* Don't add duplicate patterns (fix#8216)
* Refactor EntityRuler init
This simplifies the EntityRuler init code. This is helpful as prep for
allowing the EntityRuler to reset itself.
* Make EntityRuler.clear reset matchers
Includes a new test for this.
* Tidy PhraseMatcher instantiation
Since the attr can be None safely now, the guard if is no longer
required here.
Also renamed the `_validate` attr. Maybe it's not needed?
* Fix NER test
* Add test to make sure patterns aren't increasing
* Move test to regression tests
The attributes `PROB`, `CLUSTER` and `SENT_END` are not supported by
`Lexeme.get_struct_attr` so should not be included through `attrs.IDS`
as supported attributes in `Doc.to_array` and other methods.
* Show warning if entity_ruler runs without patterns
* Show warning if matcher runs without patterns
* fix wording
* unit test for warning once (WIP)
* warn W036 only once
* cleanup
* create filter_warning helper
* Add all symbols in Unicode Currency Symbols block
In #8102 it came up that the rupee symbol was treated different from
dollar / euro / yen symbols. This adds many symbols not already
included.
* Fix test
* Fix training test
* unit test for pickling KB
* add pickling test for NEL
* KB to_bytes and from_bytes
* NEL to_bytes and from_bytes
* xfail pickle tests for now
* fix docs
* cleanup
* Fix range in Span.get_lca_matrix
Fix the adjusted token index / lca matrix index ranges for
`_get_lca_matrix` for spans.
* The range for `k` should correspond to the adjusted indices in
`lca_matrix` with the `start` indexed at `0`
* Update test for v3.x
* Handle errors while multiprocessing
Handle errors while multiprocessing without hanging.
* Return the traceback for errors raised while processing a batch, which
can be handled by the top-level error handler
* Allow for shortened batches due to custom error handlers that ignore
errors and skip documents
* Define custom components at a higher level
* Also move up custom error handler
* Use simpler component for test
* Switch error type
* Adjust test
* Only call top-level error handler for exceptions
* Register custom test components within tests
Use global functions (so they can be pickled) but register the
components only within the individual tests.
* Adapt tokenization methods from `pyvi` to preserve text encoding and
whitespace
* Add serialization support similar to Chinese and Japanese
Note: as for Chinese and Japanese, some settings are duplicated in
`config.cfg` and `tokenizer/cfg`.
* Handle partial entities in Span.as_doc
In `Span.as_doc` replace partial entities at the beginning or end of the
span with missing entity annotation.
Fixes a bug where invalid entity annotation (no initial `B`) was
returned for an initial partial entity.
* Check for empty span in ents conversion
Note: `Span.as_doc()` will still fail on an empty span due to failures
in `Span.vector`.
* Preserve existing ENT_KB_ID annotation in NER
Preserve `ent_kb_id` annotation on existing entity spans, which is not
preserved by the transition system.
* Simplify kb_id assignment
* Simplify further
* Add training option to set annotations on update
Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.
* Rename to annotates / annotating_components
* Add test for `annotating_components` when training from config
* Add documentation
* Set up CI for tests with GPU agent
* Update tests for enabled GPU
* Fix steps filename
* Add parallel build jobs as a setting
* Fix test requirements
* Fix install test requirements condition
* Fix pipeline models test
* Reset current ops in prefer/require testing
* Fix more tests
* Remove separate test_models test
* Fix regression 5551
* fix StaticVectors for GPU use
* fix vocab tests
* Fix regression test 5082
* Move azure steps to .github and reenable default pool jobs
* Consolidate/rename azure steps
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
* Update sent_starts in Example.from_dict
Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.
Use `Optional[bool]` as the type for sent start values in the docs.
* Use helper function for conversion to ternary ints
* Fix tokenizer cache flushing
Fix/simplify tokenizer init detection in order to fix cache flushing
when properties are modified.
* Remove init reloading logic
* Remove logic disabling `_reload_special_cases` on init
* Setting `rules` last in `__init__` (as before) means that setting
other properties doesn't reload any special cases
* Reset `rules` first in `from_bytes` so that setting other properties
during deserialization doesn't reload any special cases
unnecessarily
* Reset all properties in `Tokenizer.from_bytes` to allow any settings
to be `None`
* Also reset special matcher when special cache is flushed
* Remove duplicate special case validation
* Add test for special cases flushing
* Extend test for tokenizer deserialization of None values
* Update Tokenizer.explain with special matches
Update `Tokenizer.explain` and the pseudo-code in the docs to include
the processing of special cases that contain affixes or whitespace.
* Handle optional settings in explain
* Add test for special matches in explain
Add test for `Tokenizer.explain` for special cases containing affixes.
* Make vocab update in get_docs deterministic
The attribute `DocBin.strings` is a set. In `DocBin.get_docs`
a given vocab is updated by iterating over this set.
Iteration over a python set produces an arbitrary ordering,
therefore vocab is updated non-deterministically.
When training (fine-tuning) a spacy model, the base model's
vocabulary will be updated with the new vocabulary in the
training data in exactly the way described above. After
serialization, the file `model/vocab/strings.json` will
be sorted in an arbitrary way. This prevents reproducible
model training.
* Revert "Make vocab update in get_docs deterministic"
This reverts commit d6b87a2f55.
* Sort strings in StringStore serialization
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* extend span scorer with consider_label and allow_overlap
* unit test for spans y2x overlap
* add score_spans unit test
* docs for new fields in scorer.score_spans
* rename to include_label
* spell out if-else for clarity
* rename to 'labeled'
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Support match alignments
* change naming from match_alignments to with_alignments, add conditional flow if with_alignments is given, validate with_alignments, add related test case
* remove added errors, utilize bint type, cleanup whitespace
* fix no new line in end of file
* Minor formatting
* Skip alignments processing if as_spans is set
* Add with_alignments to Matcher API docs
* Update website/docs/api/matcher.md
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add failing test for PRFScore
* Fix erroneous implementation of __add__
* Simplify constructor
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Adjust custom extension data when copying user data in `Span.as_doc()`
* Restrict `Doc.from_docs()` to adjusting offsets for custom extension
data
* Update test to use extension
* (Duplicate bug fix for character offset from #7497)
Merge data from `doc.spans` in `Doc.from_docs()`.
* Fix internal character offset set when merging empty docs (only
affects tokens and spans in `user_data` if an empty doc is in the list
of docs)
In the retokenizer, only reset sent starts (with
`set_children_from_head`) if the doc is parsed. If there is no parse,
merged tokens have the unset `token.is_sent_start == None` by default after
retokenization.
* add multi-label textcat to menu
* add infobox on textcat API
* add info to v3 migration guide
* small edits
* further fixes in doc strings
* add infobox to textcat architectures
* add textcat_multilabel to overview of built-in components
* spelling
* fix unrelated warn msg
* Add textcat_multilabel to quickstart [ci skip]
* remove separate documentation page for multilabel_textcategorizer
* small edits
* positive label clarification
* avoid duplicating information in self.cfg and fix textcat.score
* fix multilabel textcat too
* revert threshold to storage in cfg
* revert threshold stuff for multi-textcat
Co-authored-by: Ines Montani <ines@ines.io>
* Fix aborted/skipped augmentation for `spacy.orth_variants.v1` if
lowercasing was enabled for an example
* Simplify `spacy.orth_variants.v1` for `Example` vs. `GoldParse`
* Preserve reference tokenization in `spacy.lower_case.v1`
* initialize NLP with train corpus
* add more pretraining tests
* more tests
* function to fetch tok2vec layer for pretraining
* clarify parameter name
* test different objectives
* formatting
* fix check for static vectors when using vectors objective
* clarify docs
* logger statement
* fix init_tok2vec and proc.initialize order
* test training after pretraining
* add init_config tests for pretraining
* pop pretraining block to avoid config validation errors
* custom errors
* Fix `is_cython_func` for imported code loaded under `python_code`
module name
* Add `make_named_tempfile` context manager to test utils to test
loading of imported code
* Add test for validation of `initialize` params in custom module
* Add test for #7035
* Update test for issue 7056
* Fix test
* Fix transitions method used in testing
* Fix state eol detection when rebuffer
* Clean up redundant fix
* Add regression test
* Run PhraseMatcher on Spans
* Add test for PhraseMatcher on Spans and Docs
* Add SCA
* Add test with 3 matches in Doc, 1 match in Span
* Update docs
* Use doc.length for find_matches in tokenizer
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
```python
def test_vocab_lexeme_add_flag_auto_id(en_vocab):
is_len4 = en_vocab.add_flag(lambda string: len(string) == 4)
assert en_vocab["1999"].check_flag(is_len4) is True
assert en_vocab["1999"].check_flag(IS_DIGIT) is True
assert en_vocab["199"].check_flag(is_len4) is False
> assert en_vocab["199"].check_flag(IS_DIGIT) is True
E assert False is True
E + where False = <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840>(3)
E + where <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840> = <spacy.lexeme.Lexeme object at 0x7fa155c36840>.check_flag
spacy/tests/vocab_vectors/test_lexeme.py:49: AssertionError
```
> `pytest==6.1.1`
>
> `numpy==1.19.2`
>
> `Python version: 3.8.3`
To reproduce the error, run `pytest --random-order-bucket=global --random-order-seed=170158 -v spacy/tests`
If `test_vocab_lexeme_add_flag_auto_id` is run after `test_vocab_lexeme_add_flag_provided_id`, it fails.
It seems like `test_vocab_lexeme_add_flag_provided_id` uses the `IS_DIGIT` bit for testing purposes but does not reset the bit.
This solution seems to work but, if anyone has a better fix, please let me know and I will integrate it.
Instead of silently using only the first token in each matched span:
* Forbid `OP: ?/*/+` through `DependencyMatcher` validation
* As a fail-safe, add warning if a token match that's not exactly one
token long is found by a token pattern.
* add error handler for pipe methods
* add unit tests
* remove pipe method that are the same as their base class
* have Language keep track of a default error handler
* cleanup
* formatting
* small refactor
* add documentation
* Initial Spanish lemmatizer
* Handle merged verb+pron(s) multi-word tokens
* Use VERB for AUX rule lookup
* Add morph to lemma cache key
* Fix aux lookups, minor refactoring
* Improve verb+pron handling
* Move verb+pron handling into its own method
* Check for exceptions (primarily for se)
* Collect pronouns in the same (not reversed) order
* Only add modified possible lemmas
* Fix `spacy.util.minibatch` when the size iterator is finished (#6745)
* Skip 0-length matches (#6759)
Add hack to prevent matcher from returning 0-length matches.
* support IS_SENT_START in PhraseMatcher (#6771)
* support IS_SENT_START in PhraseMatcher
* add unit test and friendlier error
* use IDS.get instead
* ensure span.text works for an empty span (#6772)
* Remove unicode_literals
Co-authored-by: Santiago Castro <bryant@montevideo.com.uy>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* raise NotImplementedError when noun_chunks iterator is not implemented
* bring back, fix and document span.noun_chunks
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add long_token_splitter component
Add a `long_token_splitter` component for use with transformer
pipelines. This component splits up long tokens like URLs into smaller
tokens. This is particularly relevant for pretrained pipelines with
`strided_spans`, since the user can't change the length of the span
`window` and may not wish to preprocess the input texts.
The `long_token_splitter` splits tokens that are at least
`long_token_length` tokens long into smaller tokens of `split_length`
size.
Notes:
* Since this is intended for use as the first component in a pipeline,
the token splitter does not try to preserve any token annotation.
* API docs to come when the API is stable.
* Adjust API, add test
* Fix name in factory
* Handle unset token.morph in Morphologizer
Handle unset `token.morph` in `Morphologizer.initialize` and
`Morphologizer.get_loss`. If both `token.morph` and `token.pos` are
unset, treat the annotation as missing rather than empty.
* Add token.has_morph()
* Override language defaults for null token and URL match
When the serialized `token_match` or `url_match` is `None`, override the
language defaults to preserve `None` on deserialization.
* Fix fixtures in tests
* Draft out initial Spans data structure
* Initial span group commit
* Basic span group support on Doc
* Basic test for span group
* Compile span_group.pyx
* Draft addition of SpanGroup to DocBin
* Add deserialization for SpanGroup
* Add tests for serializing SpanGroup
* Fix serialization of SpanGroup
* Add EdgeC and GraphC structs
* Add draft Graph data structure
* Compile graph
* More work on Graph
* Update GraphC
* Upd graph
* Fix walk functions
* Let Graph take nodes and edges on construction
* Fix walking and getting
* Add graph tests
* Fix import
* Add module with the SpanGroups dict thingy
* Update test
* Rename 'span_groups' attribute
* Try to fix c++11 compilation
* Fix test
* Update DocBin
* Try to fix compilation
* Try to fix graph
* Improve SpanGroup docstrings
* Add doc.spans to documentation
* Fix serialization
* Tidy up and add docs
* Update docs [ci skip]
* Add SpanGroup.has_overlap
* WIP updated Graph API
* Start testing new Graph API
* Update Graph tests
* Update Graph
* Add docstring
Co-authored-by: Ines Montani <ines@ines.io>
Add `initialize.before_init` and `initialize.after_init` callbacks to
the config. The `initialize.before_init` callback is a place to
implement one-time tokenizer customizations that are then saved with the
model.
* fix TorchBiLSTMEncoder documentation
* ensure the types of the encoding Tok2vec layers are correct
* update references from v1 to v2 for the new architectures
* add syntax iterators for danish
* add test noun chunks for danish syntax iterators
* add contributor agreement
* update da syntax iterators to remove nested chunks
* add tests for da noun chunks
* Fix test
* add missing import
* fix example
* Prevent overlapping noun chunks
Prevent overlapping noun chunks by tracking the end index of the
previous noun chunk span.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* clean up of ner tests
* beam_parser tests
* implement get_beam_parses and scored_parses for the dep parser
* we don't have to add the parse if there are no arcs
* small fixes and formatting
* bring test_issue4313 up-to-date, currently fails
* formatting
* add get_beam_parses method back
* add scored_ents function
* delete tag map
Instead of unsetting lemmas on retokenized tokens, set the default
lemmas to:
* merge: concatenate any existing lemmas with `SPACY` preserved
* split: use the new `ORTH` values if lemmas were previously set,
otherwise leave unset
* multi-label textcat component
* formatting
* fix comment
* cleanup
* fix from #6481
* random edit to push the tests
* add explicit error when textcat is called with multi-label gold data
* fix error nr
* small fix
* Fix memory issues in Language.evaluate
Reset annotation in predicted docs before evaluating and store all data
in `examples`.
* Minor refactor to docs generator init
* Fix generator expression
* Fix final generator check
* Refactor pipeline loop
* Handle examples generator in Language.evaluate
* Add test with generator
* Use make_doc
* Add Amharic to space
* clean up
* Add some PRON_LEMMA
* add Tigrinya support
* remove text_noun_chunks
* Tigrinya Support
* added some more details for ti
* fix unit test
* add amharic char range
* changes from review
* amharic and tigrinya share same unicode block
* get rid of _amharic/_tigrinya in char_classes
Co-authored-by: Josiah Solomon <jsolomon@meteorcomm.com>
* Switch converters to generator functions
To reduce the memory usage when converting large corpora, refactor the
convert methods to be generator functions.
* Update tests
* Get basic beam tests working
* Get basic beam tests working
* Compile _beam_utils
* Remove prints
* Test beam density
* Beam parser seems to train
* Draft beam NER
* Upd beam
* Add hypothesis as dev dependency
* Implement missing is-gold-parse method
* Implement early update
* Fix state hashing
* Fix test
* Fix test
* Default to non-beam in parser constructor
* Improve oracle for beam
* Start refactoring beam
* Update test
* Refactor beam
* Update nn
* Refactor beam and weight by cost
* Update ner beam settings
* Update test
* Add __init__.pxd
* Upd test
* Fix test
* Upd test
* Fix test
* Remove ring buffer history from StateC
* WIP change arc-eager transitions
* Add state tests
* Support ternary sent start values
* Fix arc eager
* Fix NER
* Pass oracle cut size for beam
* Fix ner test
* Fix beam
* Improve StateC.clone
* Improve StateClass.borrow
* Work directly with StateC, not StateClass
* Remove print statements
* Fix state copy
* Improve state class
* Refactor parser oracles
* Fix arc eager oracle
* Fix arc eager oracle
* Use a vector to implement the stack
* Refactor state data structure
* Fix alignment of sent start
* Add get_aligned_sent_starts method
* Add test for ae oracle when bad sentence starts
* Fix sentence segment handling
* Avoid Reduce that inserts illegal sentence
* Update preset SBD test
* Fix test
* Remove prints
* Fix sent starts in Example
* Improve python API of StateClass
* Tweak comments and debug output of arc eager
* Upd test
* Fix state test
* Fix state test
* add test for multi-label textcat reproducibility
* remove positive_label
* fix lengths dtype
* fix comments
* remove comment that we should not have forgotten :-)
* define new architectures for the pretraining objective
* add loss function as attr of the omdel
* cleanup
* cleanup
* shorten name
* fix typo
* remove unused error
Preserve `token.spacy` corresponding to the span end token in the
original doc rather than adjusting for the current offset.
* If not modifying in place, this checks in the original document
(`doc.c` rather than `tokens`).
* If modifying in place, the document has not been modified past the
current span start position so the value at the current span end
position is valid.
* When checking for token alignments, check not only that the tokens are
identical but that the character positions are both at the start of a
token.
It's possible for the tokens to be identical even though the two
tokens aren't aligned one-to-one in a case like `["a'", "''"]` vs.
`["a", "''", "'"]`, where the middle tokens are identical but should not
be aligned on the token level at character position 2 since it's the
start of one token but the middle of another.
* Use the lowercased version of the token texts to create the
character-to-token alignment because lowercasing can change the string
length (e.g., for `İ`, see the not-a-bug bug report:
https://bugs.python.org/issue34723)
* Only set NORM on Token in retokenizer
Instead of setting `NORM` on both the token and lexeme, set `NORM` only
on the token.
The retokenizer tries to set all possible attributes with
`Token/Lexeme.set_struct_attr` so that it doesn't have to enumerate
which attributes are available for each. `NORM` is the only attribute
that's stored on both and for most cases it doesn't make sense to set
the global norms based on a individual retokenization. For lexeme-only
attributes like `IS_STOP` there's no way to avoid the global side
effects, but I think that `NORM` would be better only on the token.
* Fix test
Fix bug where `Morphologizer.get_loss` treated misaligned annotation as
`EMPTY_MORPH` rather than ignoring it. Remove unneeded default `EMPTY_MORPH`
mappings.
For the `DependencyMatcher`:
* Fix on_match callback so that it is called once per matched pattern
* Fix results so that patterns with empty match lists are not returned
* Replace pytokenizations with internal alignment
Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.
* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`
* Refactor trailing whitespace handling
* Remove unnecessary exception for empty docs
Allow a non-empty whitespace-only doc to be aligned with an empty doc
* Remove empty docs exceptions completely
* Handle missing reference values in scorer
Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.
Attributes without unset states:
* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation
Additional changes:
* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`
* Fix import
* Update return types
Modify the internal pattern representation in `Matcher` patterns to
identify the final ID state using a unique quantifier rather than a
combination of other attributes.
It was insufficient to identify the final ID node based on an
uninitialized `quantifier` (coincidentally being the same as the `ZERO`)
with `nr_attr` as 0. (In addition, it was potentially bug-prone that
`nr_attr` was set to 0 even though attrs were allocated.)
In the case of `{"OP": "!"}` (a valid, if pointless, pattern), `nr_attr`
is 0 and the quantifier is ZERO, so the previous methods for
incrementing to the ID node at the end of the pattern weren't able to
distinguish the final ID node from the `{"OP": "!"}` pattern.
* added single and paired orth variants
* added token match
* added long text tokenization test
* inverted init
* normalized lemmas to lowercase
* more abbrevs
* tests for ordinals and abbrevs
* separated period abbvrevs to another list
* fiex typo
* added ordinal and abbrev tests
* added number tests for dates
* minor refinement
* added inflected abbrevs regex
* added percentage and inflection
* cosmetics
* added token match
* added url inflection tests
* excluded url tokens from custom pattern
* removed url match import
* small fix in example imports
* throw error when train_corpus or dev_corpus is not a string
* small fix in custom logger example
* limit macro_auc to labels with 2 annotations
* fix typo
* also create parents of output_dir if need be
* update documentation of textcat scores
* refactor TextCatEnsemble
* fix tests for new AUC definition
* bump to 3.0.0a42
* update docs
* rename to spacy.TextCatEnsemble.v2
* spacy.TextCatEnsemble.v1 in legacy
* cleanup
* small fix
* update to 3.0.0rc2
* fix import that got lost in merge
* cursed IDE
* fix two typos
* Include Macedonian language
* Fix indentation at char_classes.py
* Fix indentation at char_classes.py
* Add Macedonian tests, update lex_attrs and char_classes
* Import unicode literals for python 2
* Regression test for issue 6207
* Fix issue 6207
* Sign contributor agreement
* Minor adjustments to test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* added tr_vocab to config
* basic test
* added syntax iterator to Turkish lang class
* first version for Turkish syntax iter, without flat
* added simple tests with nmod, amod, det
* more tests to amod and nmod
* separated noun chunks and parser test
* rearrangement after nchunk parser separation
* added recursive NPs
* tests with complicated recursive NPs
* tests with conjed NPs
* additional tests for conj NP
* small modification for shaving off conj from NP
* added tests with flat
* more tests with flat
* added examples with flats conjed
* added inner func for flat trick
* corrected parse
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* rename Pipe to TrainablePipe
* split functionality between Pipe and TrainablePipe
* remove unnecessary methods from certain components
* cleanup
* hasattr(component, "pipe") should be sufficient again
* remove serialization and vocab/cfg from Pipe
* unify _ensure_examples and validate_examples
* small fixes
* hasattr checks for self.cfg and self.vocab
* make is_resizable and is_trainable properties
* serialize strings.json instead of vocab
* fix KB IO + tests
* fix typos
* more typos
* _added_strings as a set
* few more tests specifically for _added_strings field
* bump to 3.0.0a36
* added tr_vocab to config
* basic test
* added syntax iterator to Turkish lang class
* first version for Turkish syntax iter, without flat
* added simple tests with nmod, amod, det
* more tests to amod and nmod
* separated noun chunks and parser test
* rearrangement after nchunk parser separation
* added recursive NPs
* tests with complicated recursive NPs
* tests with conjed NPs
* additional tests for conj NP
* small modification for shaving off conj from NP
* added tests with flat
* more tests with flat
* added examples with flats conjed
* added inner func for flat trick
* corrected parse
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Hindi: Adds tests for lexical attributes (norm and like_num)
* Signs and sdds the contributor agreement
* Add ordinal numbers to be tagged as like_num
* Adds alternate pronunciation for 31 and 39
* Regression test for issue 6207
* Fix issue 6207
* Sign contributor agreement
* Minor adjustments to test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Update arguments to MultiHashEmbed layer so that the attributes can be
controlled. A kind of tricky scheme is used to allow optional
specification of the rows. I think it's an okay balance between
flexibility and convenience.
* add informative warning when messing up store_user_data DocBin flags
* add informative warning when messing up store_user_data DocBin flags
* cleanup test
* rename to patterns_path
* Refactor Token morph setting
* Remove `Token.morph_`
* Add `Token.set_morph()`
* `0` resets `token.c.morph` to unset
* Any other values are passed to `Morphology.add`
* Add token.morph setter to set from MorphAnalysis
* Support data augmentation in Corpus
* Note initial docs for data augmentation
* Add augmenter to quickstart
* Fix flake8
* Format
* Fix test
* Update spacy/tests/training/test_training.py
* Improve data augmentation arguments
* Update templates
* Move randomization out into caller
* Refactor
* Update spacy/training/augment.py
* Update spacy/tests/training/test_training.py
* Fix augment
* Fix test
* Allow `pkuseg_model` to be set to `None` on initialization
* Don't save config within tokenizer
* Force convert pkuseg_model to use pickle protocol 4 by reencoding with
`pickle5` on serialization
* Update pkuseg serialization test
* Add MORPH handling to Matcher
* Add `MORPH` to `Matcher` schema
* Rename `_SetMemberPredicate` to `_SetPredicate`
* Add `ISSUBSET` and `ISSUPERSET` operators to `_SetPredicate`
* Add special handling for normalization and conversion of morph
values into sets
* For other attrs, `ISSUBSET` acts like `IN` and `ISSUPERSET` only
matches for 0 or 1 values
* Update test
* Rename to IS_SUBSET and IS_SUPERSET
* Add option to disable Matcher errors
* Add option to disable Matcher errors when a doc doesn't contain a
particular type of annotation
Minor additional change:
* Update `AttributeRuler.load_from_morph_rules` to allow direct `MORPH`
values
* Rename suppress_errors to allow_missing
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Refactor annotation checks in Matcher and PhraseMatcher
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* NEL: read sentences and ents from reference
* fiddling with sent_start annotations
* add KB serialization test
* KB write additional file with strings.json
* score_links function to calculate NEL P/R/F
* formatting
* documentation
Similar to how vectors are handled, move the vocab lookups to be loaded
at the start of training rather than when the vocab is initialized,
since the vocab doesn't have access to the full config when it's
created.
The option moves from `nlp.load_vocab_data` to `training.lookups`.
Typically these tables will come from `spacy-lookups-data`, but any
`Lookups` object can be provided.
The loading from `spacy-lookups-data` is now strict, so configs for each
language should specify the exact tables required. This also makes it
easier to control whether the larger clusters and probs tables are
included.
To load `lexeme_norm` from `spacy-lookups-data`:
```
[training.lookups]
@misc = "spacy.LoadLookupsData.v1"
lang = ${nlp.lang}
tables = ["lexeme_norm"]
```
In order to make it easier to construct `Doc` objects as training data,
modify how missing and blocked entity tokens are set to prioritize
setting `O` and missing entity tokens for training purposes over setting
blocked entity tokens.
* `Doc.ents` setter sets tokens outside entity spans to `O` regardless
of the current state of each token
* For `Doc.ents`, setting a span with a missing label sets the `ent_iob`
to missing instead of blocked
* `Doc.block_ents(spans)` marks spans as hard `O` for use with the
`EntityRecognizer`
* Refactor Docs.is_ flags
* Add derived `Doc.has_annotation` method
* `Doc.has_annotation(attr)` returns `True` for partial annotation
* `Doc.has_annotation(attr, require_complete=True)` returns `True` for
complete annotation
* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`
* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.
Notes on `Doc.has_annotation`:
* `HEAD` is converted to `DEP` because heads don't have an unset state
* Accept `IS_SENT_START` as a synonym of `SENT_START`
Additional changes:
* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`
* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`
* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`
* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`
* Fix call to set_children_form_heads
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Clean up spacy.tokens
* Update `set_children_from_heads`:
* Don't check `dep` when setting lr_* or sentence starts
* Set all non-sentence starts to `False`
* Use `set_children_from_heads` in `Token.head` setter
* Reduce similar/duplicate code (admittedly adds a bit of overhead)
* Update sentence starts consistently
* Remove unused `Doc.set_parse`
* Minor changes:
* Declare cython variables (to avoid cython warnings)
* Clean up imports
* Modify set_children_from_heads to set token range
Modify `set_children_from_heads` so that it adjust tokens within a
specified range rather then the whole document.
Modify the `Token.head` setter to adjust only the tokens affected by the
new head assignment.
For languages without provided models and with lemmatizer rules in
`spacy-lookups-data`, make the rule-based lemmatizer the default:
Bengali, Persian, Norwegian, Swedish
Modify `Token.morph` property so that `Token.c.morph` can be reset back
to an internal value of `0`. Allow setting `Token.morph` from a hash as
long as the morph string is already in the `StringStore`, setting it
indirectly through `Token.morph_` so that the value is added to the
morphology. If the hash is not in the `StringStore`, raise an error.
* ensure Language passes on valid examples for initialization
* fix tagger model initialization
* check for valid get_examples across components
* assume labels were added before begin_training
* fix senter initialization
* fix morphologizer initialization
* use methods to check arguments
* test textcat init, requires thinc>=8.0.0a31
* fix tok2vec init
* fix entity linker init
* use islice
* fix simple NER
* cleanup debug model
* fix assert statements
* fix tests
* throw error when adding a label if the output layer can't be resized anymore
* fix test
* add failing test for simple_ner
* UX improvements
* morphologizer UX
* assume begin_training gets a representative set and processes the labels
* remove assumptions for output of untrained NER model
* restore test for original purpose
Add official support for the `DependencyMatcher`. Redesign the pattern
specification. Fix and extend operator implementations. Update API docs
and add usage docs.
Patterns
--------
Refactor pattern structure to:
```
{
"LEFT_ID": str,
"REL_OP": str,
"RIGHT_ID": str,
"RIGHT_ATTRS": dict,
}
```
The first node contains only `RIGHT_ID` and `RIGHT_ATTRS` and all
subsequent nodes contain all four keys.
New operators
-------------
Because of the way patterns are constructed from left to right, it's
helpful to have `follows` operators along with `precedes` operators. Add
operators for simple precedes / follows alongside immediate precedes /
follows.
* `.*`: precedes
* `;`: immediately follows
* `;*`: follows
Operator fixes
--------------
* `<` and `<<` do not include the node itself
* Fix reversed order for all operators involving linear precedence (`.`,
all sibling operators)
* Linear precedence operators do not match nodes outside the same parse
Additional fixes
----------------
* Use v3 Matcher API
* Support `get` and `remove`
* Support pickling
* Prevent Tagger model init with 0 labels
Raise an error before trying to initialize a tagger model with 0 labels.
* Add dummy tagger label for test
* Remove tagless tagger model initializiation
* Fix error number after merge
* Add dummy tagger label to test
* Fix formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* rename to spacy-transformers.TransformerListener
* add some more tok2vec tests
* use select_pipes
* fix docs - annotation setter was not changed in the end
Sort the returned matches by rule order (the `match_id`) so that the
rules are applied in the order they were added. This is necessary, for
instance, if the `AttributeRuler` is used for the tag map and later
rules require POS tags.
Serialize `AttributeRuler.patterns` instead of the individual lists to
simplify the serialized and so that patterns are reloaded exactly as
they were originally provided (preserving `_attrs_unnormed`).
* Add AttributeRuler.score
Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.
Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.
* Update docs
* Update stop_words.py
Hebrew STOP WORDS
* Update stop_words.py
* contributor
* contributor
* add some common domain extentions
support human number 1K/1M....
* support human number 1K/1M....
* hebrew number tokenize
1K/1M implement in EN
* test human tokenize fix
* test
* heb like num
revert human number change
* heb like num
* Create lex_attrs.py
Hello,
I am missing a CZECH language in SpaCy. So I would like to help to push it a little. This file is base on others lex_attrs.py files just with translation to Czech.
* Update __init__.py
Updated for use with new Czech Lex_attrs file
* Update stop_words.py
* Create test_text.py
* add like_num testing for czech
Co-authored-by: holubvl3 <47881982+holubvl3@users.noreply.github.com>
Co-authored-by: holubvl3 <vilemrousi@gmail.com>
Co-authored-by: Vladimír Holubec <vholubec@arcdata.cz>
- Accept any case for label names in ents and colors option, even if actual predicted label uses different casing
- Don't text-transform: uppercase visually, if it's important to users that the label is represented as-is in the UI
- As much as I dislike YAML, it seemed like a better format here because it allows us to add comments if we want to explain the different recommendations
- Don't include the generated JS in the repo by default and build it on the fly when running or deploying the site. This ensures it's always up to date.
- Simplify jinja_to_js script and use fewer dependencies
* candidate generator as separate part of EL config
* update comment
* ent instead of str as input for candidate generation
* Span instead of str: correct type indication
* fix types
* unit test to create new candidate generator
* fix replace_pipe argument passing
* move error message, general cleanup
* add vocab back to KB constructor
* provide KB as callable from Vocab arg
* rename to kb_loader, fix KB serialization as part of the EL pipe
* fix typo
* reformatting
* cleanup
* fix comment
* fix wrongly duplicated code from merge conflict
* rename dump to to_disk
* from_disk instead of load_bulk
* update test after recent removal of set_morphology in tagger
* remove old doc
* Add Lemmatizer and simplify related components
* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests
Differences:
* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map
* Fix test
* Initial fix for Lemmatizer config/serialization
* Adjust init test to be more generic
* Adjust init test to force empty Lookups
* Add simple cache to rule-based lemmatizer
* Convert language-specific lemmatizers
Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.
* Fix French and Polish lemmatizers
* Remove outdated UPOS conversions
* Update Russian lemmatizer init in tests
* Add minimal init/run tests for custom lemmatizers
* Add option to overwrite existing lemmas
* Update mode setting, lookup loading, and caching
* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods
* Implement strict when lang is not found in lookups
* Fix tables/lookups in make_lemmatizer
* Reallow provided lookups and allow for stricter checks
* Add lookups asset to all Lemmatizer pipe tests
* Rename lookups in lemmatizer init test
* Clean up merge
* Refactor lookup table loading
* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.
Additional slight refactor of lookups:
* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`
* Move registry assets into test methods
* Refactor lookups tables config
Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.
* Add pipe and score to lemmatizer
* Simplify Tagger.score
* Add missing import
* Clean up imports and auto-format
* Remove unused kwarg
* Tidy up and auto-format
* Update docstrings for Lemmatizer
Update docstrings for Lemmatizer.
Additionally modify `is_base_form` API to take `Token` instead of
individual features.
* Update docstrings
* Remove tag map values from Tagger.add_label
* Update API docs
* Fix relative link in Lemmatizer API docs
* WIP: Concept for modifying nlp object before and after init
* Make callbacks return nlp object
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Raise if callbacks don't return correct type
* Rename, update types, add after_pipeline_creation
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add a warning when a subpattern is not processed and discarded
* Normalize subpattern attribute/operator keys to upper case like
top-level attributes
* Allow adding pipeline components from source model
* Config: name -> component
* Improve error messages
* Fix error and test
* Add frozen components and exclude logic
* Remove exclude from Language.evaluate
* Init sourced components with current vocab
* Fix error codes
* consistently use upper-case IDS in token_annotation format and for get_aligned
* remove ID from to_dict (not used in from_dict either)
* fix test
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Add AttributeRuler for token attribute exceptions
Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.
Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.
There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.
* Fix default name
* Update name in error message
* Extend AttributeRuler functionality
* Add option to initialize with a dict of AttributeRuler patterns
* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)
* Improve types
* Sort spans before processing
* Fix index boundaries in Span
* Refactor retokenizer to separate attrs methods
Add top-level `normalize_token_attrs` and `set_token_attrs` methods.
* Update AttributeRuler to use refactored methods
Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.
* Update spacy/pipeline/attributeruler.py
Co-authored-by: Ines Montani <ines@ines.io>
* Make API more similar to EntityRuler
* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`
* Make attrs_unnormed private
* Add test loading patterns from assets
* Revert "Fix index boundaries in Span"
This reverts commit 8f8a5c3386.
* Add Span index boundary checks (#5861)
* Add Span index boundary checks
* Return Span-specific IndexError in all cases
* Simplify and fix if/else
Co-authored-by: Ines Montani <ines@ines.io>
* remove empty gold.pyx
* add alignment unit test (to be used in docs)
* ensure that Alignment is only used on equal texts
* additional test using example.alignment
* formatting
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Allow Doc.char_span to snap to token boundaries
Add a `mode` option to allow `Doc.char_span` to snap to token
boundaries. The `mode` options:
* `strict`: character offsets must match token boundaries (default, same as
before)
* `inside`: all tokens completely within the character span
* `outside`: all tokens at least partially covered by the character span
Add a new helper function `token_by_char` that returns the token
corresponding to a character position in the text. Update
`token_by_start` and `token_by_end` to use `token_by_char` for more
efficient searching.
* Remove unused import
* Rename mode to alignment_mode
Rename `mode` to `alignment_mode` with the options
`strict`/`contract`/`expand`. Any unrecognized modes are silently
converted to `strict`.
* moving syntax folder to _parser_internals
* moving nn_parser and transition_system
* move nn_parser and transition_system out of internals folder
* moving nn_parser code into transition_system file
* rename transition_system to transition_parser
* moving parser_model and _state to ml
* move _state back to internals
* The Parser now inherits from Pipe!
* small code fixes
* removing unnecessary imports
* remove link_vectors_to_models
* transition_system to internals folder
* little bit more cleanup
* newlines
* add "greedy" option for match pattern
* distinction between greedy FIRST or LONGEST
* check for proper values, throw custom warning otherwise
* unxfail one more test
* add comment in docstring
* add test that LONGEST also prefers first match if equal length
* use c arrays for more efficient processing
* rename 'greediness' to 'greedy'
