.alignment
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Allow Doc.char_span to snap to token boundaries
Add a `mode` option to allow `Doc.char_span` to snap to token
boundaries. The `mode` options:
* `strict`: character offsets must match token boundaries (default, same as
before)
* `inside`: all tokens completely within the character span
* `outside`: all tokens at least partially covered by the character span
Add a new helper function `token_by_char` that returns the token
corresponding to a character position in the text. Update
`token_by_start` and `token_by_end` to use `token_by_char` for more
efficient searching.
* Remove unused import
* Rename mode to alignment_mode
Rename `mode` to `alignment_mode` with the options
`strict`/`contract`/`expand`. Any unrecognized modes are silently
converted to `strict`.
* moving syntax folder to _parser_internals
* moving nn_parser and transition_system
* move nn_parser and transition_system out of internals folder
* moving nn_parser code into transition_system file
* rename transition_system to transition_parser
* moving parser_model and _state to ml
* move _state back to internals
* The Parser now inherits from Pipe!
* small code fixes
* removing unnecessary imports
* remove link_vectors_to_models
* transition_system to internals folder
* little bit more cleanup
* newlines
* add "greedy" option for match pattern
* distinction between greedy FIRST or LONGEST
* check for proper values, throw custom warning otherwise
* unxfail one more test
* add comment in docstring
* add test that LONGEST also prefers first match if equal length
* use c arrays for more efficient processing
* rename 'greediness' to 'greedy'
Move timing into `Language.evaluate` so that only the processing is
timing, not processing + scoring. `Language.evaluate` returns
`scores["speed"]` as words per second, which should be identical to how
the speed was added to the scores previously. Also add the speed to the
evaluate CLI output.
Add and update `score` methods, provided `scores`, and default weights
`default_score_weights` for pipeline components.
* `scores` provides all top-level keys returned by `score` (merely informative, similar to `assigns`).
* `default_score_weights` provides the default weights for a default config.
* The keys from `default_score_weights` determine which values will be
shown in the `spacy train` output, so keys with weight `0.0` will be
displayed but not counted toward the overall score.
* Provide top-level score as `attr_score`
* Provide a description of the score as `attr_score_desc`
* Provide all potential scores keys, setting unused keys to `None`
* Update CLI evaluate accordingly
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
* Update POS tests to reflect current behavior (it is not entirely clear
whether the AUX/VERB mapping is indeed the desired behavior?)
* Switch to `from_config` initialization in subtoken test
* `MorphAnalysis.get` returns only the field values
* Move `_normalize_props` inside `Morphology` as
`Morphology.normalize_attrs` and simplify
* Simplify POS field detection/conversion
* Convert all non-POS features to strings
* `Morphology` returns an empty string for a missing morph to align
with the FEATS string returned for an existing morph
* Remove unused `list_to_feats`
Provide more customized normalization table warnings when training a new
model. Only suggest installing `spacy-lookups-data` if it's not already
installed and it includes a table for this language (currently checked
in a hard-coded list).
* Update with WIP
* Update with WIP
* Update with pipeline serialization
* Update types and pipe factories
* Add deep merge, tidy up and add tests
* Fix pipe creation from config
* Don't validate default configs on load
* Update spacy/language.py
Co-authored-by: Ines Montani <ines@ines.io>
* Adjust factory/component meta error
* Clean up factory args and remove defaults
* Add test for failing empty dict defaults
* Update pipeline handling and methods
* provide KB as registry function instead of as object
* small change in test to make functionality more clear
* update example script for EL configuration
* Fix typo
* Simplify test
* Simplify test
* splitting pipes.pyx into separate files
* moving default configs to each component file
* fix batch_size type
* removing default values from component constructors where possible (TODO: test 4725)
* skip instead of xfail
* Add test for config -> nlp with multiple instances
* pipeline.pipes -> pipeline.pipe
* Tidy up, document, remove kwargs
* small cleanup/generalization for Tok2VecListener
* use DEFAULT_UPSTREAM field
* revert to avoid circular imports
* Fix tests
* Replace deprecated arg
* Make model dirs require config
* fix pickling of keyword-only arguments in constructor
* WIP: clean up and integrate full config
* Add helper to handle function args more reliably
Now also includes keyword-only args
* Fix config composition and serialization
* Improve config debugging and add visual diff
* Remove unused defaults and fix type
* Remove pipeline and factories from meta
* Update spacy/default_config.cfg
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update spacy/default_config.cfg
* small UX edits
* avoid printing stack trace for debug CLI commands
* Add support for language-specific factories
* specify the section of the config which holds the model to debug
* WIP: add Language.from_config
* Update with language data refactor WIP
* Auto-format
* Add backwards-compat handling for Language.factories
* Update morphologizer.pyx
* Fix morphologizer
* Update and simplify lemmatizers
* Fix Japanese tests
* Port over tagger changes
* Fix Chinese and tests
* Update to latest Thinc
* WIP: xfail first Russian lemmatizer test
* Fix component-specific overrides
* fix nO for output layers in debug_model
* Fix default value
* Fix tests and don't pass objects in config
* Fix deep merging
* Fix lemma lookup data registry
Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed)
* Add types
* Add Vocab.from_config
* Fix typo
* Fix tests
* Make config copying more elegant
* Fix pipe analysis
* Fix lemmatizers and is_base_form
* WIP: move language defaults to config
* Fix morphology type
* Fix vocab
* Remove comment
* Update to latest Thinc
* Add morph rules to config
* Tidy up
* Remove set_morphology option from tagger factory
* Hack use_gpu
* Move [pipeline] to top-level block and make [nlp.pipeline] list
Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them
* Fix use_gpu and resume in CLI
* Auto-format
* Remove resume from config
* Fix formatting and error
* [pipeline] -> [components]
* Fix types
* Fix tagger test: requires set_morphology?
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* step_through tests: skip instead of xfail
* test_empty_doc should be fixed with new Thinc version
* remove outdated test (there are other misaligned tests now)
* xfail reason
* fix test according to french exceptions
* clarified some skipped tests
* skip ukranian test instead of xfail
* skip instead of xfail
* skip + reason instead of xfail
* removed obsolete tests referring to removed "set_frozen" functionality
* fix test 999
* remove unused AlignmentError
* remove xfail where possible, skip otherwise
* increment thinc release for empty_doc test
* Refactor Chinese tokenizer configuration
Refactor `ChineseTokenizer` configuration so that it uses a single
`segmenter` setting to choose between character segmentation, jieba, and
pkuseg.
* replace `use_jieba`, `use_pkuseg`, `require_pkuseg` with the setting
`segmenter` with the supported values: `char`, `jieba`, `pkuseg`
* make the default segmenter plain character segmentation `char` (no
additional libraries required)
* Fix Chinese serialization test to use char default
* Warn if attempting to customize other segmenter
Add a warning if `Chinese.pkuseg_update_user_dict` is called when
another segmenter is selected.
* Improve tag map initialization and updating
Generalize tag map initialization and updating so that the tag map can
be loaded correctly prior to loading a `Corpus` with `spacy debug-data`
and `spacy train`.
* normalize provided tag map as necessary
* use the same method for initializing and updating the tag map
* Replace rather than update tag map
Replace rather than update tag map when loading a custom tag map.
Updating the tag map is problematic due to the sorted list of tag names
and the fact that the tag map will contain lingering/unwanted tags from
the default tag map.
* Update CLI scripts
* Reinitialize cache after loading new tag map
Reinitialize the cache with the right size after loading a new tag map.
* Improve tag map initialization and updating
Generalize tag map initialization and updating so that a provided tag
map can be loaded correctly in the CLI.
* normalize provided tag map as necessary
* use the same method for initializing and overwriting the tag map
* Reinitialize cache after loading new tag map
Reinitialize the cache with the right size after loading a new tag map.
* update `Morphologizer.begin_training` for use with `Example`
* make init and begin_training more consistent
* add `Morphology.normalize_features` to normalize outside of
`Morphology.add`
* make sure `get_loss` doesn't create unknown labels when the POS and
morph alignments differ
Serialize `morph_rules` with the tagger alongside the `tag_map`.
Use `Morphology.load_tag_map` and `Morphology.load_morph_exceptions` to
load these settings rather than reinitializing the morphology each time
they are changed.
Update `Morphology` to load exceptions in `Morphology.__init__` and
`Morphology.load_morph_exceptions` from the format used in `MORPH_RULES`
rather than the internal format with tuple keys.
* Rename to `Morphology.exc` to `Morphology._exc` for internal use with
tuple keys
* Add `Morphology.exc` as a property that converts the internal `_exc`
back to `MORPH_RULES` format, primarily for serialization
Remove corpus-specific tag maps from the language data for languages
without custom tokenizers. For languages with custom word segmenters
that also provide tags (Japanese and Korean), the tag maps for the
custom tokenizers are kept as the default.
The default tag maps for languages without custom tokenizers are now the
default tag map from `lang/tag_map/py`, UPOS -> UPOS.
* Add morph to morphology in Doc.from_array
Add morphological analyses to morphology table in `Doc.from_array`.
* Use separate vocab in DocBin roundtrip test
* adding debug-model to print the internals for debugging purposes
* expend debug-model script with 4 stages: before, init, train, predict
* avoid enforcing to have a seed in the train script
* small fixes
* Update project CLI hashes, directories, skipping
* Improve clone success message
* Remove unused context args
* Move project-specific utils to project utils
The hashing/checksum functions may not end up being general-purpose functions and are more designed for the projects, so they shouldn't live in spacy.util
* Improve run help and add workflows
* Add note re: directory checksum speed
* Fix cloning from subdirectories and output messages
* Remove hard-coded dirs
* add keyword separator for update functions and drop unused "state"
* few more Example tests and various small fixes
* consistently return losses after update call
* eliminate unused tensors field across pipe components
* fix name
* fix arg name
* Add initial reproducibility tests
* failing test for default_text_classifier (WIP)
* track trouble to underlying tok2vec layer
* add regression test for Issue 5551
* tests go green with https://github.com/explosion/thinc/pull/359
* update test
* adding fixed seeds to HashEmbed layers, seems to fix the reproducility issue
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Make project command a submodule
* Update with WIP
* Add helper for joining commands
* Update docstrins, formatting and types
* Update assets and add support for copying local files
* Fix type
* Update success messages
* Fix get_loss for None alignments in senter
When converting the `sent_start` values back to `SentenceRecognizer`
labels, handle `None` alignments.
* Handle SENT_START as -1
Handle SENT_START as -1 (or -1 converted to uint64) by treating any
values other than 1 the same as 0 in `SentenceRecognizer.get_loss`.
* Update get_loss for senter
Update `SentenceRecognizer.get_loss` to keep it similar to `Tagger`.
* Update get_loss for morphologizer
Update `Morphologizer.get_loss` to keep it similar to `Tagger`.
* remove _convert_examples
* fix test_gold, raise TypeError if tuples are used instead of Example's
* throwing proper errors when the wrong type of objects are passed
* fix deprectated format in tests
* fix deprectated format in parser tests
* fix tests for NEL, morph, senter, tagger, textcat
* update regression tests with new Example format
* use make_doc
* more fixes to nlp.update calls
* few more small fixes for rehearse and evaluate
* only import ml_datasets if really necessary
* Use cosine loss in Cloze multitask
* Fix char_embed for gpu
* Call resume_training for base model in train CLI
* Fix bilstm_depth default in pretrain command
* Implement character-based pretraining objective
* Use chars loss in ClozeMultitask
* Add method to decode predicted characters
* Fix number characters
* Rescale gradients for mlm
* Fix char embed+vectors in ml
* Fix pipes
* Fix pretrain args
* Move get_characters_loss
* Fix import
* Fix import
* Mention characters loss option in pretrain
* Remove broken 'self attention' option in pretrain
* Revert "Remove broken 'self attention' option in pretrain"
This reverts commit 56b820f6af.
* Document 'characters' objective of pretrain
* Tell convert CLI to store user data for Doc
* Remove assert
* Add has_unknwon_spaces flag on Doc
* Do not tokenize docs with unknown spaces in Corpus
* Handle conversion of unknown spaces in Example
* Fixes
* Fixes
* Draft has_known_spaces support in DocBin
* Add test for serialize has_unknown_spaces
* Fix DocBin serialization when has_unknown_spaces
* Use serialization in test
* Add static method to Doc to allow merging of multiple docs.
* Add error description for the error that occurs if docs with different
vocabs (from different languages) are merged in Doc.from_docs().
* Add test for Doc.from_docs() implementation.
* Fix using numpy's concatenate in Doc.from_docs.
* Replace typing's type annotations in from_docs.
* Simply remove type annotations in from_docs.
* Add documentation for Doc.from_docs to api.
* Simplify from_docs, its test and the api doc for codebase consistency.
* Fix merging of Doc objects that end with whitespaces (Achieved by simply not setting the SPACY attribute on whitespace tokens). Remove two unnecessary imports of attributes.
* Add merging of user data from Doc objects in from_docs. Add user data test case to corresponding test. Add applicable warning messages.
* Fix incorrect setting of tokens idx by using concatenated spaces (again). Add test case to corresponding test.
* Add MORPH to attrs
* Update warnings calls
* Remove out-dated error from merge
* Rename space_delimiter to ensure_whitespace
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add version number to DocBin
Add a version number to DocBin for future use.
* Add POS to all attributes in DocBin
* Add morph string to strings in DocBin
* Update DocBin API
* Add string for ENT_KB_ID in DocBin
* fixes in ud_train, UX for morphs
* update pyproject with new version of thinc
* fixes in debug_data script
* cleanup of old unused error messages
* remove obsolete TempErrors
* move error messages to errors.py
* add ENT_KB_ID to default DocBin serialization
* few fixes to simple_ner
* fix tags
* Convert custom user_data to token extension format
Convert the user_data values so that they can be loaded as custom token
extensions for `inflection`, `reading_form`, `sub_tokens`, and `lemma`.
* Reset Underscore state in ja tokenizer tests
Move `Lemmatizer.is_base_form` to the language settings so that each
language can provide a language-specific method as
`LanguageDefaults.is_base_form`.
The existing English-specific `Lemmatizer.is_base_form` is moved to
`EnglishDefaults`.
* Update errors
* Remove beam for now (maybe)
Remove beam_utils
Update setup.py
Remove beam
* Remove GoldParse
WIP on removing goldparse
Get ArcEager compiling after GoldParse excise
Update setup.py
Get spacy.syntax compiling after removing GoldParse
Rename NewExample -> Example and clean up
Clean html files
Start updating tests
Update Morphologizer
* fix error numbers
* fix merge conflict
* informative error when calling to_array with wrong field
* fix error catching
* fixing language and scoring tests
* start testing get_aligned
* additional tests for new get_aligned function
* Draft create_gold_state for arc_eager oracle
* Fix import
* Fix import
* Remove TokenAnnotation code from nonproj
* fixing NER one-to-many alignment
* Fix many-to-one IOB codes
* fix test for misaligned
* attempt to fix cases with weird spaces
* fix spaces
* test_gold_biluo_different_tokenization works
* allow None as BILUO annotation
* fixed some tests + WIP roundtrip unit test
* add spaces to json output format
* minibatch utiltiy can deal with strings, docs or examples
* fix augment (needs further testing)
* various fixes in scripts - needs to be further tested
* fix test_cli
* cleanup
* correct silly typo
* add support for MORPH in to/from_array, fix morphologizer overfitting test
* fix tagger
* fix entity linker
* ensure test keeps working with non-linked entities
* pipe() takes docs, not examples
* small bug fix
* textcat bugfix
* throw informative error when running the components with the wrong type of objects
* fix parser tests to work with example (most still failing)
* fix BiluoPushDown parsing entities
* small fixes
* bugfix tok2vec
* fix renames and simple_ner labels
* various small fixes
* prevent writing dummy values like deps because that could interfer with sent_start values
* fix the fix
* implement split_sent with aligned SENT_START attribute
* test for split sentences with various alignment issues, works
* Return ArcEagerGoldParse from ArcEager
* Update parser and NER gold stuff
* Draft new GoldCorpus class
* add links to to_dict
* clean up
* fix test checking for variants
* Fix oracles
* Start updating converters
* Move converters under spacy.gold
* Move things around
* Fix naming
* Fix name
* Update converter to produce DocBin
* Update converters
* Allow DocBin to take list of Doc objects.
* Make spacy convert output docbin
* Fix import
* Fix docbin
* Fix compile in ArcEager
* Fix import
* Serialize all attrs by default
* Update converter
* Remove jsonl converter
* Add json2docs converter
* Draft Corpus class for DocBin
* Work on train script
* Update Corpus
* Update DocBin
* Allocate Doc before starting to add words
* Make doc.from_array several times faster
* Update train.py
* Fix Corpus
* Fix parser model
* Start debugging arc_eager oracle
* Update header
* Fix parser declaration
* Xfail some tests
* Skip tests that cause crashes
* Skip test causing segfault
* Remove GoldCorpus
* Update imports
* Update after removing GoldCorpus
* Fix module name of corpus
* Fix mimport
* Work on parser oracle
* Update arc_eager oracle
* Restore ArcEager.get_cost function
* Update transition system
* Update test_arc_eager_oracle
* Remove beam test
* Update test
* Unskip
* Unskip tests
* add links to to_dict
* clean up
* fix test checking for variants
* Allow DocBin to take list of Doc objects.
* Fix compile in ArcEager
* Serialize all attrs by default
Move converters under spacy.gold
Move things around
Fix naming
Fix name
Update converter to produce DocBin
Update converters
Make spacy convert output docbin
Fix import
Fix docbin
Fix import
Update converter
Remove jsonl converter
Add json2docs converter
* Allocate Doc before starting to add words
* Make doc.from_array several times faster
* Start updating converters
* Work on train script
* Draft Corpus class for DocBin
Update Corpus
Fix Corpus
* Update DocBin
Add missing strings when serializing
* Update train.py
* Fix parser model
* Start debugging arc_eager oracle
* Update header
* Fix parser declaration
* Xfail some tests
Skip tests that cause crashes
Skip test causing segfault
* Remove GoldCorpus
Update imports
Update after removing GoldCorpus
Fix module name of corpus
Fix mimport
* Work on parser oracle
Update arc_eager oracle
Restore ArcEager.get_cost function
Update transition system
* Update tests
Remove beam test
Update test
Unskip
Unskip tests
* Add get_aligned_parse method in Example
Fix Example.get_aligned_parse
* Add kwargs to Corpus.dev_dataset to match train_dataset
* Update nonproj
* Use get_aligned_parse in ArcEager
* Add another arc-eager oracle test
* Remove Example.doc property
Remove Example.doc
Remove Example.doc
Remove Example.doc
Remove Example.doc
* Update ArcEager oracle
Fix Break oracle
* Debugging
* Fix Corpus
* Fix eg.doc
* Format
* small fixes
* limit arg for Corpus
* fix test_roundtrip_docs_to_docbin
* fix test_make_orth_variants
* fix add_label test
* Update tests
* avoid writing temp dir in json2docs, fixing 4402 test
* Update test
* Add missing costs to NER oracle
* Update test
* Work on Example.get_aligned_ner method
* Clean up debugging
* Xfail tests
* Remove prints
* Remove print
* Xfail some tests
* Replace unseen labels for parser
* Update test
* Update test
* Xfail test
* Fix Corpus
* fix imports
* fix docs_to_json
* various small fixes
* cleanup
* Support gold_preproc in Corpus
* Support gold_preproc
* Pass gold_preproc setting into corpus
* Remove debugging
* Fix gold_preproc
* Fix json2docs converter
* Fix convert command
* Fix flake8
* Fix import
* fix output_dir (converted to Path by typer)
* fix var
* bugfix: update states after creating golds to avoid out of bounds indexing
* Improve efficiency of ArEager oracle
* pull merge_sent into iob2docs to avoid Doc creation for each line
* fix asserts
* bugfix excl Span.end in iob2docs
* Support max_length in Corpus
* Fix arc_eager oracle
* Filter out uannotated sentences in NER
* Remove debugging in parser
* Simplify NER alignment
* Fix conversion of NER data
* Fix NER init_gold_batch
* Tweak efficiency of precomputable affine
* Update onto-json default
* Update gold test for NER
* Fix parser test
* Update test
* Add NER data test
* Fix convert for single file
* Fix test
* Hack scorer to avoid evaluating non-nered data
* Fix handling of NER data in Example
* Output unlabelled spans from O biluo tags in iob_utils
* Fix unset variable
* Return kept examples from init_gold_batch
* Return examples from init_gold_batch
* Dont return Example from init_gold_batch
* Set spaces on gold doc after conversion
* Add test
* Fix spaces reading
* Improve NER alignment
* Improve handling of missing values in NER
* Restore the 'cutting' in parser training
* Add assertion
* Print epochs
* Restore random cuts in parser/ner training
* Implement Doc.copy
* Implement Example.copy
* Copy examples at the start of Language.update
* Don't unset example docs
* Tweak parser model slightly
* attempt to fix _guess_spaces
* _add_entities_to_doc first, so that links don't get overwritten
* fixing get_aligned_ner for one-to-many
* fix indexing into x_text
* small fix biluo_tags_from_offsets
* Add onto-ner config
* Simplify NER alignment
* Fix NER scoring for partially annotated documents
* fix indexing into x_text
* fix test_cli failing tests by ignoring spans in doc.ents with empty label
* Fix limit
* Improve NER alignment
* Fix count_train
* Remove print statement
* fix tests, we're not having nothing but None
* fix clumsy fingers
* Fix tests
* Fix doc.ents
* Remove empty docs in Corpus and improve limit
* Update config
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
* Skip special tag _SP in check for new tag map
In `Tagger.begin_training()` check for new tags aside from `_SP` in the
new tag map initialized from the provided gold tuples when determining
whether to reinitialize the morphology with the new tag map.
* Simplify _SP check
