Commit Graph

2164 Commits

Author SHA1 Message Date
Ines Montani
381258b75b
Merge pull request #6165 from explosion/feature/update-tokenizers-initialize 2020-10-01 09:49:47 +02:00
Ines Montani
a103ab5f1a Update augmenter lookups and docs 2020-09-30 23:03:47 +02:00
Ines Montani
23c63eefaf Tidy up env vars [ci skip] 2020-09-30 15:15:11 +02:00
Adriane Boyd
6b7bb32834 Refactor Chinese initialization 2020-09-30 11:46:45 +02:00
Ines Montani
34f9c26c62 Add lexeme norm defaults 2020-09-30 10:20:14 +02:00
Ines Montani
1aeef3bfbb Make corpus paths default to None and improve errors 2020-09-29 22:33:46 +02:00
Ines Montani
fa47f87924 Tidy up and auto-format 2020-09-29 21:39:28 +02:00
Ines Montani
6467a560e3 WIP: Test updating Chinese tokenizer 2020-09-29 21:10:22 +02:00
Ines Montani
78021089f9
Merge pull request #6160 from explosion/feature/prepare 2020-09-29 20:55:13 +02:00
Ines Montani
c3f8c09d7d
Merge pull request #6154 from adrianeboyd/bugfix/chinese-tokenizer-pickle 2020-09-29 20:54:59 +02:00
Ines Montani
d3c63b7965 Merge branch 'develop' into feature/prepare 2020-09-29 20:53:05 +02:00
Ines Montani
2be80379ec Fix small issues, resolve_dot_names and debug model 2020-09-29 20:38:35 +02:00
Ines Montani
7851020653 Update tests 2020-09-29 18:14:15 +02:00
Ines Montani
f2352eb701 Test with default value 2020-09-29 17:00:40 +02:00
Ines Montani
63d1598137 Simplify config use in Language.initialize 2020-09-29 16:05:48 +02:00
Ines Montani
56f8bc73ef Add more tests 2020-09-29 15:23:34 +02:00
Ines Montani
591038b1a4 Add test 2020-09-29 12:54:52 +02:00
Matthew Honnibal
e1fdf2b7c5 Upd tests 2020-09-29 12:05:38 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
Ines Montani
2e9c9e74af Fix config resolution and interpolation
TODO: auto-interpolate in Thinc if config is dict (i.e. likely subsection)
2020-09-28 15:34:00 +02:00
Ines Montani
822ea4ef61 Refactor CLI 2020-09-28 15:09:59 +02:00
Matthew Honnibal
a976da168c
Support data augmentation in Corpus (#6155)
* Support data augmentation in Corpus

* Note initial docs for data augmentation

* Add augmenter to quickstart

* Fix flake8

* Format

* Fix test

* Update spacy/tests/training/test_training.py

* Improve data augmentation arguments

* Update templates

* Move randomization out into caller

* Refactor

* Update spacy/training/augment.py

* Update spacy/tests/training/test_training.py

* Fix augment

* Fix test
2020-09-28 03:03:27 +02:00
Ines Montani
9016d23cc5 Fix exclude and add test 2020-09-27 23:34:03 +02:00
Ines Montani
7e938ed63e Update config resolution to use new Thinc 2020-09-27 22:21:31 +02:00
Adriane Boyd
8393dbedad Minor fixes
* Put `cfg` back in serialization
* Add `pickle5` to pytest conf
2020-09-27 15:15:53 +02:00
Adriane Boyd
11e195d3ed Update ChineseTokenizer
* Allow `pkuseg_model` to be set to `None` on initialization
* Don't save config within tokenizer
* Force convert pkuseg_model to use pickle protocol 4 by reencoding with
`pickle5` on serialization
* Update pkuseg serialization test
2020-09-27 14:00:18 +02:00
Ines Montani
ca3c997062 Improve CLI config validation with latest Thinc 2020-09-26 13:13:57 +02:00
Adriane Boyd
3c062b3911
Add MORPH handling to Matcher (#6107)
* Add MORPH handling to Matcher

* Add `MORPH` to `Matcher` schema
* Rename `_SetMemberPredicate` to `_SetPredicate`
* Add `ISSUBSET` and `ISSUPERSET` operators to `_SetPredicate`
  * Add special handling for normalization and conversion of morph
    values into sets
  * For other attrs, `ISSUBSET` acts like `IN` and `ISSUPERSET` only
    matches for 0 or 1 values

* Update test

* Rename to IS_SUBSET and IS_SUPERSET
2020-09-24 16:55:09 +02:00
Adriane Boyd
59340606b7
Add option to disable Matcher errors (#6125)
* Add option to disable Matcher errors

* Add option to disable Matcher errors when a doc doesn't contain a
particular type of annotation

Minor additional change:

* Update `AttributeRuler.load_from_morph_rules` to allow direct `MORPH`
values

* Rename suppress_errors to allow_missing

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Refactor annotation checks in Matcher and PhraseMatcher

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-24 16:54:39 +02:00
Sofie Van Landeghem
c7eedd3534
updates to NEL functionality (#6132)
* NEL: read sentences and ents from reference

* fiddling with sent_start annotations

* add KB serialization test

* KB write additional file with strings.json

* score_links function to calculate NEL P/R/F

* formatting

* documentation
2020-09-24 16:53:59 +02:00
Ines Montani
d0ef4a4cf5 Prevent division by zero in score weights 2020-09-24 16:42:13 +02:00
Ines Montani
58dde293ce
Merge pull request #6089 from adrianeboyd/feature/doc-ents-v3-2 2020-09-24 14:44:42 +02:00
Adriane Boyd
8eaacaae97 Refactor Doc.ents setter to use Doc.set_ents
Additional changes:

* Entity spans with missing labels are ignored
* Fix ent_kb_id setting in `Doc.set_ents`
2020-09-24 12:36:51 +02:00
Ines Montani
c6c67b606e
Merge pull request #6133 from explosion/fix/score_weights 2020-09-24 12:00:57 +02:00
Ines Montani
4bbe41f017 Fix combined scores and update test 2020-09-24 10:42:47 +02:00
Sofie Van Landeghem
c645c4e7ce
fix micro PRF for textcat (#6130)
* fix micro PRF for textcat

* small fix
2020-09-24 10:31:17 +02:00
Ines Montani
ae51f580c1 Fix handling of score_weights 2020-09-24 10:27:33 +02:00
svlandeg
b816ace4bb format 2020-09-23 17:33:13 +02:00
svlandeg
5a9fdbc8ad state_type as Literal 2020-09-23 17:32:14 +02:00
svlandeg
dd2292793f 'parser' instead of 'deps' for state_type 2020-09-23 16:53:49 +02:00
svlandeg
6c85fab316 state_type and extra_state_tokens instead of nr_feature_tokens 2020-09-23 13:35:09 +02:00
Ines Montani
60a317520a
Merge pull request #6109 from svlandeg/feature/2rename 2020-09-23 09:47:12 +02:00
Sofie Van Landeghem
86a08f819d
tok2vec.update instead of predict (#6113) 2020-09-22 21:54:52 +02:00
Adriane Boyd
e4acb28658
Fix norm in retokenizer split (#6111)
Parallel to behavior in merge, reset norm on original token in
retokenizer split.
2020-09-22 21:53:33 +02:00
Sofie Van Landeghem
e0e793be4d
fix KB IO (#6118) 2020-09-22 21:53:06 +02:00
Sofie Van Landeghem
d53c84b6d6
avoid None callback (#6100) 2020-09-22 13:54:44 +02:00
Adriane Boyd
535842e483
Merge branch 'develop' into feature/doc-ents-v3-2 2020-09-22 13:45:50 +02:00
Ines Montani
5e3b796b12 Validate section refs in debug config 2020-09-22 12:24:39 +02:00
svlandeg
e1b8090b9b few more fixes 2020-09-22 12:01:06 +02:00
svlandeg
b556a10808 rename converts in_to_out 2020-09-22 11:50:19 +02:00
Ines Montani
beb766d0a0 Add test 2020-09-22 09:15:57 +02:00
Ines Montani
69f7e52c26 Update README.md 2020-09-22 09:10:06 +02:00
Ines Montani
67fbcb3da5 Tidy up tests and docs 2020-09-21 20:43:54 +02:00
Ines Montani
a5f6ab4943
Merge pull request #6098 from adrianeboyd/feature/doc-init 2020-09-21 18:35:20 +02:00
Adriane Boyd
f212303729 Add sent_starts to Doc.__init__
Add sent_starts to `Doc.__init__`. Officially specify `is_sent_start`
values but also convert to and accept `sent_start` internally.
2020-09-21 17:59:09 +02:00
Adriane Boyd
177df15d89 Implement Doc.set_ents 2020-09-21 15:54:05 +02:00
Adriane Boyd
13fbf6556a Merge remote-tracking branch 'upstream/develop' into feature/doc-ents-v3-2 2020-09-21 14:42:04 +02:00
Adriane Boyd
ce455f30ca Fix formatting 2020-09-21 13:53:29 +02:00
Adriane Boyd
bc02e86494 Extend Doc.__init__ with additional annotation
Mostly copying from `spacy.tests.util.get_doc`, add additional kwargs to
`Doc.__init__` to initialize the most common doc/token values.
2020-09-21 13:36:24 +02:00
Ines Montani
758ead8a47 Sync overrides with CLI overrides 2020-09-21 12:50:13 +02:00
Ines Montani
5497acf49a Support config overrides via environment variables 2020-09-21 11:25:10 +02:00
Ines Montani
1114219ae3 Tidy up and auto-format 2020-09-21 10:59:07 +02:00
Adriane Boyd
eed4b785f5 Load vocab lookups tables at beginning of training
Similar to how vectors are handled, move the vocab lookups to be loaded
at the start of training rather than when the vocab is initialized,
since the vocab doesn't have access to the full config when it's
created.

The option moves from `nlp.load_vocab_data` to `training.lookups`.

Typically these tables will come from `spacy-lookups-data`, but any
`Lookups` object can be provided.

The loading from `spacy-lookups-data` is now strict, so configs for each
language should specify the exact tables required. This also makes it
easier to control whether the larger clusters and probs tables are
included.

To load `lexeme_norm` from `spacy-lookups-data`:

```
[training.lookups]
@misc = "spacy.LoadLookupsData.v1"
lang = ${nlp.lang}
tables = ["lexeme_norm"]
```
2020-09-18 15:59:16 +02:00
Ines Montani
a127fa475e
Merge pull request #6078 from svlandeg/fix/corpus 2020-09-18 14:44:21 +02:00
Adriane Boyd
a88106e852
Remove W106: HEAD and SENT_START in doc.from_array (#6086)
* Remove W106: HEAD and SENT_START in doc.from_array

This warning was hacky and being triggered too often.

* Fix test
2020-09-18 03:01:29 +02:00
Adriane Boyd
8b650f3a78 Modify setting missing and blocked entity tokens
In order to make it easier to construct `Doc` objects as training data,
modify how missing and blocked entity tokens are set to prioritize
setting `O` and missing entity tokens for training purposes over setting
blocked entity tokens.

* `Doc.ents` setter sets tokens outside entity spans to `O` regardless
of the current state of each token

* For `Doc.ents`, setting a span with a missing label sets the `ent_iob`
to missing instead of blocked

* `Doc.block_ents(spans)` marks spans as hard `O` for use with the
`EntityRecognizer`
2020-09-17 21:27:42 +02:00
svlandeg
427dbecdd6 cleanup and formatting 2020-09-17 11:48:04 +02:00
svlandeg
0c35885751 generalize corpora, dot notation for dev and train corpus 2020-09-17 11:38:59 +02:00
svlandeg
781fae678b Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-17 09:24:36 +02:00
Adriane Boyd
7e4cd7575c
Refactor Docs.is_ flags (#6044)
* Refactor Docs.is_ flags

* Add derived `Doc.has_annotation` method

  * `Doc.has_annotation(attr)` returns `True` for partial annotation

  * `Doc.has_annotation(attr, require_complete=True)` returns `True` for
    complete annotation

* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`

* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.

Notes on `Doc.has_annotation`:

* `HEAD` is converted to `DEP` because heads don't have an unset state

* Accept `IS_SENT_START` as a synonym of `SENT_START`

Additional changes:

* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`

* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`

* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`

* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`

* Fix call to set_children_form_heads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-17 00:14:01 +02:00
Adriane Boyd
a119667a36
Clean up spacy.tokens (#6046)
* Clean up spacy.tokens

* Update `set_children_from_heads`:
  * Don't check `dep` when setting lr_* or sentence starts
  * Set all non-sentence starts to `False`

* Use `set_children_from_heads` in `Token.head` setter
  * Reduce similar/duplicate code (admittedly adds a bit of overhead)
  * Update sentence starts consistently

* Remove unused `Doc.set_parse`

* Minor changes:
  * Declare cython variables (to avoid cython warnings)
  * Clean up imports

* Modify set_children_from_heads to set token range

Modify `set_children_from_heads` so that it adjust tokens within a
specified range rather then the whole document.

Modify the `Token.head` setter to adjust only the tokens affected by the
new head assignment.
2020-09-16 20:32:38 +02:00
Adriane Boyd
f3db3f6fe0
Add vectors option to CharacterEmbed (#6069)
* Add vectors option to CharacterEmbed

* Update spacy/pipeline/morphologizer.pyx

* Adjust default morphologizer config

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-16 17:45:04 +02:00
Adriane Boyd
87c329c711
Set rule-based lemmatizers as default (#6076)
For languages without provided models and with lemmatizer rules in
`spacy-lookups-data`, make the rule-based lemmatizer the default:
Bengali, Persian, Norwegian, Swedish
2020-09-16 17:37:29 +02:00
svlandeg
1040e250d8 actual commit with test for custom readers with ml_datasets >= 0.2 2020-09-16 16:41:28 +02:00
svlandeg
0d1392340f Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-15 23:17:08 +02:00
svlandeg
f420aa1138 use e.value to get to the ExceptionInfo value 2020-09-15 22:30:09 +02:00
svlandeg
51fa929f47 rewrite train_corpus to corpus.train in config 2020-09-15 21:58:04 +02:00
svlandeg
bd87e8686e move tests to correct subdir 2020-09-15 21:40:38 +02:00
Ines Montani
aaf01689a1 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-09-15 14:24:42 +02:00
Ines Montani
91a6637f74 Remove extra pipe config values before merging 2020-09-15 14:24:17 +02:00
Ines Montani
d3d7f92f05 Fix lang check and error handling in Language.from_config 2020-09-15 14:24:06 +02:00
Ines Montani
2ed6e2a218 Auto-format 2020-09-15 14:20:04 +02:00
Ines Montani
253ba5ef14 Raise for bad Vocab values 2020-09-15 13:25:34 +02:00
Ines Montani
7dfc4bc062 Allow overriding meta from spacy.blank 2020-09-15 11:12:12 +02:00
Matthew Honnibal
e8378b57bc Fix test 2020-09-14 21:21:13 +02:00
Sofie Van Landeghem
3216a33149
positive_label config for textcat (#6062)
* hook up positive_label in textcat

* unit tests

* documentation

* formatting

* tests

* fix typo

* move verify_config to after begin_training

* revert accidential commit
2020-09-14 17:08:00 +02:00
Sofie Van Landeghem
744df9814a
define threshold for scoring textcat in TextCat config (#6055)
* define threshold for scoring textcat in TextCat config

* fix unit test and documentation
2020-09-13 14:15:52 +02:00
Adriane Boyd
ab270364f1
Modify Token.morph to enable unsetting (#6043)
Modify `Token.morph` property so that `Token.c.morph` can be reset back
to an internal value of `0`. Allow setting `Token.morph` from a hash as
long as the morph string is already in the `StringStore`, setting it
indirectly through `Token.morph_` so that the value is added to the
morphology. If the hash is not in the `StringStore`, raise an error.
2020-09-13 14:06:07 +02:00
Adriane Boyd
c7bd631b5f
Fix token.idx for special cases with affixes (#6035) 2020-09-13 14:05:36 +02:00
Matthew Honnibal
54c40223a1
Improve v3 pretrain command (#6040)
* Starts to run

* Update pretrain script

* Update corpus

* Update pretrain schema

* Remove outdated test

* Make JsonlTexts produce Example objects.
2020-09-13 14:05:05 +02:00
Ines Montani
febb99916d Tidy up and auto-format [ci skip] 2020-09-13 10:55:36 +02:00
svlandeg
115147804a string_to_list to parse comma-separated string into a list 2020-09-12 14:43:22 +02:00
Sofie Van Landeghem
cb66ea7400
Remove simple_ner code (#6041)
* remove simple_ner code

* remove unused _biluo and _iob files
2020-09-09 16:11:27 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042)
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
2020-09-09 10:31:03 +02:00
Sofie Van Landeghem
60f22e1800
Pipe API (#6034)
* ensure Language passes on valid examples for initialization

* fix tagger model initialization

* check for valid get_examples across components

* assume labels were added before begin_training

* fix senter initialization

* fix morphologizer initialization

* use methods to check arguments

* test textcat init, requires thinc>=8.0.0a31

* fix tok2vec init

* fix entity linker init

* use islice

* fix simple NER

* cleanup debug model

* fix assert statements

* fix tests

* throw error when adding a label if the output layer can't be resized anymore

* fix test

* add failing test for simple_ner

* UX improvements

* morphologizer UX

* assume begin_training gets a representative set and processes the labels

* remove assumptions for output of untrained NER model

* restore test for original purpose
2020-09-08 22:44:25 +02:00
Ines Montani
f174c7b1f3 Merge branch 'develop' into pr/6018 2020-09-04 15:54:49 +02:00
Ines Montani
d7cc2ee72d Fix tests 2020-09-04 14:05:55 +02:00
Ines Montani
90043a6f9b Tidy up and auto-format 2020-09-04 13:42:33 +02:00
Ines Montani
df0b68f60e Remove unicode declarations and update language data 2020-09-04 13:19:16 +02:00
Ines Montani
864a697e63 Merge branch 'develop' into master-tmp 2020-09-04 13:15:36 +02:00
Adriane Boyd
b927893309
Merge branch 'develop' into feature/dependency-matcher-v3 2020-09-04 13:03:30 +02:00
Ines Montani
5afe6447cd registry.assets -> registry.misc 2020-09-03 17:31:14 +02:00
Ines Montani
c063e55eb7 Add prefix to batchers 2020-09-03 17:30:41 +02:00
Yohei Tamura
5af432e0f2
fix for empty string (#5936) 2020-09-03 10:09:03 +02:00
Adriane Boyd
8b5594df86 Remove near-duplicate test 2020-09-02 20:32:01 +02:00
Adriane Boyd
960d9cfadc Officially support DependencyMatcher
Add official support for the `DependencyMatcher`. Redesign the pattern
specification. Fix and extend operator implementations. Update API docs
and add usage docs.

Patterns
--------

Refactor pattern structure to:

```
{
  "LEFT_ID": str,
  "REL_OP": str,
  "RIGHT_ID": str,
  "RIGHT_ATTRS": dict,
}
```

The first node contains only `RIGHT_ID` and `RIGHT_ATTRS` and all
subsequent nodes contain all four keys.

New operators
-------------

Because of the way patterns are constructed from left to right, it's
helpful to have `follows` operators along with `precedes` operators. Add
operators for simple precedes / follows alongside immediate precedes /
follows.

* `.*`: precedes
* `;`: immediately follows
* `;*`: follows

Operator fixes
--------------

* `<` and `<<` do not include the node itself
* Fix reversed order for all operators involving linear precedence (`.`,
  all sibling operators)
* Linear precedence operators do not match nodes outside the same parse

Additional fixes
----------------

* Use v3 Matcher API
* Support `get` and `remove`
* Support pickling
2020-09-02 17:45:29 +02:00
Sofie Van Landeghem
eb56377799
Fix overfitting test (#6011)
* remove unused MORPH_RULES

* fix textcat architecture in overfitting test
2020-09-02 13:07:41 +02:00
Sofie Van Landeghem
f7a25d69f7
Bugfix in merge_entities (#6005)
* failing test

* bugfix
2020-09-01 21:57:52 +02:00
Adriane Boyd
9130094199
Prevent Tagger model init with 0 labels (#5984)
* Prevent Tagger model init with 0 labels

Raise an error before trying to initialize a tagger model with 0 labels.

* Add dummy tagger label for test

* Remove tagless tagger model initializiation

* Fix error number after merge

* Add dummy tagger label to test

* Fix formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-31 21:24:33 +02:00
Ines Montani
add9de5487 Deprecate (Phrase)Matcher.pipe 2020-08-31 17:01:24 +02:00
Ines Montani
6340d1c63d Add as_spans to Matcher/PhraseMatcher 2020-08-31 14:53:22 +02:00
Sofie Van Landeghem
ec14744ee4
Rename Transformer listener (#6001)
* rename to spacy-transformers.TransformerListener

* add some more tok2vec tests

* use select_pipes

* fix docs - annotation setter was not changed in the end
2020-08-31 12:41:39 +02:00
Adriane Boyd
216efaf5f5 Restrict tokenizer exceptions to ORTH and NORM 2020-08-31 09:55:01 +02:00
Ines Montani
45f46a5c85
Merge pull request #5993 from explosion/feature/disabled-components 2020-08-29 15:58:41 +02:00
Ines Montani
34146750d4 Use frozen list with custom errors
We don't want to break backwards compatibility too much but we also want to provide the best possible UX
2020-08-29 15:20:11 +02:00
Ines Montani
744f432420
Merge pull request #5994 from explosion/feature/idempotent-component-decorator 2020-08-29 13:17:13 +02:00
Ines Montani
2bc31e15c9 Tidy up and auto-format [ci skip] 2020-08-29 13:01:10 +02:00
Ines Montani
15d73f4dc3 Make user-facing Language.disabled return list
More consistent with all the other properties
2020-08-29 12:08:33 +02:00
Ines Montani
0687d7148e Rename user-facing API 2020-08-28 21:04:02 +02:00
Adriane Boyd
0104bd1600 Sort the AttributeRuler matches by rule order
Sort the returned matches by rule order (the `match_id`) so that the
rules are applied in the order they were added. This is necessary, for
instance, if the `AttributeRuler` is used for the tag map and later
rules require POS tags.
2020-08-28 21:01:06 +02:00
Adriane Boyd
8674b17651 Serialize AttributeRuler.patterns
Serialize `AttributeRuler.patterns` instead of the individual lists to
simplify the serialized and so that patterns are reloaded exactly as
they were originally provided (preserving `_attrs_unnormed`).
2020-08-28 20:44:45 +02:00
Ines Montani
10da74382f Raise if disabled components are removed before DisabledPipes.restore 2020-08-28 20:35:26 +02:00
Ines Montani
cad988da7f Allow component decorators to re-run with same function 2020-08-28 16:27:22 +02:00
Ines Montani
3ce5be4b76 Allow loaded but disabled components 2020-08-28 15:20:14 +02:00
Ines Montani
9c4049b57f
Merge pull request #5986 from explosion/fix/language-config-interpolate-disk-bytes 2020-08-28 15:03:52 +02:00
Ines Montani
adc050cdc5 Fix code style in test [ci skip] 2020-08-28 15:03:21 +02:00
Ines Montani
a51b4f3a19 Merge branch 'develop' into fix/language-config-interpolate-disk-bytes 2020-08-28 13:21:17 +02:00
svlandeg
9a8255ffd5 two tests because of different exit type 2020-08-28 10:50:26 +02:00
svlandeg
73baaf330a update error type 2020-08-28 10:46:21 +02:00
Ines Montani
daac8ebacd Don't interpolate config on Language deserialization 2020-08-27 16:44:36 +02:00
Adriane Boyd
90d88729e0
Add AttributeRuler.score (#5963)
* Add AttributeRuler.score

Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.

Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.

* Update docs
2020-08-26 15:39:30 +02:00
Hiroshi Matsuda
332803eda9
fix ja leading spaces (#5969)
* change condition for space after

* add NAUGHTY_STRINGS test example
2020-08-25 14:16:24 +02:00
Ines Montani
dd84577a98 Update CLI utils, project.yml schema and add test 2020-08-25 11:54:53 +02:00
Shashank
450720aca2
Added support for Sanskrit language (#5956)
* Added support for Sanskrit language

* Added tests for lexical attribute like_num
2020-08-25 10:56:29 +02:00
Ines Montani
e12b03358b
Support removing extra values in fill-config (#5966)
* Support removing extra values in fill-config

* Fix test
2020-08-24 22:53:47 +02:00
Ines Montani
0e7f99da58
Fix handling of optional [pretraining] block (#5954)
* Fix handling of optional [pretraining] block

* Remote pretraining from default config

* Fix test

* Add schema option for empty pretrain block
2020-08-24 15:56:03 +02:00
idoshr
b10c7bc56e
Hebrew like num (#5952)
* Update stop_words.py

Hebrew STOP WORDS

* Update stop_words.py

* contributor

* contributor

* add some common domain extentions
support human number 1K/1M....

* support human number 1K/1M....

* hebrew number tokenize
1K/1M implement in EN

* test human tokenize fix

* test

* heb like num
revert human number change

* heb like num
2020-08-24 14:30:05 +02:00
Matthew Honnibal
160a855246 Format 2020-08-23 21:15:12 +02:00
Matthew Honnibal
e559867605
Allow spacy project to push and pull to/from remote storage (#5949)
* Add utils for working with remote storage

* WIP add remote_cache for project

* WIP add push and pull commands

* Use pathy in remote_cache

* Updarte util

* Update remote_cache

* Update util

* Update project assets

* Update pull script

* Update push script

* Fix type annotation in util

* Work on remote storage

* Remove site and env hash

* Fix imports

* Fix type annotation

* Require pathy

* Require pathy

* Fix import

* Add a util to handle project variable substitution

* Import push and pull commands

* Fix pull command

* Fix push command

* Fix tarfile in remote_storage

* Improve printing

* Fiddle with status messages

* Set version to v3.0.0a9

* Draft docs for spacy project remote storages

* Update docs [ci skip]

* Use Thinc config to simplify and unify template variables

* Auto-format

* Don't import Pathy globally for now

Causes slow and annoying Google Cloud warning

* Tidy up test

* Tidy up and update tests

* Update to latest Thinc

* Update docs

* variables -> vars

* Update docs [ci skip]

* Update docs [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-23 18:32:09 +02:00
Sofie Van Landeghem
56eabcb2f2
Adding num_like test for Czech (#5946)
* Create lex_attrs.py

Hello,

I am missing a CZECH language in SpaCy. So I would like to help to push it a little. This file is base on others lex_attrs.py files just with translation to Czech.

* Update __init__.py

Updated for use with new Czech Lex_attrs file

* Update stop_words.py

* Create test_text.py

* add like_num testing for czech

Co-authored-by: holubvl3 <47881982+holubvl3@users.noreply.github.com>
Co-authored-by: holubvl3 <vilemrousi@gmail.com>
Co-authored-by: Vladimír Holubec <vholubec@arcdata.cz>
2020-08-21 17:06:33 +02:00
svlandeg
af36d77d01 fix typo in docstring 2020-08-21 15:56:03 +02:00
Ines Montani
e60442d83a Adjust label casing in displaCy NER visualizer (resolves #4866)
- Accept any case for label names in ents and colors option, even if actual predicted label uses different casing
- Don't text-transform: uppercase visually, if it's important to users that the label is represented as-is in the UI
2020-08-21 11:51:31 +02:00
Ines Montani
6ad59d59fe Merge branch 'develop' of https://github.com/explosion/spaCy into develop [ci skip] 2020-08-20 11:20:58 +02:00
Sofie Van Landeghem
071c09ff35
add coding (#5942) 2020-08-20 11:08:38 +02:00
Ines Montani
e2f2ef3a5a Update init config and recommendations
- As much as I dislike YAML, it seemed like a better format here because it allows us to add comments if we want to explain the different recommendations
- Don't include the generated JS in the repo by default and build it on the fly when running or deploying the site. This ensures it's always up to date.
- Simplify jinja_to_js script and use fewer dependencies
2020-08-19 13:33:15 +02:00
Sofie Van Landeghem
358cbb21e3
Define candidate generator in EL config (#5876)
* candidate generator as separate part of EL config

* update comment

* ent instead of str as input for candidate generation

* Span instead of str: correct type indication

* fix types

* unit test to create new candidate generator

* fix replace_pipe argument passing

* move error message, general cleanup

* add vocab back to KB constructor

* provide KB as callable from Vocab arg

* rename to kb_loader, fix KB serialization as part of the EL pipe

* fix typo

* reformatting

* cleanup

* fix comment

* fix wrongly duplicated code from merge conflict

* rename dump to to_disk

* from_disk instead of load_bulk

* update test after recent removal of set_morphology in tagger

* remove old doc
2020-08-18 16:10:36 +02:00
Ines Montani
3ae5e02f4f Update docs, types and API consistency 2020-08-17 16:45:24 +02:00
Ines Montani
45f13cbf64
Merge pull request #5916 from explosion/feature/new-thinc-config 2020-08-16 15:24:12 +02:00
Ines Montani
a570c304df Update quickstart, template and docs 2020-08-15 14:50:29 +02:00
Ines Montani
3272a63430
Merge pull request #5920 from explosion/fix/logging-warning-various 2020-08-15 14:41:15 +02:00
Matthew Honnibal
9ebf39fb5f Relax test 2020-08-14 16:31:09 +02:00
Ines Montani
8128e5eb35 Replace lexeme_norm warning with logging 2020-08-14 15:00:52 +02:00
Ines Montani
88b0a96801 Update for new Thinc and adjust config 2020-08-13 17:38:30 +02:00
Ines Montani
950832f087
Tidy up pipes (#5906)
* Tidy up pipes

* Fix init, defaults and raise custom errors

* Update docs

* Update docs [ci skip]

* Apply suggestions from code review

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Tidy up error handling and validation, fix consistency

* Simplify get_examples check

* Remove unused import [ci skip]

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-11 23:29:31 +02:00
Ines Montani
c099f6eece Add Token.lex 2020-08-10 16:43:52 +02:00
Ines Montani
3eaeb73342 Tidy up and auto-format 2020-08-09 22:36:23 +02:00
Ines Montani
8d2baa153d Update tokenizer docs and add test 2020-08-09 15:24:01 +02:00
Matthew Honnibal
8a13f510d6 Update tests 2020-08-09 15:01:16 +02:00
Ines Montani
fe29ceec9e Merge branch 'develop' into docs/model-docstrings 2020-08-07 18:42:01 +02:00
Ines Montani
3a193eb8f1 Fix imports, types and default configs 2020-08-07 18:40:54 +02:00
Adriane Boyd
e962784531
Add Lemmatizer and simplify related components (#5848)
* Add Lemmatizer and simplify related components

* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests

Differences:

* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map

* Fix test

* Initial fix for Lemmatizer config/serialization

* Adjust init test to be more generic

* Adjust init test to force empty Lookups

* Add simple cache to rule-based lemmatizer

* Convert language-specific lemmatizers

Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.

* Fix French and Polish lemmatizers

* Remove outdated UPOS conversions

* Update Russian lemmatizer init in tests

* Add minimal init/run tests for custom lemmatizers

* Add option to overwrite existing lemmas

* Update mode setting, lookup loading, and caching

* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods

* Implement strict when lang is not found in lookups

* Fix tables/lookups in make_lemmatizer

* Reallow provided lookups and allow for stricter checks

* Add lookups asset to all Lemmatizer pipe tests

* Rename lookups in lemmatizer init test

* Clean up merge

* Refactor lookup table loading

* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.

Additional slight refactor of lookups:

* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`

* Move registry assets into test methods

* Refactor lookups tables config

Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.

* Add pipe and score to lemmatizer

* Simplify Tagger.score

* Add missing import

* Clean up imports and auto-format

* Remove unused kwarg

* Tidy up and auto-format

* Update docstrings for Lemmatizer

Update docstrings for Lemmatizer.

Additionally modify `is_base_form` API to take `Token` instead of
individual features.

* Update docstrings

* Remove tag map values from Tagger.add_label

* Update API docs

* Fix relative link in Lemmatizer API docs
2020-08-07 15:27:13 +02:00
Ines Montani
ef2c67cca5
Add DocBin to/from_disk methods and update docs (#5892)
* Add DocBin to/from_disk methods and update docs

* Use DocBin.from_disk in Corpus
2020-08-07 14:30:59 +02:00
Matthew Honnibal
d4525816ef
Be less choosy about reporting textcat scores (#5879)
* Set textcat scores more consistently

* Refactor textcat scores

* Fixes to scorer

* Add comments

* Add threshold

* Rename just 'f' to micro_f in textcat scorer

* Fix textcat score for two-class

* Fix syntax

* Fix textcat score

* Fix docstring
2020-08-06 16:24:13 +02:00
Adriane Boyd
5e683a6e46
Fix return values for per feat score (#5885)
* Fix return values for per feat score

Convert `PRFScore` to dict as other per type scores.

* Update tests accordingly
2020-08-06 15:14:47 +02:00
Ines Montani
5cc0d89fad
Simplify config overrides in CLI and deserialization (#5880) 2020-08-05 23:35:09 +02:00
Ines Montani
823e533dc1
Add config callbacks for modifying nlp object before and after init (#5866)
* WIP: Concept for modifying nlp object before and after init

* Make callbacks return nlp object

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Raise if callbacks don't return correct type

* Rename, update types, add after_pipeline_creation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-05 19:47:54 +02:00
Ines Montani
e68459296d Tidy up and auto-format 2020-08-05 16:00:59 +02:00
Adriane Boyd
4193402c47
Add warning when Matcher subpattern is discarded (#5873)
* Add a warning when a subpattern is not processed and discarded

* Normalize subpattern attribute/operator keys to upper case like
top-level attributes
2020-08-05 14:56:14 +02:00
Adriane Boyd
af125875cf
Update SimpleNER (#5878)
* Fix `get_loss` to use NER annotation
* Add labels as part of cfg
* Add simple overfitting test
2020-08-05 14:43:29 +02:00
Sofie Van Landeghem
b88c5c701a
Bugfix in nlp.replace_pipe (#5875)
* bugfix and unit test

* merge two conditions
2020-08-05 09:30:58 +02:00
Ines Montani
b795f02fbd
Allow adding pipeline components from source model (#5857)
* Allow adding pipeline components from source model

* Config: name -> component

* Improve error messages

* Fix error and test

* Add frozen components and exclude logic

* Remove exclude from Language.evaluate

* Init sourced components with current vocab

* Fix error codes
2020-08-04 23:39:19 +02:00
Sofie Van Landeghem
34873c4911
Example Dict format consistency (#5858)
* consistently use upper-case IDS in token_annotation format and for get_aligned

* remove ID from to_dict (not used in from_dict either)

* fix test

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 22:22:26 +02:00
Adriane Boyd
fa79a0db9f
Add AttributeRuler for token attribute exceptions (#5842)
* Add AttributeRuler for token attribute exceptions

Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.

Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.

There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.

* Fix default name

* Update name in error message

* Extend AttributeRuler functionality

* Add option to initialize with a dict of AttributeRuler patterns

* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)

* Improve types

* Sort spans before processing

* Fix index boundaries in Span

* Refactor retokenizer to separate attrs methods

Add top-level `normalize_token_attrs` and `set_token_attrs` methods.

* Update AttributeRuler to use refactored methods

Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.

* Update spacy/pipeline/attributeruler.py

Co-authored-by: Ines Montani <ines@ines.io>

* Make API more similar to EntityRuler

* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`

* Make attrs_unnormed private

* Add test loading patterns from assets

* Revert "Fix index boundaries in Span"

This reverts commit 8f8a5c3386.

* Add Span index boundary checks (#5861)

* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 17:02:39 +02:00
Sofie Van Landeghem
492d1ec5de
Prevent alignment when texts don't match (#5867)
* remove empty gold.pyx

* add alignment unit test (to be used in docs)

* ensure that Alignment is only used on equal texts

* additional test using example.alignment

* formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 16:29:18 +02:00
Matthew Honnibal
ecb3c4e8f4
Create corpus iterator and batcher from registry during training (#5865)
* Move batchers into their own module (and registry)

* Update CLI

* Update Corpus and batcher

* Update tests

* Update one config

* Merge 'evaluation' block back under [training]

* Import batchers in gold __init__

* Fix batchers

* Update config

* Update schema

* Update util

* Don't assume train and dev are actually paths

* Update onto-joint config

* Fix missing import

* Format

* Format

* Update spacy/gold/corpus.py

Co-authored-by: Ines Montani <ines@ines.io>

* Fix name

* Update default config

* Fix get_length option in batchers

* Update test

* Add comment

* Pass path into Corpus

* Update docstring

* Update schema and configs

* Update config

* Fix test

* Fix paths

* Fix print

* Fix create_train_batches

* [training.read_train] -> [training.train_corpus]

* Update onto-joint config

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 15:09:37 +02:00
Sofie Van Landeghem
82347110f5
Default empty KB in EL component (#5872)
* EL field documentation

* documentation consistent with docs

* default empty KB, initialize vocab separately

* formatting

* add test for changing the default entity vector length

* update comment
2020-08-04 14:34:09 +02:00
Adriane Boyd
b7e3018d97
Recalculate alignment if tokenization differs (#5868)
* Recalculate alignment if tokenization differs

* Refactor cached alignment data
2020-08-04 14:31:32 +02:00
Adriane Boyd
c62fd878a3
Allow Doc.char_span to snap to token boundaries (#5849)
* Allow Doc.char_span to snap to token boundaries

Add a `mode` option to allow `Doc.char_span` to snap to token
boundaries. The `mode` options:

* `strict`: character offsets must match token boundaries (default, same as
before)
* `inside`: all tokens completely within the character span
* `outside`: all tokens at least partially covered by the character span

Add a new helper function `token_by_char` that returns the token
corresponding to a character position in the text. Update
`token_by_start` and `token_by_end` to use `token_by_char` for more
efficient searching.

* Remove unused import

* Rename mode to alignment_mode

Rename `mode` to `alignment_mode` with the options
`strict`/`contract`/`expand`. Any unrecognized modes are silently
converted to `strict`.
2020-08-04 13:36:32 +02:00
Adriane Boyd
b841248589
Add Span index boundary checks (#5861)
* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else
2020-08-04 13:35:25 +02:00
Ines Montani
b40f44419b Simplify pipe analysis
- remove unused code
- don't print by default
- integrate attrs info into analysis output
2020-08-01 13:40:06 +02:00
Ines Montani
b68c53858c Remove global 2020-07-31 18:37:58 +02:00
Ines Montani
30a76fcf6f Integrate and simplify pipe analysis 2020-07-31 18:34:35 +02:00
Adriane Boyd
ac14ce7c30
Prefer earlier spans in EntityRuler (#5843)
Similar to #4414, update the sorting in EntityRuler to prefer the first
span in overlapping spans.
2020-07-31 16:09:32 +02:00
Adriane Boyd
9b509aa87f Move Language.evaluate scorer config to new arg
Move `Language.evaluate` scorer config from `component_cfg` to separate
argument `scorer_cfg`.
2020-07-31 11:05:16 +02:00
Sofie Van Landeghem
ca491722ad
The Parser is now a Pipe (2) (#5844)
* moving syntax folder to _parser_internals

* moving nn_parser and transition_system

* move nn_parser and transition_system out of internals folder

* moving nn_parser code into transition_system file

* rename transition_system to transition_parser

* moving parser_model and _state to ml

* move _state back to internals

* The Parser now inherits from Pipe!

* small code fixes

* removing unnecessary imports

* remove link_vectors_to_models

* transition_system to internals folder

* little bit more cleanup

* newlines
2020-07-30 23:30:54 +02:00
Rahul Gupta
f76fae0e8d
English: adds ordinal numbers (#5830) 2020-07-29 20:22:47 +02:00
Gustavo Zadrozny Leyendecker
90b958fd01
Fix on EntityRendered to support break lines (after last entity) (closes #5838) 2020-07-29 18:48:39 +02:00
Matthew Honnibal
f0cf4a2dca Update tests 2020-07-29 14:01:14 +02:00
Matthew Honnibal
c7d1ece3eb Update tests 2020-07-29 14:01:13 +02:00
Matthew Honnibal
20e9098e3f Update tests 2020-07-29 14:01:12 +02:00
Matthew Honnibal
1784c95827 Clean up link_vectors_to_models unused stuff 2020-07-29 14:01:11 +02:00
Sofie Van Landeghem
40c995b1be
Option for returning only greedy matches (#5771)
* add "greedy" option for match pattern

* distinction between greedy FIRST or LONGEST

* check for proper values, throw custom warning otherwise

* unxfail one more test

* add comment in docstring

* add test that LONGEST also prefers first match if equal length

* use c arrays for more efficient processing

* rename 'greediness' to 'greedy'
2020-07-29 11:04:43 +02:00
Ines Montani
b83ead5bf5
Merge pull request #5824 from svlandeg/fix/textcat-v3 2020-07-28 15:04:25 +02:00
Ines Montani
06a97a8766 Support --opt=value format in CLI config overrides 2020-07-28 13:43:15 +02:00
Ines Montani
0094cb0d04 Remove scores list from config and document 2020-07-28 11:22:24 +02:00
graue70
b97dbab998
Fix typo in unit tests (#5823) 2020-07-27 20:18:48 +02:00
Ines Montani
894e20c466 Merge branch 'develop' into feature/component-scores 2020-07-27 18:14:39 +02:00
svlandeg
85b2dcfd67 cleanup 2020-07-27 17:54:44 +02:00
svlandeg
61068e0fb1 util function dot_to_object and corresponding unit test 2020-07-27 17:50:12 +02:00
Adriane Boyd
8bb0507777 Add and update score methods and score weights
Add and update `score` methods, provided `scores`, and default weights
`default_score_weights` for pipeline components.

* `scores` provides all top-level keys returned by `score` (merely informative, similar to `assigns`).
* `default_score_weights` provides the default weights for a default config.
* The keys from `default_score_weights` determine which values will be
shown in the `spacy train` output, so keys with weight `0.0` will be
displayed but not counted toward the overall score.
2020-07-27 14:44:53 +02:00
Adriane Boyd
baf19fd652 Update cats scoring to provide overall score
* Provide top-level score as `attr_score`
* Provide a description of the score as `attr_score_desc`
* Provide all potential scores keys, setting unused keys to `None`
* Update CLI evaluate accordingly
2020-07-27 12:26:10 +02:00
Ines Montani
ed61fb10fc Rename default textcat arch to TextCatEnsemble 2020-07-26 15:11:43 +02:00
Ines Montani
4060c2d5a6 Fix test 2020-07-26 13:40:19 +02:00
Ines Montani
2470486543 Allow pipeline components to set default scores and weights 2020-07-26 13:18:43 +02:00
Ines Montani
e92df281ce Tidy up, autoformat, add types 2020-07-25 15:01:15 +02:00
Ines Montani
cdbd6ba912
Merge pull request #5798 from explosion/feature/language-data-config 2020-07-25 13:34:49 +02:00
Adriane Boyd
2bcceb80c4
Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility

Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.

* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
  * with a provided pipeline containing components to be scored
  * with a default pipeline containing the built-in statistical
    components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline

Significant differences:

* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100

* Add kwargs to Morphologizer.evaluate

* Create generalized scoring methods in Scorer

* Generalized static scoring methods are added to `Scorer`
  * Methods require an attribute (either on Token or Doc) that is
used to key the returned scores

Naming differences:

* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`

Scoring differences:

* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)

* Simplify / extend hasattr check for eval method

* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring

* Reset Example alignment if docs are set

Reset the Example alignment if either doc is set in case the
tokenization has changed.

* Add PRF tokenization scoring for tokens as spans

Add PRF scores for tokens as character spans. The scores are:

* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))

* Add docstring to Scorer.score_tokenization

* Rename component.evaluate() to component.score()

* Update Scorer API docs

* Update scoring for positive_label in textcat

* Fix TextCategorizer.score kwargs

* Update Language.evaluate docs

* Update score names in default config
2020-07-25 12:53:02 +02:00
Ines Montani
b9aaa4e457 Improve vocab data integration and warning 2020-07-25 11:51:30 +02:00
Ines Montani
38f6ea7a78 Simplify language data and revert detailed configs 2020-07-24 14:50:26 +02:00
Adriane Boyd
656574a01a
Update Japanese tests (#5807)
* Update POS tests to reflect current behavior (it is not entirely clear
whether the AUX/VERB mapping is indeed the desired behavior?)
* Switch to `from_config` initialization in subtoken test
2020-07-24 12:45:14 +02:00
Adriane Boyd
fdb8815ef5
Minor refactor for Morphology and MorphAnalysis (#5804)
* `MorphAnalysis.get` returns only the field values
* Move `_normalize_props` inside `Morphology` as
`Morphology.normalize_attrs` and simplify
  * Simplify POS field detection/conversion
  * Convert all non-POS features to strings
* `Morphology` returns an empty string for a missing morph to align
with the FEATS string returned for an existing morph
* Remove unused `list_to_feats`
2020-07-24 09:28:06 +02:00
Ines Montani
a624ae0675 Remove POS, TAG and LEMMA from tokenizer exceptions 2020-07-22 23:09:01 +02:00
Ines Montani
14d7d46f89 Merge branch 'develop' into feature/language-data-config 2020-07-22 22:18:53 +02:00
Ines Montani
b507f61629 Tidy up and move noun_chunks, token_match, url_match 2020-07-22 22:18:46 +02:00
Ines Montani
d0c6d1efc5
@factories -> factory (#5801) 2020-07-22 17:29:31 +02:00
Ines Montani
945f795a3e WIP: move more language data to config 2020-07-22 15:59:37 +02:00
Adriane Boyd
b84fd70cc3
Fix exceptions for Morphology.__reduce__ (#5792)
Pickle exceptions in the MORPH_RULES format instead of the internal
format after the recent `Morphology.__init__` changes.
2020-07-22 15:00:25 +02:00
Ines Montani
43b960c01b
Refactor pipeline components, config and language data (#5759)
* Update with WIP

* Update with WIP

* Update with pipeline serialization

* Update types and pipe factories

* Add deep merge, tidy up and add tests

* Fix pipe creation from config

* Don't validate default configs on load

* Update spacy/language.py

Co-authored-by: Ines Montani <ines@ines.io>

* Adjust factory/component meta error

* Clean up factory args and remove defaults

* Add test for failing empty dict defaults

* Update pipeline handling and methods

* provide KB as registry function instead of as object

* small change in test to make functionality more clear

* update example script for EL configuration

* Fix typo

* Simplify test

* Simplify test

* splitting pipes.pyx into separate files

* moving default configs to each component file

* fix batch_size type

* removing default values from component constructors where possible (TODO: test 4725)

* skip instead of xfail

* Add test for config -> nlp with multiple instances

* pipeline.pipes -> pipeline.pipe

* Tidy up, document, remove kwargs

* small cleanup/generalization for Tok2VecListener

* use DEFAULT_UPSTREAM field

* revert to avoid circular imports

* Fix tests

* Replace deprecated arg

* Make model dirs require config

* fix pickling of keyword-only arguments in constructor

* WIP: clean up and integrate full config

* Add helper to handle function args more reliably

Now also includes keyword-only args

* Fix config composition and serialization

* Improve config debugging and add visual diff

* Remove unused defaults and fix type

* Remove pipeline and factories from meta

* Update spacy/default_config.cfg

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/default_config.cfg

* small UX edits

* avoid printing stack trace for debug CLI commands

* Add support for language-specific factories

* specify the section of the config which holds the model to debug

* WIP: add Language.from_config

* Update with language data refactor WIP

* Auto-format

* Add backwards-compat handling for Language.factories

* Update morphologizer.pyx

* Fix morphologizer

* Update and simplify lemmatizers

* Fix Japanese tests

* Port over tagger changes

* Fix Chinese and tests

* Update to latest Thinc

* WIP: xfail first Russian lemmatizer test

* Fix component-specific overrides

* fix nO for output layers in debug_model

* Fix default value

* Fix tests and don't pass objects in config

* Fix deep merging

* Fix lemma lookup data registry

Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed)

* Add types

* Add Vocab.from_config

* Fix typo

* Fix tests

* Make config copying more elegant

* Fix pipe analysis

* Fix lemmatizers and is_base_form

* WIP: move language defaults to config

* Fix morphology type

* Fix vocab

* Remove comment

* Update to latest Thinc

* Add morph rules to config

* Tidy up

* Remove set_morphology option from tagger factory

* Hack use_gpu

* Move [pipeline] to top-level block and make [nlp.pipeline] list

Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them

* Fix use_gpu and resume in CLI

* Auto-format

* Remove resume from config

* Fix formatting and error

* [pipeline] -> [components]

* Fix types

* Fix tagger test: requires set_morphology?

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 13:42:59 +02:00
Ines Montani
311d0bde29
Merge pull request #5788 from explosion/master-tmp 2020-07-20 15:39:24 +02:00
Ines Montani
d51db72e46 Remove Python 2 marker 2020-07-20 15:01:36 +02:00
Ines Montani
644074b954 Merge branch 'develop' into master-tmp 2020-07-20 14:58:04 +02:00
Sofie Van Landeghem
c9da9605f7
Test suite clean up (#5781)
* step_through tests: skip instead of xfail

* test_empty_doc should be fixed with new Thinc version

* remove outdated test (there are other misaligned tests now)

* xfail reason

* fix test according to french exceptions

* clarified some skipped tests

* skip ukranian test instead of xfail

* skip instead of xfail

* skip + reason instead of xfail

* removed obsolete tests referring to removed "set_frozen" functionality

* fix test 999

* remove unused AlignmentError

* remove xfail where possible, skip otherwise

* increment thinc release for empty_doc test
2020-07-20 14:49:54 +02:00
Sofie Van Landeghem
1b2ec94382
Hyphen infix (#5770)
* infix split on hyphen when preceded by number

* clean up

* skip ukranian test instead of xfail
2020-07-20 14:48:51 +02:00
Ines Montani
cb65b36839
Merge pull request #5767 from adrianeboyd/feature/remove-tag-maps 2020-07-19 15:15:34 +02:00
Ines Montani
796f6c52d1 Merge branch 'develop' into pr/5767 2020-07-19 13:37:46 +02:00
Adriane Boyd
39ebcd9ec9
Refactor Chinese tokenizer configuration (#5736)
* Refactor Chinese tokenizer configuration

Refactor `ChineseTokenizer` configuration so that it uses a single
`segmenter` setting to choose between character segmentation, jieba, and
pkuseg.

* replace `use_jieba`, `use_pkuseg`, `require_pkuseg` with the setting
`segmenter` with the supported values: `char`, `jieba`, `pkuseg`
* make the default segmenter plain character segmentation `char` (no
additional libraries required)

* Fix Chinese serialization test to use char default

* Warn if attempting to customize other segmenter

Add a warning if `Chinese.pkuseg_update_user_dict` is called when
another segmenter is selected.
2020-07-19 13:34:37 +02:00
Adriane Boyd
9ee1c54f40
Improve tag map initialization and updating (#5764)
* Improve tag map initialization and updating

Generalize tag map initialization and updating so that the tag map can
be loaded correctly prior to loading a `Corpus` with `spacy debug-data`
and `spacy train`.

* normalize provided tag map as necessary
* use the same method for initializing and updating the tag map

* Replace rather than update tag map

Replace rather than update tag map when loading a custom tag map.
Updating the tag map is problematic due to the sorted list of tag names
and the fact that the tag map will contain lingering/unwanted tags from
the default tag map.

* Update CLI scripts

* Reinitialize cache after loading new tag map

Reinitialize the cache with the right size after loading a new tag map.
2020-07-19 13:13:57 +02:00
Adriane Boyd
b81a89f0a9
Update morphologizer (#5766)
* update `Morphologizer.begin_training` for use with `Example`

* make init and begin_training more consistent

* add `Morphology.normalize_features` to normalize outside of
`Morphology.add`

* make sure `get_loss` doesn't create unknown labels when the POS and
morph alignments differ
2020-07-19 11:10:51 +02:00
Adriane Boyd
50db3f0cdb Serialize morph rules with tagger
Serialize `morph_rules` with the tagger alongside the `tag_map`.

Use `Morphology.load_tag_map` and `Morphology.load_morph_exceptions` to
load these settings rather than reinitializing the morphology each time
they are changed.
2020-07-17 08:22:21 +02:00
Adriane Boyd
2f981d5af1 Remove corpus-specific tag maps
Remove corpus-specific tag maps from the language data for languages
without custom tokenizers. For languages with custom word segmenters
that also provide tags (Japanese and Korean), the tag maps for the
custom tokenizers are kept as the default.

The default tag maps for languages without custom tokenizers are now the
default tag map from `lang/tag_map/py`, UPOS -> UPOS.
2020-07-15 15:58:29 +02:00
Adriane Boyd
a7a7e0d2a6
Add morph to morphology in Doc.from_array (#5762)
* Add morph to morphology in Doc.from_array

Add morphological analyses to morphology table in `Doc.from_array`.

* Use separate vocab in DocBin roundtrip test
2020-07-14 14:07:35 +02:00
Ines Montani
872938ec76
Merge pull request #5747 from explosion/feature/refactor-config-args 2020-07-14 00:00:22 +02:00
Ines Montani
ed55143c0d Merge branch 'develop' into compat/remove-object-subclass 2020-07-12 14:28:52 +02:00
Ines Montani
7906ddd56c Fix test 2020-07-12 14:28:34 +02:00
Ines Montani
5f6f4ff594 Remove object subclassing 2020-07-12 14:03:23 +02:00
Ines Montani
b7111da1d7 Update config and commands 2020-07-11 13:03:53 +02:00
Ines Montani
0389c34b81 Merge branch 'develop' into feature/refactor-config-args 2020-07-10 20:51:52 +02:00
Sofie Van Landeghem
de6a32315c
debug-model script (#5749)
* adding debug-model to print the internals for debugging purposes

* expend debug-model script with 4 stages: before, init, train, predict

* avoid enforcing to have a seed in the train script

* small fixes
2020-07-10 19:47:53 +02:00
Ines Montani
5cfc3edcaa Update CLI tests 2020-07-10 18:21:01 +02:00
Ines Montani
73332ddb67 Update CLI commans to use one shared util file 2020-07-10 17:57:40 +02:00
Adriane Boyd
0a62098c5f
Fix lemmatizer is_base_form for python2.7 (#5734)
* Fix lemmatizer init args for python2.7

* Move English is_base_form to a class method

* Skip test pickling PhraseMatcher for python2
2020-07-09 22:11:24 +02:00
Matthew Honnibal
552d1ad226 Hack at tests 2020-07-09 20:25:51 +02:00
Matthew Honnibal
eb064c59cd Try to fix textcat test 2020-07-09 20:24:53 +02:00
Sofie Van Landeghem
dd207a28be
cleanup components API (#5726)
* add keyword separator for update functions and drop unused "state"

* few more Example tests and various small fixes

* consistently return losses after update call

* eliminate unused tensors field across pipe components

* fix name

* fix arg name
2020-07-09 19:43:39 +02:00
Sofie Van Landeghem
c1ea55307b
Fixing reproducible training (#5735)
* Add initial reproducibility tests

* failing test for default_text_classifier (WIP)

* track trouble to underlying tok2vec layer

* add regression test for Issue 5551

* tests go green with https://github.com/explosion/thinc/pull/359

* update test

* adding fixed seeds to HashEmbed layers, seems to fix the reproducility issue

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-09 19:39:31 +02:00
Ines Montani
8f9552d9e7
Refactor project CLI (#5732)
* Make project command a submodule

* Update with WIP

* Add helper for joining commands

* Update docstrins, formatting and types

* Update assets and add support for copying local files

* Fix type

* Update success messages
2020-07-09 01:42:51 +02:00
Adriane Boyd
ad15499b3b
Fix get_loss for values outside of labels in senter (#5730)
* Fix get_loss for None alignments in senter

When converting the `sent_start` values back to `SentenceRecognizer`
labels, handle `None` alignments.

* Handle SENT_START as -1

Handle SENT_START as -1 (or -1 converted to uint64) by treating any
values other than 1 the same as 0 in `SentenceRecognizer.get_loss`.
2020-07-09 01:41:58 +02:00
Sofie Van Landeghem
a39a110c4e
Few more Example unit tests (#5720)
* small fixes in Example, UX

* add gold tests for aligned_spans and get_aligned_parse

* sentencizer unnecessary
2020-07-07 18:46:00 +02:00
Ines Montani
fa00a85828
Merge pull request #5715 from explosion/chore/tidy-regression-tests 2020-07-07 11:22:07 +02:00
Matthew Honnibal
cc477be952
Improve gold-standard alignment (#5711)
* Remove previous alignment

* Implement better alignment, using ragged data structure

* Use pytokenizations for alignment

* Fixes

* Fixes

* Fix overlapping entities in alignment

* Fix align split_sents

* Update test

* Commit align.py

* Try to appease setuptools

* Fix flake8

* use realistic entities for testing

* Update tests for better alignment

* Improve alignment heuristic

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-07-06 17:39:31 +02:00