Commit Graph

2430 Commits

Author SHA1 Message Date
Sofie Van Landeghem
5ace559201
ensure span.text works for an empty span (#6772) 2021-01-21 23:18:46 +08:00
Sofie Van Landeghem
d93cd3b7c0
remove artificially duplicated test [ci skip] 2021-01-21 10:53:16 +01:00
Sofie Van Landeghem
fdf8c77630
support IS_SENT_START in PhraseMatcher (#6771)
* support IS_SENT_START in PhraseMatcher

* add unit test and friendlier error

* use IDS.get instead
2021-01-21 09:59:17 +01:00
Sofie Van Landeghem
e680efc7cc
Set annotations in update (#6767)
* bump to 3.0.0rc4

* do set_annotations in component update calls

* update docs and remove set_annotations flag

* fix EL test
2021-01-20 11:49:25 +11:00
Adriane Boyd
bc7d83d4be
Skip 0-length matches (#6759)
Add hack to prevent matcher from returning 0-length matches.
2021-01-19 07:38:11 +08:00
Sofie Van Landeghem
fed8f48965
raise NotImplementedError when noun_chunks iterator is not implemented (#6711)
* raise NotImplementedError when noun_chunks iterator is not implemented

* bring back, fix and document span.noun_chunks

* formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2021-01-17 19:56:05 +08:00
Adriane Boyd
bf0cdae8d4
Add token_splitter component (#6726)
* Add long_token_splitter component

Add a `long_token_splitter` component for use with transformer
pipelines. This component splits up long tokens like URLs into smaller
tokens. This is particularly relevant for pretrained pipelines with
`strided_spans`, since the user can't change the length of the span
`window` and may not wish to preprocess the input texts.

The `long_token_splitter` splits tokens that are at least
`long_token_length` tokens long into smaller tokens of `split_length`
size.

Notes:

* Since this is intended for use as the first component in a pipeline,
the token splitter does not try to preserve any token annotation.
* API docs to come when the API is stable.

* Adjust API, add test

* Fix name in factory
2021-01-17 19:54:41 +08:00
Adriane Boyd
9328dd5625
Handle unset token.morph in Morphologizer (#6704)
* Handle unset token.morph in Morphologizer

Handle unset `token.morph` in `Morphologizer.initialize` and
`Morphologizer.get_loss`. If both `token.morph` and `token.pos` are
unset, treat the annotation as missing rather than empty.

* Add token.has_morph()
2021-01-15 17:20:10 +01:00
Ines Montani
f9e4ac1283 Fix test 2021-01-15 12:51:02 +11:00
Ines Montani
b0b743597c Tidy up and auto-format 2021-01-15 11:57:36 +11:00
Ines Montani
57369909c0
Merge pull request #6727 from adrianeboyd/chore/update-develop-from-master-rc3 2021-01-15 11:44:28 +11:00
Adriane Boyd
0c936004d1 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-rc3 2021-01-14 11:49:58 +01:00
Matthew Honnibal
92310a5e26
Merge branch 'develop' into feature/missing-dep 2021-01-14 17:39:01 +11:00
Adriane Boyd
9957ed7897
Override language defaults for null token and URL match (#6705)
* Override language defaults for null token and URL match

When the serialized `token_match` or `url_match` is `None`, override the
language defaults to preserve `None` on deserialization.

* Fix fixtures in tests
2021-01-14 17:31:29 +11:00
Matthew Honnibal
f277bfdf0f
Add SpanGroup and Graph container types to represent arbitrary annotations (#6696)
* Draft out initial Spans data structure

* Initial span group commit

* Basic span group support on Doc

* Basic test for span group

* Compile span_group.pyx

* Draft addition of SpanGroup to DocBin

* Add deserialization for SpanGroup

* Add tests for serializing SpanGroup

* Fix serialization of SpanGroup

* Add EdgeC and GraphC structs

* Add draft Graph data structure

* Compile graph

* More work on Graph

* Update GraphC

* Upd graph

* Fix walk functions

* Let Graph take nodes and edges on construction

* Fix walking and getting

* Add graph tests

* Fix import

* Add module with the SpanGroups dict thingy

* Update test

* Rename 'span_groups' attribute

* Try to fix c++11 compilation

* Fix test

* Update DocBin

* Try to fix compilation

* Try to fix graph

* Improve SpanGroup docstrings

* Add doc.spans to documentation

* Fix serialization

* Tidy up and add docs

* Update docs [ci skip]

* Add SpanGroup.has_overlap

* WIP updated Graph API

* Start testing new Graph API

* Update Graph tests

* Update Graph

* Add docstring

Co-authored-by: Ines Montani <ines@ines.io>
2021-01-14 17:30:41 +11:00
svlandeg
fec9b81aa2 Merge remote-tracking branch 'upstream/develop' into feature/missing-dep 2021-01-13 17:46:12 +01:00
svlandeg
ed53bb979d cleanup 2021-01-13 14:20:05 +01:00
svlandeg
86a4e316b8 fix sent_starts 2021-01-13 13:47:25 +01:00
Ines Montani
31a92b28ae
Merge pull request #6715 from adrianeboyd/feature/before-after-init-callbacks
Add initialize.before_init and after_init callbacks
2021-01-13 12:17:00 +11:00
Ines Montani
97d5a7ba99 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2021-01-13 12:03:02 +11:00
Ines Montani
8d6448ccf7 Add config resolver test 2021-01-13 12:02:59 +11:00
svlandeg
232e953b14 pytest.approx with absolute eps 2021-01-12 20:32:57 +01:00
svlandeg
5b598bd1d5 formatting 2021-01-12 17:28:41 +01:00
svlandeg
a581d82f33 introduce token.has_head and refer to MISSING_DEP_ (WIP) 2021-01-12 17:17:06 +01:00
Adriane Boyd
a45d89f09a Add initialize.before_init and after_init callbacks
Add `initialize.before_init` and `initialize.after_init` callbacks to
the config. The `initialize.before_init` callback is a place to
implement one-time tokenizer customizations that are then saved with the
model.
2021-01-12 13:07:44 +01:00
Adriane Boyd
ad43cbb042
Sync missing and misaligned values in Tagger loss (#6689)
Use `None` for both missing and misaligned annotation in
`Tagger.get_loss`, reverting to the default missing value in the loss
function.
2021-01-10 11:30:37 +11:00
svlandeg
dd12c6c8fd allow missing information in deps and heads annotations 2021-01-07 19:10:32 +01:00
Sofie Van Landeghem
75d9019343
Fix types of Tok2Vec encoding architectures (#6442)
* fix TorchBiLSTMEncoder documentation

* ensure the types of the encoding Tok2vec layers are correct

* update references from v1 to v2 for the new architectures
2021-01-07 16:39:27 +11:00
ophelielacroix
e3222fdec9
Add (noun chunks) syntax iterators for Danish (#6246)
* add syntax iterators for danish

* add test noun chunks for danish syntax iterators

* add contributor agreement

* update da syntax iterators to remove nested chunks

* add tests for da noun chunks

* Fix test

* add missing import
* fix example

* Prevent overlapping noun chunks

Prevent overlapping noun chunks by tracking the end index of the
previous noun chunk span.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-01-07 16:33:00 +11:00
Sofie Van Landeghem
8c1a23209f
Getting scores out of beam_parser (#6684)
* clean up of ner tests

* beam_parser tests

* implement get_beam_parses and scored_parses for the dep parser

* we don't have to add the parse if there are no arcs
2021-01-07 16:28:27 +11:00
Sofie Van Landeghem
402dbc5bae
Getting scores out of beam_ner (#6575)
* small fixes and formatting

* bring test_issue4313 up-to-date, currently fails

* formatting

* add get_beam_parses method back

* add scored_ents function

* delete tag map
2021-01-06 12:02:32 +01:00
Sofie Van Landeghem
6f7e7d88b9
remove cause without apostrophe from norm exceptions (#6636) 2021-01-06 12:30:30 +08:00
Adriane Boyd
bf9096437e
Set default lemmas in retokenizer (#6667)
Instead of unsetting lemmas on retokenized tokens, set the default
lemmas to:

* merge: concatenate any existing lemmas with `SPACY` preserved
* split: use the new `ORTH` values if lemmas were previously set,
  otherwise leave unset
2021-01-06 12:29:44 +08:00
Adriane Boyd
0041dfbc7f
Use special matcher for exceptions with spaces (#6668)
Use the special cases phrase matcher for exceptions that include space
characters so that exceptions including spaces are supported.
2021-01-06 12:05:10 +08:00
Sofie Van Landeghem
afc5714d32
multi-label textcat component (#6474)
* multi-label textcat component

* formatting

* fix comment

* cleanup

* fix from #6481

* random edit to push the tests

* add explicit error when textcat is called with multi-label gold data

* fix error nr

* small fix
2021-01-06 13:07:14 +11:00
Ines Montani
81f018fb67
Merge pull request #6671 from explosion/chore/tidy-autoformat
Tidy up and auto-format
2021-01-05 14:45:31 +11:00
Ines Montani
224a3590e9
Merge pull request #6654 from svlandeg/chore/tests-cleanup
Unskipping tests
2021-01-05 13:53:40 +11:00
Ines Montani
c4993f16d0
Merge pull request #6651 from svlandeg/bugfix/cli_info 2021-01-05 13:44:26 +11:00
Ines Montani
991669c934 Tidy up and auto-format 2021-01-05 13:41:53 +11:00
Adriane Boyd
b57be94c78
Fix memory issues in Language.evaluate (#6386)
* Fix memory issues in Language.evaluate

Reset annotation in predicted docs before evaluating and store all data
in `examples`.

* Minor refactor to docs generator init

* Fix generator expression

* Fix final generator check

* Refactor pipeline loop

* Handle examples generator in Language.evaluate

* Add test with generator

* Use make_doc
2020-12-31 10:45:50 +11:00
svlandeg
a6a68da673 unskipping tests with python >= 3.6 2020-12-30 18:46:43 +01:00
svlandeg
d5ff0fecf8 add docs 2020-12-30 14:01:13 +01:00
svlandeg
c74ab6a313 fix imports 2020-12-30 12:40:12 +01:00
svlandeg
712a78b74a add simple unit test 2020-12-30 12:35:26 +01:00
Adriane Boyd
5ca57d8221
Add logger warning when serializing user hooks (#6595)
Add a warning that user hooks are lost on serialization.

Add a `user_hooks` exclude to skip the warning with pickle.
2020-12-29 11:54:32 +01:00
Yosi
cf52510631
Add Amharic አማርኛ Language support (#6583)
* Add Amharic to space

* clean up

* Add some PRON_LEMMA

* add Tigrinya support

* remove text_noun_chunks

* Tigrinya Support

* added some more details for ti

* fix unit test

* add amharic char range

* changes from review

* amharic and tigrinya share same unicode block

* get rid of _amharic/_tigrinya in char_classes

Co-authored-by: Josiah Solomon <jsolomon@meteorcomm.com>
2020-12-22 16:50:34 +01:00
Adriane Boyd
cabd4ae5b1
Use logger.warning instead of logger.warn (#6596)
Use `logger.warning` instead of deprecated `logger.warn`.
2020-12-21 08:25:10 +08:00
Sofie Van Landeghem
282a3b49ea
Fix parser resizing when there is no upper layer (#6460)
* allow resizing of the parser model even when upper=False

* update from spacy.TransitionBasedParser.v1 to v2

* bugfix
2020-12-18 18:56:57 +08:00
Sofie Van Landeghem
0a923a7915
Tagger robustness (#6580)
* require labels in taggers

* ensure tagger works with incomplete data
2020-12-18 18:51:47 +08:00
Adriane Boyd
1ddf2f39c7
Switch converters to generator functions (#6547)
* Switch converters to generator functions

To reduce the memory usage when converting large corpora, refactor the
convert methods to be generator functions.

* Update tests
2020-12-15 16:47:16 +08:00
Matthew Honnibal
8656a08777
Add beam_parser and beam_ner components for v3 (#6369)
* Get basic beam tests working

* Get basic beam tests working

* Compile _beam_utils

* Remove prints

* Test beam density

* Beam parser seems to train

* Draft beam NER

* Upd beam

* Add hypothesis as dev dependency

* Implement missing is-gold-parse method

* Implement early update

* Fix state hashing

* Fix test

* Fix test

* Default to non-beam in parser constructor

* Improve oracle for beam

* Start refactoring beam

* Update test

* Refactor beam

* Update nn

* Refactor beam and weight by cost

* Update ner beam settings

* Update test

* Add __init__.pxd

* Upd test

* Fix test

* Upd test

* Fix test

* Remove ring buffer history from StateC

* WIP change arc-eager transitions

* Add state tests

* Support ternary sent start values

* Fix arc eager

* Fix NER

* Pass oracle cut size for beam

* Fix ner test

* Fix beam

* Improve StateC.clone

* Improve StateClass.borrow

* Work directly with StateC, not StateClass

* Remove print statements

* Fix state copy

* Improve state class

* Refactor parser oracles

* Fix arc eager oracle

* Fix arc eager oracle

* Use a vector to implement the stack

* Refactor state data structure

* Fix alignment of sent start

* Add get_aligned_sent_starts method

* Add test for ae oracle when bad sentence starts

* Fix sentence segment handling

* Avoid Reduce that inserts illegal sentence

* Update preset SBD test

* Fix test

* Remove prints

* Fix sent starts in Example

* Improve python API of StateClass

* Tweak comments and debug output of arc eager

* Upd test

* Fix state test

* Fix state test
2020-12-13 09:08:32 +08:00
Ines Montani
9d32e839d3 Merge branch 'develop' into feature/init-config-cpu-gpu 2020-12-10 08:50:53 +11:00
Ines Montani
f2571b5ec4
Merge pull request #6444 from adrianeboyd/chore/update-develop-from-master 2020-12-09 13:09:58 +11:00
Ines Montani
90171f2031
Merge pull request #6528 from svlandeg/feature/pipe_fill_config 2020-12-09 12:01:22 +11:00
Ines Montani
dfaef27f90
Merge pull request #6503 from adrianeboyd/feature/lemmatizer-rule-warning-pos
Warn on empty POS for the rule-based lemmatizer
2020-12-09 11:34:16 +11:00
Ines Montani
b85bd63eca Fix test 2020-12-09 11:24:01 +11:00
Ines Montani
febf71af28 Fix test 2020-12-09 11:23:07 +11:00
Ines Montani
1980203229 Merge branch 'master' into pr/6444 2020-12-09 11:09:40 +11:00
Ines Montani
05a2812ae0 Merge branch 'develop' into pr/6444 2020-12-09 11:04:03 +11:00
Sofie Van Landeghem
cfc72c2995
Bugfix multi-label textcat reproducibility (#6481)
* add test for multi-label textcat reproducibility

* remove positive_label

* fix lengths dtype

* fix comments

* remove comment that we should not have forgotten :-)
2020-12-09 06:29:15 +08:00
svlandeg
8f8a7f1733 returning config in init_config 2020-12-08 17:37:20 +01:00
Sofie Van Landeghem
2c27093c5f
require_cpu functionality (#6336)
* add require_cpu from Thinc 8.0.0rc2

* add docs

* fix test if cupy is not installed
2020-12-08 14:42:40 +08:00
Sofie Van Landeghem
f98a04434a
pretrain architectures (#6451)
* define new architectures for the pretraining objective

* add loss function as attr of the omdel

* cleanup

* cleanup

* shorten name

* fix typo

* remove unused error
2020-12-08 14:41:03 +08:00
Adriane Boyd
29b058ebdc
Fix spacy when retokenizing cases with affixes (#6475)
Preserve `token.spacy` corresponding to the span end token in the
original doc rather than adjusting for the current offset.

* If not modifying in place, this checks in the original document
(`doc.c` rather than `tokens`).
* If modifying in place, the document has not been modified past the
current span start position so the value at the current span end
position is valid.
2020-12-08 14:25:56 +08:00
Adriane Boyd
4448680750
Fix alignment for 1-to-1 tokens and lowercasing (#6476)
* When checking for token alignments, check not only that the tokens are
identical but that the character positions are both at the start of a
token.

  It's possible for the tokens to be identical even though the two
tokens aren't aligned one-to-one in a case like `["a'", "''"]` vs.
`["a", "''", "'"]`, where the middle tokens are identical but should not
be aligned on the token level at character position 2 since it's the
start of one token but the middle of another.

* Use the lowercased version of the token texts to create the
character-to-token alignment because lowercasing can change the string
length (e.g., for `İ`, see the not-a-bug bug report:
https://bugs.python.org/issue34723)
2020-12-08 14:25:16 +08:00
Adriane Boyd
d70950605c Warn on empty POS for the rule-based lemmatizer
Add a warning to the rule-based lemmatizer for any tokens without POS
annotation.
2020-12-04 11:46:15 +01:00
Sofie Van Landeghem
d6c616a125
Fixes in test suite (#6457)
* fix slow test for textcat readers

* cleanup test_issue5551

* add explicit score weight

* cleanup
2020-12-02 12:57:08 +01:00
Adriane Boyd
53c0fb7431
Only set NORM on Token in retokenizer (#6464)
* Only set NORM on Token in retokenizer

Instead of setting `NORM` on both the token and lexeme, set `NORM` only
on the token.

The retokenizer tries to set all possible attributes with
`Token/Lexeme.set_struct_attr` so that it doesn't have to enumerate
which attributes are available for each. `NORM` is the only attribute
that's stored on both and for most cases it doesn't make sense to set
the global norms based on a individual retokenization. For lexeme-only
attributes like `IS_STOP` there's no way to avoid the global side
effects, but I think that `NORM` would be better only on the token.

* Fix test
2020-11-30 09:35:42 +08:00
Adriane Boyd
03ae77e603
Add SPACY as a Matcher attribute (#6463) 2020-11-30 09:34:50 +08:00
Adriane Boyd
724831b066 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master
* Update Macedonian for v3
* Update Turkish for v3
2020-11-25 11:49:34 +01:00
Sofie Van Landeghem
2af31a8c8d
Bugfix textcat reproducibility on GPU (#6411)
* add seed argument to ParametricAttention layer

* bump thinc to 7.4.3

* set thinc version range

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-11-23 12:29:35 +01:00
Adriane Boyd
320a8b1481
Add ent_id_ to strings serialized with Doc (#6353) 2020-11-10 20:16:07 +08:00
Adriane Boyd
a7e7d6c6c9
Ignore misaligned in Morphologizer.get_loss (#6363)
Fix bug where `Morphologizer.get_loss` treated misaligned annotation as
`EMPTY_MORPH` rather than ignoring it. Remove unneeded default `EMPTY_MORPH`
mappings.
2020-11-10 20:15:09 +08:00
Ines Montani
363ac73c72 Update docs [ci skip] 2020-11-09 12:43:26 +08:00
Adriane Boyd
31de700b0f
Fix on_match callback and remove empty patterns (#6312)
For the `DependencyMatcher`:

* Fix on_match callback so that it is called once per matched pattern
* Fix results so that patterns with empty match lists are not returned
2020-11-05 09:16:26 +01:00
Adriane Boyd
1c4df8fd09
Replace pytokenizations with internal alignment (#6293)
* Replace pytokenizations with internal alignment

Replace pytokenizations with internal alignment algorithm that is
restricted to only allow differences in whitespace and capitalization.

* Rename `spacy.training.align` to `spacy.training.alignment` to contain
the `Alignment` dataclass
* Implement `get_alignments` in `spacy.training.align`

* Refactor trailing whitespace handling

* Remove unnecessary exception for empty docs

Allow a non-empty whitespace-only doc to be aligned with an empty doc

* Remove empty docs exceptions completely
2020-11-03 16:24:38 +01:00
Adriane Boyd
a4b32b9552
Handle missing reference values in scorer (#6286)
* Handle missing reference values in scorer

Handle missing values in reference doc during scoring where it is
possible to detect an unset state for the attribute. If no reference
docs contain annotation, `None` is returned instead of a score. `spacy
evaluate` displays `-` for missing scores and the missing scores are
saved as `None`/`null` in the metrics.

Attributes without unset states:

* `token.head`: relies on `token.dep` to recognize unset values
* `doc.cats`: unable to handle missing annotation

Additional changes:

* add optional `has_annotation` check to `score_scans` to replace
`doc.sents` hack
* update `score_token_attr_per_feat` to handle missing and empty morph
representations
* fix bug in `Doc.has_annotation` for normalization of `IS_SENT_START`
vs. `SENT_START`

* Fix import

* Update return types
2020-11-03 15:47:18 +01:00
Adriane Boyd
5d2cb86c34
Fix on_match callback for DependencyMatcher (#6313)
Fix `DependencyMatcher` so that the callback is called only once per
match.
2020-10-31 12:20:27 +01:00
Adriane Boyd
45c9a68828
Identify final Matcher pattern node by quantifier (#6317)
Modify the internal pattern representation in `Matcher` patterns to
identify the final ID state using a unique quantifier rather than a
combination of other attributes.

It was insufficient to identify the final ID node based on an
uninitialized `quantifier` (coincidentally being the same as the `ZERO`)
with `nr_attr` as 0. (In addition, it was potentially bug-prone that
`nr_attr` was set to 0 even though attrs were allocated.)

In the case of `{"OP": "!"}` (a valid, if pointless, pattern), `nr_attr`
is 0 and the quantifier is ZERO, so the previous methods for
incrementing to the ID node at the end of the pattern weren't able to
distinguish the final ID node from the `{"OP": "!"}` pattern.
2020-10-31 12:18:48 +01:00
Duygu Altinok
0e55f806dd
Turkish tokenization improvements (#6268)
* added single and paired orth variants

* added token match

* added long text tokenization test

* inverted init

* normalized lemmas to lowercase

* more abbrevs

* tests for ordinals and abbrevs

* separated period abbvrevs to another list

* fiex typo

* added ordinal and abbrev tests

* added number tests for dates

* minor refinement

* added inflected abbrevs regex

* added percentage and inflection

* cosmetics

* added token match

* added url inflection tests

* excluded url tokens from custom pattern

* removed url match import
2020-10-29 09:43:17 +01:00
Sofie Van Landeghem
75a202ce65
TextCat updates and fixes (#6263)
* small fix in example imports

* throw error when train_corpus or dev_corpus is not a string

* small fix in custom logger example

* limit macro_auc to labels with 2 annotations

* fix typo

* also create parents of output_dir if need be

* update documentation of textcat scores

* refactor TextCatEnsemble

* fix tests for new AUC definition

* bump to 3.0.0a42

* update docs

* rename to spacy.TextCatEnsemble.v2

* spacy.TextCatEnsemble.v1 in legacy

* cleanup

* small fix

* update to 3.0.0rc2

* fix import that got lost in merge

* cursed IDE

* fix two typos
2020-10-18 14:50:41 +02:00
Jan Margeta
1ad2213349 Fix TokenPatternSchema pattern field validation
Empty pattern field should be considered invalid

This is fixed by replacing minItems with min_items
as described in Pydantic docs:
https://pydantic-docs.helpmanual.io/usage/schema/
2020-10-16 00:41:21 +02:00
Borijan Georgievski
2311192ba1
Include Macedonian language (#6230)
* Include Macedonian language

* Fix indentation at char_classes.py

* Fix indentation at char_classes.py

* Add Macedonian tests, update lex_attrs and char_classes

* Import unicode literals for python 2
2020-10-15 15:55:01 +02:00
Ines Montani
b1d568a4df Tidy up tests 2020-10-15 10:20:21 +02:00
Ines Montani
d165af26be Auto-format [ci skip] 2020-10-15 10:08:53 +02:00
Ines Montani
5d62499266 Fix tests 2020-10-15 09:29:15 +02:00
Ines Montani
178760855f Merge branch 'develop' into master-tmp 2020-10-15 09:06:03 +02:00
svlandeg
0796401c19 call NumpyOps instead of get_current_ops() 2020-10-14 16:55:00 +02:00
svlandeg
e94a21638e adding tests for trained models to ensure predict reproducibility 2020-10-13 21:07:13 +02:00
svlandeg
ede979d42f formattting 2020-10-13 18:53:17 +02:00
svlandeg
ff83bfae3f naming 2020-10-13 18:52:37 +02:00
svlandeg
6ccacff54e add tests for individual spacy layers 2020-10-13 18:50:07 +02:00
svlandeg
c23041ae60 component tests single or multiple prediction 2020-10-13 16:26:53 +02:00
svlandeg
3a505e7e14 small edit to ensure the new word was indeed new 2020-10-10 21:05:28 +02:00
svlandeg
68d79796c6 add test for vocab after serializing KB 2020-10-10 20:59:48 +02:00
Ines Montani
539b0c10da Tidy up and auto-format 2020-10-10 19:14:48 +02:00
Ines Montani
bfa3931c9d
Revert added_strings change (#6236) 2020-10-10 18:55:07 +02:00
Ines Montani
525f798841 Fix typo in test 2020-10-09 18:00:21 +02:00
Ines Montani
b7cb9d95e4
Merge pull request #6229 from svlandeg/bugfix/disabled 2020-10-09 16:05:11 +02:00
Ines Montani
9fb3244672
Merge pull request #6231 from adrianeboyd/feature/include-static-vectors 2020-10-09 15:54:52 +02:00
Adriane Boyd
727370c633 Remove Span._recalculate_indices
Remove `Span._recalculate_indices`, which is a remnant from the
deprecated `Span.merge`.
2020-10-09 14:42:51 +02:00
svlandeg
06b9d213fd formatting 2020-10-09 12:19:47 +02:00
Ines Montani
4771a10503 Make test more explicit [ci skip] 2020-10-09 12:15:26 +02:00
Ines Montani
cc3646b06c Add xfailing test for peculiar spans failure [ci skip] 2020-10-09 12:10:25 +02:00
svlandeg
8316bc7d4a bugfix DisabledPipes 2020-10-09 12:06:20 +02:00
Adriane Boyd
39aabf50ab Also rename to include_static_vectors in CharEmbed 2020-10-09 11:54:48 +02:00
Florijan Stamenković
18f5c309dc Fix Issue 6207 (#6208)
* Regression test for issue 6207

* Fix issue 6207

* Sign contributor agreement

* Minor adjustments to test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-09 10:14:40 +02:00
Duygu Altinok
80fb1bffc9 Ordinal numbers for Turkish (#6142)
* minor ordinal number addition

* fixed typo

* added corresponding lexical test
2020-10-09 10:13:15 +02:00
Duygu Altinok
2fad279a44 Turkish language syntax iterators (#6191)
* added tr_vocab to config

* basic test

* added syntax iterator to Turkish lang class

* first version for Turkish syntax iter, without flat

* added simple tests with nmod, amod, det

* more tests to amod and nmod

* separated noun chunks and parser test

* rearrangement after nchunk parser separation

* added recursive NPs

* tests with complicated recursive NPs

* tests with conjed NPs

* additional tests for conj NP

* small modification for shaving off conj from NP

* added tests with flat

* more tests with flat

* added examples with flats conjed

* added inner func for flat trick

* corrected parse

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-09 10:10:22 +02:00
Sofie Van Landeghem
d093d6343b
TrainablePipe (#6213)
* rename Pipe to TrainablePipe

* split functionality between Pipe and TrainablePipe

* remove unnecessary methods from certain components

* cleanup

* hasattr(component, "pipe") should be sufficient again

* remove serialization and vocab/cfg from Pipe

* unify _ensure_examples and validate_examples

* small fixes

* hasattr checks for self.cfg and self.vocab

* make is_resizable and is_trainable properties

* serialize strings.json instead of vocab

* fix KB IO + tests

* fix typos

* more typos

* _added_strings as a set

* few more tests specifically for _added_strings field

* bump to 3.0.0a36
2020-10-08 21:33:49 +02:00
Ines Montani
8ff73f04db Fix morph in Doc.to_json 2020-10-08 14:44:35 +02:00
Ines Montani
064575d79d
Merge pull request #6216 from svlandeg/feature/nel-initialize 2020-10-08 11:14:12 +02:00
svlandeg
eaf5c265cb set_kb method for entity_linker 2020-10-08 10:34:01 +02:00
Ines Montani
010956d493 Clear rule-based components on initialize 2020-10-08 09:51:31 +02:00
Sofie Van Landeghem
2998131416
Reproducibility for TextCat and Tok2Vec (#6218)
* ensure fixed seed in HashEmbed layers

* forgot about the joys of python 2
2020-10-08 00:43:46 +02:00
svlandeg
efedccea8d fix tests 2020-10-07 15:29:52 +02:00
svlandeg
6b8bdb2d39 add init_config to nlp.create_pipe 2020-10-07 14:58:16 +02:00
Duygu Altinok
7e821c2776
Turkish language syntax iterators (#6191)
* added tr_vocab to config

* basic test

* added syntax iterator to Turkish lang class

* first version for Turkish syntax iter, without flat

* added simple tests with nmod, amod, det

* more tests to amod and nmod

* separated noun chunks and parser test

* rearrangement after nchunk parser separation

* added recursive NPs

* tests with complicated recursive NPs

* tests with conjed NPs

* additional tests for conj NP

* small modification for shaving off conj from NP

* added tests with flat

* more tests with flat

* added examples with flats conjed

* added inner func for flat trick

* corrected parse

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-07 11:07:52 +02:00
Duygu Altinok
b95a11dd95
Ordinal numbers for Turkish (#6142)
* minor ordinal number addition

* fixed typo

* added corresponding lexical test
2020-10-07 10:25:37 +02:00
Rahul Gupta
1a00bff06d
Hindi: Adds tests for lexical attributes (norm and like_num) (#5829)
* Hindi: Adds tests for lexical attributes (norm and like_num)

* Signs and sdds the contributor agreement

* Add ordinal numbers to be tagged as like_num

* Adds alternate pronunciation for 31 and 39
2020-10-07 10:23:32 +02:00
Sofie Van Landeghem
fff3f8ccfa
Fix packaging pin (#6212)
* pin packaging to >=20.0

* ignore spacy-pkuseg in requirements unit test
2020-10-06 14:16:05 +02:00
Matthew Honnibal
cfb9770a94
Fix empty input into StaticVectors layer (#6211)
* Add test for empty doc(s)

* Fix empty check in staticvectors

* Remove xfail

* Update spacy/ml/staticvectors.py
2020-10-06 14:15:41 +02:00
Florijan Stamenković
9db670b996
Fix Issue 6207 (#6208)
* Regression test for issue 6207

* Fix issue 6207

* Sign contributor agreement

* Minor adjustments to test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-06 11:17:37 +02:00
Ines Montani
568e12215d
Merge pull request #6206 from svlandeg/fix/patterns-init 2020-10-06 10:27:23 +02:00
svlandeg
ff9ac39c88 read entity_ruler patterns with srsly.read_jsonl.v1 2020-10-05 22:50:14 +02:00
Ines Montani
126268ce50 Auto-format [ci skip] 2020-10-05 21:58:18 +02:00
Ines Montani
181039bd17
Merge pull request #6205 from explosion/feature/embed-features 2020-10-05 21:49:10 +02:00
Ines Montani
568617af58
Merge pull request #6202 from explosion/feature/project-spacy-version 2020-10-05 21:40:52 +02:00
Ines Montani
6abfc2911d
Merge pull request #6203 from adrianeboyd/feature/zh-spacy-pkuseg 2020-10-05 21:35:57 +02:00
Matthew Honnibal
91d0fbb588 Fix test 2020-10-05 21:13:53 +02:00
Matthew Honnibal
b392d48e76 Fix test 2020-10-05 20:17:07 +02:00
Matthew Honnibal
db84d175c3 Fix test 2020-10-05 19:59:30 +02:00
Matthew Honnibal
6dcc4a0ba6 Simplify MultiHashEmbed signature 2020-10-05 19:57:45 +02:00
Matthew Honnibal
7d93575f35 spacy/tests/ 2020-10-05 15:28:12 +02:00
Matthew Honnibal
f4ca9a39cb spacy/tests/ 2020-10-05 15:27:06 +02:00
Matthew Honnibal
f2f1deca66 spacy/tests/ 2020-10-05 15:24:33 +02:00
Matthew Honnibal
8ec79ad3fa Allow configuration of MultiHashEmbed features
Update arguments to MultiHashEmbed layer so that the attributes can be
controlled. A kind of tricky scheme is used to allow optional
specification of the rows. I think it's an okay balance between
flexibility and convenience.
2020-10-05 15:22:00 +02:00
Adriane Boyd
5d19dfc9d3 Update Chinese tokenizer for spacy-pkuseg fork 2020-10-05 14:21:53 +02:00
Ines Montani
6958510bda Include spaCy version check in project CLI 2020-10-05 13:53:07 +02:00
Ines Montani
20f2a17a09 Merge test_misc and test_util 2020-10-05 13:45:57 +02:00
Ines Montani
1c641e41c3 Remove unused import [ci skip] 2020-10-05 11:50:11 +02:00
Adriane Boyd
b0b93854cb Update ru/uk lemmatizers for new nlp.initialize 2020-10-05 09:27:16 +02:00
Ines Montani
549758f67d Adjust test for now 2020-10-04 23:16:09 +02:00
Ines Montani
3c36a57e84
Update data augmenters (#6196)
* Draft lower-case augmenter

* Make warning a debug log

* Update lowercase augmenter, docs and tests

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-10-04 17:46:29 +02:00
Ines Montani
496228771d
Merge pull request #6194 from explosion/master-tmp 2020-10-04 15:25:41 +02:00
Ines Montani
0307a228c8
Merge pull request #6193 from explosion/fix/adjust-pipe-init
Adjust [initialize.components] on Language.remove_pipe and Language.rename_pipe
2020-10-04 15:20:54 +02:00
Ines Montani
59deeb7da6 Merge branch 'develop' into master-tmp 2020-10-04 14:52:20 +02:00
Ines Montani
8f018e47f8 Adjust [initialize.components] on Language.remove_pipe and Language.rename_pipe 2020-10-04 14:43:45 +02:00
Ines Montani
11347f34da Tidy up, tests and docs 2020-10-04 13:54:05 +02:00
Ines Montani
d3b3663942 Adjust error message and add test 2020-10-04 10:11:27 +02:00
Ines Montani
2110e8f86d Auto-format 2020-10-04 10:06:49 +02:00
Matthew Honnibal
835070cedc Upd test 2020-10-03 19:35:10 +02:00
Ines Montani
c2401fca41 Add tests for Pipe.label_data 2020-10-03 19:12:46 +02:00
Ines Montani
3bc3c05fcc Tidy up and auto-format 2020-10-03 17:20:18 +02:00
Ines Montani
7c4ab7e82c Fix Lemmatizer.get_lookups_config 2020-10-03 17:16:10 +02:00
Ines Montani
dd542ec6a4
Fix label initialization of textcat component (#6190) 2020-10-03 17:07:38 +02:00
Sofie Van Landeghem
09dcb75076
small UX fix for DocBin (#6167)
* add informative warning when messing up store_user_data DocBin flags

* add informative warning when messing up store_user_data DocBin flags

* cleanup test

* rename to patterns_path
2020-10-02 15:43:32 +02:00
Ines Montani
f0b30aedad
Make lemmatizers use initialize logic (#6182)
* Make lemmatizer use initialize logic and tidy up

* Fix typo

* Raise for uninitialized tables
2020-10-02 15:42:36 +02:00
Ines Montani
d2aa662ab2
Merge pull request #6179 from adrianeboyd/feature/token-morph-refactor-2 [ci skip] 2020-10-02 12:10:27 +02:00
Ines Montani
c41a4332e4 Add test for custom data augmentation 2020-10-02 11:37:56 +02:00
Adriane Boyd
f83dfe62da Fix test 2020-10-02 10:17:26 +02:00
Ines Montani
01c1538c72 Integrate file readers 2020-10-02 01:36:06 +02:00
Adriane Boyd
86c3ec9c2b
Refactor Token morph setting (#6175)
* Refactor Token morph setting

* Remove `Token.morph_`
* Add `Token.set_morph()`
  * `0` resets `token.c.morph` to unset
  * Any other values are passed to `Morphology.add`

* Add token.morph setter to set from MorphAnalysis
2020-10-01 22:21:46 +02:00
Ines Montani
d48ddd6c9a Remove default initialize lookups 2020-10-01 21:54:33 +02:00
Adriane Boyd
73538782a0
Switch Doc.__init__(ents=) to IOB tags (#6173)
* Switch Doc.__init__(ents=) to IOB tags

* Fix check for "-"

* Allow "" or None as missing IOB tag
2020-10-01 16:22:18 +02:00
Yohei Tamura
3243ddac8f
Fix/span.sent (#6083)
* add fail test

* fix test

* fix span.sent

* Remove incorrect implicit check

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2020-10-01 14:01:52 +02:00
Ines Montani
381258b75b
Merge pull request #6165 from explosion/feature/update-tokenizers-initialize 2020-10-01 09:49:47 +02:00
Ines Montani
a103ab5f1a Update augmenter lookups and docs 2020-09-30 23:03:47 +02:00
Ines Montani
23c63eefaf Tidy up env vars [ci skip] 2020-09-30 15:15:11 +02:00
Adriane Boyd
6b7bb32834 Refactor Chinese initialization 2020-09-30 11:46:45 +02:00
Ines Montani
34f9c26c62 Add lexeme norm defaults 2020-09-30 10:20:14 +02:00
Ines Montani
1aeef3bfbb Make corpus paths default to None and improve errors 2020-09-29 22:33:46 +02:00
Ines Montani
fa47f87924 Tidy up and auto-format 2020-09-29 21:39:28 +02:00
Ines Montani
6467a560e3 WIP: Test updating Chinese tokenizer 2020-09-29 21:10:22 +02:00
Ines Montani
78021089f9
Merge pull request #6160 from explosion/feature/prepare 2020-09-29 20:55:13 +02:00
Ines Montani
c3f8c09d7d
Merge pull request #6154 from adrianeboyd/bugfix/chinese-tokenizer-pickle 2020-09-29 20:54:59 +02:00
Ines Montani
d3c63b7965 Merge branch 'develop' into feature/prepare 2020-09-29 20:53:05 +02:00
Ines Montani
2be80379ec Fix small issues, resolve_dot_names and debug model 2020-09-29 20:38:35 +02:00
Ines Montani
7851020653 Update tests 2020-09-29 18:14:15 +02:00
Ines Montani
f2352eb701 Test with default value 2020-09-29 17:00:40 +02:00
Ines Montani
63d1598137 Simplify config use in Language.initialize 2020-09-29 16:05:48 +02:00
Ines Montani
56f8bc73ef Add more tests 2020-09-29 15:23:34 +02:00
Ines Montani
591038b1a4 Add test 2020-09-29 12:54:52 +02:00
Matthew Honnibal
e1fdf2b7c5 Upd tests 2020-09-29 12:05:38 +02:00
Ines Montani
ff9a63bfbd begin_training -> initialize 2020-09-28 21:35:09 +02:00
Ines Montani
2e9c9e74af Fix config resolution and interpolation
TODO: auto-interpolate in Thinc if config is dict (i.e. likely subsection)
2020-09-28 15:34:00 +02:00
Ines Montani
822ea4ef61 Refactor CLI 2020-09-28 15:09:59 +02:00
Matthew Honnibal
a976da168c
Support data augmentation in Corpus (#6155)
* Support data augmentation in Corpus

* Note initial docs for data augmentation

* Add augmenter to quickstart

* Fix flake8

* Format

* Fix test

* Update spacy/tests/training/test_training.py

* Improve data augmentation arguments

* Update templates

* Move randomization out into caller

* Refactor

* Update spacy/training/augment.py

* Update spacy/tests/training/test_training.py

* Fix augment

* Fix test
2020-09-28 03:03:27 +02:00
Ines Montani
9016d23cc5 Fix exclude and add test 2020-09-27 23:34:03 +02:00
Ines Montani
7e938ed63e Update config resolution to use new Thinc 2020-09-27 22:21:31 +02:00
Adriane Boyd
8393dbedad Minor fixes
* Put `cfg` back in serialization
* Add `pickle5` to pytest conf
2020-09-27 15:15:53 +02:00
Adriane Boyd
11e195d3ed Update ChineseTokenizer
* Allow `pkuseg_model` to be set to `None` on initialization
* Don't save config within tokenizer
* Force convert pkuseg_model to use pickle protocol 4 by reencoding with
`pickle5` on serialization
* Update pkuseg serialization test
2020-09-27 14:00:18 +02:00
Ines Montani
ca3c997062 Improve CLI config validation with latest Thinc 2020-09-26 13:13:57 +02:00
Adriane Boyd
3c062b3911
Add MORPH handling to Matcher (#6107)
* Add MORPH handling to Matcher

* Add `MORPH` to `Matcher` schema
* Rename `_SetMemberPredicate` to `_SetPredicate`
* Add `ISSUBSET` and `ISSUPERSET` operators to `_SetPredicate`
  * Add special handling for normalization and conversion of morph
    values into sets
  * For other attrs, `ISSUBSET` acts like `IN` and `ISSUPERSET` only
    matches for 0 or 1 values

* Update test

* Rename to IS_SUBSET and IS_SUPERSET
2020-09-24 16:55:09 +02:00
Adriane Boyd
59340606b7
Add option to disable Matcher errors (#6125)
* Add option to disable Matcher errors

* Add option to disable Matcher errors when a doc doesn't contain a
particular type of annotation

Minor additional change:

* Update `AttributeRuler.load_from_morph_rules` to allow direct `MORPH`
values

* Rename suppress_errors to allow_missing

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Refactor annotation checks in Matcher and PhraseMatcher

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-24 16:54:39 +02:00
Sofie Van Landeghem
c7eedd3534
updates to NEL functionality (#6132)
* NEL: read sentences and ents from reference

* fiddling with sent_start annotations

* add KB serialization test

* KB write additional file with strings.json

* score_links function to calculate NEL P/R/F

* formatting

* documentation
2020-09-24 16:53:59 +02:00
Ines Montani
d0ef4a4cf5 Prevent division by zero in score weights 2020-09-24 16:42:13 +02:00
Ines Montani
58dde293ce
Merge pull request #6089 from adrianeboyd/feature/doc-ents-v3-2 2020-09-24 14:44:42 +02:00
Adriane Boyd
8eaacaae97 Refactor Doc.ents setter to use Doc.set_ents
Additional changes:

* Entity spans with missing labels are ignored
* Fix ent_kb_id setting in `Doc.set_ents`
2020-09-24 12:36:51 +02:00
Ines Montani
c6c67b606e
Merge pull request #6133 from explosion/fix/score_weights 2020-09-24 12:00:57 +02:00
Ines Montani
4bbe41f017 Fix combined scores and update test 2020-09-24 10:42:47 +02:00
Sofie Van Landeghem
c645c4e7ce
fix micro PRF for textcat (#6130)
* fix micro PRF for textcat

* small fix
2020-09-24 10:31:17 +02:00
Ines Montani
ae51f580c1 Fix handling of score_weights 2020-09-24 10:27:33 +02:00
svlandeg
b816ace4bb format 2020-09-23 17:33:13 +02:00
svlandeg
5a9fdbc8ad state_type as Literal 2020-09-23 17:32:14 +02:00
svlandeg
dd2292793f 'parser' instead of 'deps' for state_type 2020-09-23 16:53:49 +02:00
svlandeg
6c85fab316 state_type and extra_state_tokens instead of nr_feature_tokens 2020-09-23 13:35:09 +02:00
Ines Montani
60a317520a
Merge pull request #6109 from svlandeg/feature/2rename 2020-09-23 09:47:12 +02:00
Sofie Van Landeghem
86a08f819d
tok2vec.update instead of predict (#6113) 2020-09-22 21:54:52 +02:00
Adriane Boyd
e4acb28658
Fix norm in retokenizer split (#6111)
Parallel to behavior in merge, reset norm on original token in
retokenizer split.
2020-09-22 21:53:33 +02:00
Sofie Van Landeghem
e0e793be4d
fix KB IO (#6118) 2020-09-22 21:53:06 +02:00
Sofie Van Landeghem
d53c84b6d6
avoid None callback (#6100) 2020-09-22 13:54:44 +02:00
Adriane Boyd
535842e483
Merge branch 'develop' into feature/doc-ents-v3-2 2020-09-22 13:45:50 +02:00
Ines Montani
5e3b796b12 Validate section refs in debug config 2020-09-22 12:24:39 +02:00
svlandeg
e1b8090b9b few more fixes 2020-09-22 12:01:06 +02:00
svlandeg
b556a10808 rename converts in_to_out 2020-09-22 11:50:19 +02:00
Ines Montani
beb766d0a0 Add test 2020-09-22 09:15:57 +02:00
Ines Montani
69f7e52c26 Update README.md 2020-09-22 09:10:06 +02:00
Ines Montani
67fbcb3da5 Tidy up tests and docs 2020-09-21 20:43:54 +02:00
Ines Montani
a5f6ab4943
Merge pull request #6098 from adrianeboyd/feature/doc-init 2020-09-21 18:35:20 +02:00
Adriane Boyd
f212303729 Add sent_starts to Doc.__init__
Add sent_starts to `Doc.__init__`. Officially specify `is_sent_start`
values but also convert to and accept `sent_start` internally.
2020-09-21 17:59:09 +02:00
Adriane Boyd
177df15d89 Implement Doc.set_ents 2020-09-21 15:54:05 +02:00
Adriane Boyd
13fbf6556a Merge remote-tracking branch 'upstream/develop' into feature/doc-ents-v3-2 2020-09-21 14:42:04 +02:00
Adriane Boyd
ce455f30ca Fix formatting 2020-09-21 13:53:29 +02:00
Adriane Boyd
bc02e86494 Extend Doc.__init__ with additional annotation
Mostly copying from `spacy.tests.util.get_doc`, add additional kwargs to
`Doc.__init__` to initialize the most common doc/token values.
2020-09-21 13:36:24 +02:00
Ines Montani
758ead8a47 Sync overrides with CLI overrides 2020-09-21 12:50:13 +02:00
Ines Montani
5497acf49a Support config overrides via environment variables 2020-09-21 11:25:10 +02:00
Ines Montani
1114219ae3 Tidy up and auto-format 2020-09-21 10:59:07 +02:00
Adriane Boyd
eed4b785f5 Load vocab lookups tables at beginning of training
Similar to how vectors are handled, move the vocab lookups to be loaded
at the start of training rather than when the vocab is initialized,
since the vocab doesn't have access to the full config when it's
created.

The option moves from `nlp.load_vocab_data` to `training.lookups`.

Typically these tables will come from `spacy-lookups-data`, but any
`Lookups` object can be provided.

The loading from `spacy-lookups-data` is now strict, so configs for each
language should specify the exact tables required. This also makes it
easier to control whether the larger clusters and probs tables are
included.

To load `lexeme_norm` from `spacy-lookups-data`:

```
[training.lookups]
@misc = "spacy.LoadLookupsData.v1"
lang = ${nlp.lang}
tables = ["lexeme_norm"]
```
2020-09-18 15:59:16 +02:00
Ines Montani
a127fa475e
Merge pull request #6078 from svlandeg/fix/corpus 2020-09-18 14:44:21 +02:00
Adriane Boyd
a88106e852
Remove W106: HEAD and SENT_START in doc.from_array (#6086)
* Remove W106: HEAD and SENT_START in doc.from_array

This warning was hacky and being triggered too often.

* Fix test
2020-09-18 03:01:29 +02:00
Adriane Boyd
8b650f3a78 Modify setting missing and blocked entity tokens
In order to make it easier to construct `Doc` objects as training data,
modify how missing and blocked entity tokens are set to prioritize
setting `O` and missing entity tokens for training purposes over setting
blocked entity tokens.

* `Doc.ents` setter sets tokens outside entity spans to `O` regardless
of the current state of each token

* For `Doc.ents`, setting a span with a missing label sets the `ent_iob`
to missing instead of blocked

* `Doc.block_ents(spans)` marks spans as hard `O` for use with the
`EntityRecognizer`
2020-09-17 21:27:42 +02:00
svlandeg
427dbecdd6 cleanup and formatting 2020-09-17 11:48:04 +02:00
svlandeg
0c35885751 generalize corpora, dot notation for dev and train corpus 2020-09-17 11:38:59 +02:00
svlandeg
781fae678b Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-17 09:24:36 +02:00
Adriane Boyd
7e4cd7575c
Refactor Docs.is_ flags (#6044)
* Refactor Docs.is_ flags

* Add derived `Doc.has_annotation` method

  * `Doc.has_annotation(attr)` returns `True` for partial annotation

  * `Doc.has_annotation(attr, require_complete=True)` returns `True` for
    complete annotation

* Add deprecation warnings to `is_tagged`, `is_parsed`, `is_sentenced`
and `is_nered`

* Add `Doc._get_array_attrs()`, which returns a full list of `Doc` attrs
for use with `Doc.to_array`, `Doc.to_bytes` and `Doc.from_docs`. The
list is the `DocBin` attributes list plus `SPACY` and `LENGTH`.

Notes on `Doc.has_annotation`:

* `HEAD` is converted to `DEP` because heads don't have an unset state

* Accept `IS_SENT_START` as a synonym of `SENT_START`

Additional changes:

* Add `NORM`, `ENT_ID` and `SENT_START` to default attributes for
`DocBin`

* In `Doc.from_array()` the presence of `DEP` causes `HEAD` to override
`SENT_START`

* In `Doc.from_array()` using `attrs` other than
`Doc._get_array_attrs()` (i.e., a user's custom list rather than our
default internal list) with both `HEAD` and `SENT_START` shows a warning
that `HEAD` will override `SENT_START`

* `set_children_from_heads` does not require dependency labels to set
sentence boundaries and sets `sent_start` for all non-sentence starts to
`-1`

* Fix call to set_children_form_heads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-17 00:14:01 +02:00
Adriane Boyd
a119667a36
Clean up spacy.tokens (#6046)
* Clean up spacy.tokens

* Update `set_children_from_heads`:
  * Don't check `dep` when setting lr_* or sentence starts
  * Set all non-sentence starts to `False`

* Use `set_children_from_heads` in `Token.head` setter
  * Reduce similar/duplicate code (admittedly adds a bit of overhead)
  * Update sentence starts consistently

* Remove unused `Doc.set_parse`

* Minor changes:
  * Declare cython variables (to avoid cython warnings)
  * Clean up imports

* Modify set_children_from_heads to set token range

Modify `set_children_from_heads` so that it adjust tokens within a
specified range rather then the whole document.

Modify the `Token.head` setter to adjust only the tokens affected by the
new head assignment.
2020-09-16 20:32:38 +02:00
Adriane Boyd
f3db3f6fe0
Add vectors option to CharacterEmbed (#6069)
* Add vectors option to CharacterEmbed

* Update spacy/pipeline/morphologizer.pyx

* Adjust default morphologizer config

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-09-16 17:45:04 +02:00
Adriane Boyd
87c329c711
Set rule-based lemmatizers as default (#6076)
For languages without provided models and with lemmatizer rules in
`spacy-lookups-data`, make the rule-based lemmatizer the default:
Bengali, Persian, Norwegian, Swedish
2020-09-16 17:37:29 +02:00
svlandeg
1040e250d8 actual commit with test for custom readers with ml_datasets >= 0.2 2020-09-16 16:41:28 +02:00
svlandeg
0d1392340f Merge remote-tracking branch 'upstream/develop' into fix/corpus 2020-09-15 23:17:08 +02:00
svlandeg
f420aa1138 use e.value to get to the ExceptionInfo value 2020-09-15 22:30:09 +02:00
svlandeg
51fa929f47 rewrite train_corpus to corpus.train in config 2020-09-15 21:58:04 +02:00
svlandeg
bd87e8686e move tests to correct subdir 2020-09-15 21:40:38 +02:00
Ines Montani
aaf01689a1 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-09-15 14:24:42 +02:00
Ines Montani
91a6637f74 Remove extra pipe config values before merging 2020-09-15 14:24:17 +02:00
Ines Montani
d3d7f92f05 Fix lang check and error handling in Language.from_config 2020-09-15 14:24:06 +02:00
Ines Montani
2ed6e2a218 Auto-format 2020-09-15 14:20:04 +02:00
Ines Montani
253ba5ef14 Raise for bad Vocab values 2020-09-15 13:25:34 +02:00
Ines Montani
7dfc4bc062 Allow overriding meta from spacy.blank 2020-09-15 11:12:12 +02:00
Matthew Honnibal
e8378b57bc Fix test 2020-09-14 21:21:13 +02:00
Sofie Van Landeghem
3216a33149
positive_label config for textcat (#6062)
* hook up positive_label in textcat

* unit tests

* documentation

* formatting

* tests

* fix typo

* move verify_config to after begin_training

* revert accidential commit
2020-09-14 17:08:00 +02:00
Sofie Van Landeghem
744df9814a
define threshold for scoring textcat in TextCat config (#6055)
* define threshold for scoring textcat in TextCat config

* fix unit test and documentation
2020-09-13 14:15:52 +02:00
Adriane Boyd
ab270364f1
Modify Token.morph to enable unsetting (#6043)
Modify `Token.morph` property so that `Token.c.morph` can be reset back
to an internal value of `0`. Allow setting `Token.morph` from a hash as
long as the morph string is already in the `StringStore`, setting it
indirectly through `Token.morph_` so that the value is added to the
morphology. If the hash is not in the `StringStore`, raise an error.
2020-09-13 14:06:07 +02:00
Adriane Boyd
c7bd631b5f
Fix token.idx for special cases with affixes (#6035) 2020-09-13 14:05:36 +02:00
Matthew Honnibal
54c40223a1
Improve v3 pretrain command (#6040)
* Starts to run

* Update pretrain script

* Update corpus

* Update pretrain schema

* Remove outdated test

* Make JsonlTexts produce Example objects.
2020-09-13 14:05:05 +02:00
Ines Montani
febb99916d Tidy up and auto-format [ci skip] 2020-09-13 10:55:36 +02:00
svlandeg
115147804a string_to_list to parse comma-separated string into a list 2020-09-12 14:43:22 +02:00
Sofie Van Landeghem
cb66ea7400
Remove simple_ner code (#6041)
* remove simple_ner code

* remove unused _biluo and _iob files
2020-09-09 16:11:27 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042)
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
2020-09-09 10:31:03 +02:00
Sofie Van Landeghem
60f22e1800
Pipe API (#6034)
* ensure Language passes on valid examples for initialization

* fix tagger model initialization

* check for valid get_examples across components

* assume labels were added before begin_training

* fix senter initialization

* fix morphologizer initialization

* use methods to check arguments

* test textcat init, requires thinc>=8.0.0a31

* fix tok2vec init

* fix entity linker init

* use islice

* fix simple NER

* cleanup debug model

* fix assert statements

* fix tests

* throw error when adding a label if the output layer can't be resized anymore

* fix test

* add failing test for simple_ner

* UX improvements

* morphologizer UX

* assume begin_training gets a representative set and processes the labels

* remove assumptions for output of untrained NER model

* restore test for original purpose
2020-09-08 22:44:25 +02:00
Ines Montani
f174c7b1f3 Merge branch 'develop' into pr/6018 2020-09-04 15:54:49 +02:00
Ines Montani
d7cc2ee72d Fix tests 2020-09-04 14:05:55 +02:00
Ines Montani
90043a6f9b Tidy up and auto-format 2020-09-04 13:42:33 +02:00
Ines Montani
df0b68f60e Remove unicode declarations and update language data 2020-09-04 13:19:16 +02:00
Ines Montani
864a697e63 Merge branch 'develop' into master-tmp 2020-09-04 13:15:36 +02:00
Adriane Boyd
b927893309
Merge branch 'develop' into feature/dependency-matcher-v3 2020-09-04 13:03:30 +02:00
Ines Montani
5afe6447cd registry.assets -> registry.misc 2020-09-03 17:31:14 +02:00
Ines Montani
c063e55eb7 Add prefix to batchers 2020-09-03 17:30:41 +02:00
Yohei Tamura
5af432e0f2
fix for empty string (#5936) 2020-09-03 10:09:03 +02:00
Adriane Boyd
8b5594df86 Remove near-duplicate test 2020-09-02 20:32:01 +02:00
Adriane Boyd
960d9cfadc Officially support DependencyMatcher
Add official support for the `DependencyMatcher`. Redesign the pattern
specification. Fix and extend operator implementations. Update API docs
and add usage docs.

Patterns
--------

Refactor pattern structure to:

```
{
  "LEFT_ID": str,
  "REL_OP": str,
  "RIGHT_ID": str,
  "RIGHT_ATTRS": dict,
}
```

The first node contains only `RIGHT_ID` and `RIGHT_ATTRS` and all
subsequent nodes contain all four keys.

New operators
-------------

Because of the way patterns are constructed from left to right, it's
helpful to have `follows` operators along with `precedes` operators. Add
operators for simple precedes / follows alongside immediate precedes /
follows.

* `.*`: precedes
* `;`: immediately follows
* `;*`: follows

Operator fixes
--------------

* `<` and `<<` do not include the node itself
* Fix reversed order for all operators involving linear precedence (`.`,
  all sibling operators)
* Linear precedence operators do not match nodes outside the same parse

Additional fixes
----------------

* Use v3 Matcher API
* Support `get` and `remove`
* Support pickling
2020-09-02 17:45:29 +02:00
Sofie Van Landeghem
eb56377799
Fix overfitting test (#6011)
* remove unused MORPH_RULES

* fix textcat architecture in overfitting test
2020-09-02 13:07:41 +02:00
Sofie Van Landeghem
f7a25d69f7
Bugfix in merge_entities (#6005)
* failing test

* bugfix
2020-09-01 21:57:52 +02:00
Adriane Boyd
9130094199
Prevent Tagger model init with 0 labels (#5984)
* Prevent Tagger model init with 0 labels

Raise an error before trying to initialize a tagger model with 0 labels.

* Add dummy tagger label for test

* Remove tagless tagger model initializiation

* Fix error number after merge

* Add dummy tagger label to test

* Fix formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-31 21:24:33 +02:00
Ines Montani
add9de5487 Deprecate (Phrase)Matcher.pipe 2020-08-31 17:01:24 +02:00
Ines Montani
6340d1c63d Add as_spans to Matcher/PhraseMatcher 2020-08-31 14:53:22 +02:00
Sofie Van Landeghem
ec14744ee4
Rename Transformer listener (#6001)
* rename to spacy-transformers.TransformerListener

* add some more tok2vec tests

* use select_pipes

* fix docs - annotation setter was not changed in the end
2020-08-31 12:41:39 +02:00
Adriane Boyd
216efaf5f5 Restrict tokenizer exceptions to ORTH and NORM 2020-08-31 09:55:01 +02:00
Ines Montani
45f46a5c85
Merge pull request #5993 from explosion/feature/disabled-components 2020-08-29 15:58:41 +02:00
Ines Montani
34146750d4 Use frozen list with custom errors
We don't want to break backwards compatibility too much but we also want to provide the best possible UX
2020-08-29 15:20:11 +02:00
Ines Montani
744f432420
Merge pull request #5994 from explosion/feature/idempotent-component-decorator 2020-08-29 13:17:13 +02:00
Ines Montani
2bc31e15c9 Tidy up and auto-format [ci skip] 2020-08-29 13:01:10 +02:00
Ines Montani
15d73f4dc3 Make user-facing Language.disabled return list
More consistent with all the other properties
2020-08-29 12:08:33 +02:00
Ines Montani
0687d7148e Rename user-facing API 2020-08-28 21:04:02 +02:00
Adriane Boyd
0104bd1600 Sort the AttributeRuler matches by rule order
Sort the returned matches by rule order (the `match_id`) so that the
rules are applied in the order they were added. This is necessary, for
instance, if the `AttributeRuler` is used for the tag map and later
rules require POS tags.
2020-08-28 21:01:06 +02:00
Adriane Boyd
8674b17651 Serialize AttributeRuler.patterns
Serialize `AttributeRuler.patterns` instead of the individual lists to
simplify the serialized and so that patterns are reloaded exactly as
they were originally provided (preserving `_attrs_unnormed`).
2020-08-28 20:44:45 +02:00
Ines Montani
10da74382f Raise if disabled components are removed before DisabledPipes.restore 2020-08-28 20:35:26 +02:00
Ines Montani
cad988da7f Allow component decorators to re-run with same function 2020-08-28 16:27:22 +02:00
Ines Montani
3ce5be4b76 Allow loaded but disabled components 2020-08-28 15:20:14 +02:00
Ines Montani
9c4049b57f
Merge pull request #5986 from explosion/fix/language-config-interpolate-disk-bytes 2020-08-28 15:03:52 +02:00
Ines Montani
adc050cdc5 Fix code style in test [ci skip] 2020-08-28 15:03:21 +02:00
Ines Montani
a51b4f3a19 Merge branch 'develop' into fix/language-config-interpolate-disk-bytes 2020-08-28 13:21:17 +02:00
svlandeg
9a8255ffd5 two tests because of different exit type 2020-08-28 10:50:26 +02:00
svlandeg
73baaf330a update error type 2020-08-28 10:46:21 +02:00
Ines Montani
daac8ebacd Don't interpolate config on Language deserialization 2020-08-27 16:44:36 +02:00
Adriane Boyd
90d88729e0
Add AttributeRuler.score (#5963)
* Add AttributeRuler.score

Add scoring for TAG / POS / MORPH / LEMMA if these are present in the
assigned token attributes.

Add default score weights (that don't really make a lot of sense) so
that the scores are in the default config in some form.

* Update docs
2020-08-26 15:39:30 +02:00
Hiroshi Matsuda
332803eda9
fix ja leading spaces (#5969)
* change condition for space after

* add NAUGHTY_STRINGS test example
2020-08-25 14:16:24 +02:00
Ines Montani
dd84577a98 Update CLI utils, project.yml schema and add test 2020-08-25 11:54:53 +02:00
Shashank
450720aca2
Added support for Sanskrit language (#5956)
* Added support for Sanskrit language

* Added tests for lexical attribute like_num
2020-08-25 10:56:29 +02:00
Ines Montani
e12b03358b
Support removing extra values in fill-config (#5966)
* Support removing extra values in fill-config

* Fix test
2020-08-24 22:53:47 +02:00
Ines Montani
0e7f99da58
Fix handling of optional [pretraining] block (#5954)
* Fix handling of optional [pretraining] block

* Remote pretraining from default config

* Fix test

* Add schema option for empty pretrain block
2020-08-24 15:56:03 +02:00
idoshr
b10c7bc56e
Hebrew like num (#5952)
* Update stop_words.py

Hebrew STOP WORDS

* Update stop_words.py

* contributor

* contributor

* add some common domain extentions
support human number 1K/1M....

* support human number 1K/1M....

* hebrew number tokenize
1K/1M implement in EN

* test human tokenize fix

* test

* heb like num
revert human number change

* heb like num
2020-08-24 14:30:05 +02:00
Matthew Honnibal
160a855246 Format 2020-08-23 21:15:12 +02:00
Matthew Honnibal
e559867605
Allow spacy project to push and pull to/from remote storage (#5949)
* Add utils for working with remote storage

* WIP add remote_cache for project

* WIP add push and pull commands

* Use pathy in remote_cache

* Updarte util

* Update remote_cache

* Update util

* Update project assets

* Update pull script

* Update push script

* Fix type annotation in util

* Work on remote storage

* Remove site and env hash

* Fix imports

* Fix type annotation

* Require pathy

* Require pathy

* Fix import

* Add a util to handle project variable substitution

* Import push and pull commands

* Fix pull command

* Fix push command

* Fix tarfile in remote_storage

* Improve printing

* Fiddle with status messages

* Set version to v3.0.0a9

* Draft docs for spacy project remote storages

* Update docs [ci skip]

* Use Thinc config to simplify and unify template variables

* Auto-format

* Don't import Pathy globally for now

Causes slow and annoying Google Cloud warning

* Tidy up test

* Tidy up and update tests

* Update to latest Thinc

* Update docs

* variables -> vars

* Update docs [ci skip]

* Update docs [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-23 18:32:09 +02:00
Sofie Van Landeghem
56eabcb2f2
Adding num_like test for Czech (#5946)
* Create lex_attrs.py

Hello,

I am missing a CZECH language in SpaCy. So I would like to help to push it a little. This file is base on others lex_attrs.py files just with translation to Czech.

* Update __init__.py

Updated for use with new Czech Lex_attrs file

* Update stop_words.py

* Create test_text.py

* add like_num testing for czech

Co-authored-by: holubvl3 <47881982+holubvl3@users.noreply.github.com>
Co-authored-by: holubvl3 <vilemrousi@gmail.com>
Co-authored-by: Vladimír Holubec <vholubec@arcdata.cz>
2020-08-21 17:06:33 +02:00
svlandeg
af36d77d01 fix typo in docstring 2020-08-21 15:56:03 +02:00
Ines Montani
e60442d83a Adjust label casing in displaCy NER visualizer (resolves #4866)
- Accept any case for label names in ents and colors option, even if actual predicted label uses different casing
- Don't text-transform: uppercase visually, if it's important to users that the label is represented as-is in the UI
2020-08-21 11:51:31 +02:00
Ines Montani
6ad59d59fe Merge branch 'develop' of https://github.com/explosion/spaCy into develop [ci skip] 2020-08-20 11:20:58 +02:00
Sofie Van Landeghem
071c09ff35
add coding (#5942) 2020-08-20 11:08:38 +02:00
Ines Montani
e2f2ef3a5a Update init config and recommendations
- As much as I dislike YAML, it seemed like a better format here because it allows us to add comments if we want to explain the different recommendations
- Don't include the generated JS in the repo by default and build it on the fly when running or deploying the site. This ensures it's always up to date.
- Simplify jinja_to_js script and use fewer dependencies
2020-08-19 13:33:15 +02:00
Sofie Van Landeghem
358cbb21e3
Define candidate generator in EL config (#5876)
* candidate generator as separate part of EL config

* update comment

* ent instead of str as input for candidate generation

* Span instead of str: correct type indication

* fix types

* unit test to create new candidate generator

* fix replace_pipe argument passing

* move error message, general cleanup

* add vocab back to KB constructor

* provide KB as callable from Vocab arg

* rename to kb_loader, fix KB serialization as part of the EL pipe

* fix typo

* reformatting

* cleanup

* fix comment

* fix wrongly duplicated code from merge conflict

* rename dump to to_disk

* from_disk instead of load_bulk

* update test after recent removal of set_morphology in tagger

* remove old doc
2020-08-18 16:10:36 +02:00
Ines Montani
3ae5e02f4f Update docs, types and API consistency 2020-08-17 16:45:24 +02:00
Ines Montani
45f13cbf64
Merge pull request #5916 from explosion/feature/new-thinc-config 2020-08-16 15:24:12 +02:00
Ines Montani
a570c304df Update quickstart, template and docs 2020-08-15 14:50:29 +02:00
Ines Montani
3272a63430
Merge pull request #5920 from explosion/fix/logging-warning-various 2020-08-15 14:41:15 +02:00
Matthew Honnibal
9ebf39fb5f Relax test 2020-08-14 16:31:09 +02:00
Ines Montani
8128e5eb35 Replace lexeme_norm warning with logging 2020-08-14 15:00:52 +02:00
Ines Montani
88b0a96801 Update for new Thinc and adjust config 2020-08-13 17:38:30 +02:00
Ines Montani
950832f087
Tidy up pipes (#5906)
* Tidy up pipes

* Fix init, defaults and raise custom errors

* Update docs

* Update docs [ci skip]

* Apply suggestions from code review

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Tidy up error handling and validation, fix consistency

* Simplify get_examples check

* Remove unused import [ci skip]

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-11 23:29:31 +02:00
Ines Montani
c099f6eece Add Token.lex 2020-08-10 16:43:52 +02:00
Ines Montani
3eaeb73342 Tidy up and auto-format 2020-08-09 22:36:23 +02:00
Ines Montani
8d2baa153d Update tokenizer docs and add test 2020-08-09 15:24:01 +02:00
Matthew Honnibal
8a13f510d6 Update tests 2020-08-09 15:01:16 +02:00
Ines Montani
fe29ceec9e Merge branch 'develop' into docs/model-docstrings 2020-08-07 18:42:01 +02:00
Ines Montani
3a193eb8f1 Fix imports, types and default configs 2020-08-07 18:40:54 +02:00
Adriane Boyd
e962784531
Add Lemmatizer and simplify related components (#5848)
* Add Lemmatizer and simplify related components

* Add `Lemmatizer` pipe with `lookup` and `rule` modes using the
`Lookups` tables.
* Reduce `Tagger` to a simple tagger that sets `Token.tag` (no pos or lemma)
* Reduce `Morphology` to only keep track of morph tags (no tag map, lemmatizer,
or morph rules)
* Remove lemmatizer from `Vocab`
* Adjust many many tests

Differences:

* No default lookup lemmas
* No special treatment of TAG in `from_array` and similar required
* Easier to modify labels in a `Tagger`
* No extra strings added from morphology / tag map

* Fix test

* Initial fix for Lemmatizer config/serialization

* Adjust init test to be more generic

* Adjust init test to force empty Lookups

* Add simple cache to rule-based lemmatizer

* Convert language-specific lemmatizers

Convert language-specific lemmatizers to component lemmatizers. Remove
previous lemmatizer class.

* Fix French and Polish lemmatizers

* Remove outdated UPOS conversions

* Update Russian lemmatizer init in tests

* Add minimal init/run tests for custom lemmatizers

* Add option to overwrite existing lemmas

* Update mode setting, lookup loading, and caching

* Make `mode` an immutable property
* Only enforce strict `load_lookups` for known supported modes
* Move caching into individual `_lemmatize` methods

* Implement strict when lang is not found in lookups

* Fix tables/lookups in make_lemmatizer

* Reallow provided lookups and allow for stricter checks

* Add lookups asset to all Lemmatizer pipe tests

* Rename lookups in lemmatizer init test

* Clean up merge

* Refactor lookup table loading

* Add helper from `load_lemmatizer_lookups` that loads required and
optional lookups tables based on settings provided by a config.

Additional slight refactor of lookups:

* Add `Lookups.set_table` to set a table from a provided `Table`
* Reorder class definitions to be able to specify type as `Table`

* Move registry assets into test methods

* Refactor lookups tables config

Use class methods within `Lemmatizer` to provide the config for
particular modes and to load the lookups from a config.

* Add pipe and score to lemmatizer

* Simplify Tagger.score

* Add missing import

* Clean up imports and auto-format

* Remove unused kwarg

* Tidy up and auto-format

* Update docstrings for Lemmatizer

Update docstrings for Lemmatizer.

Additionally modify `is_base_form` API to take `Token` instead of
individual features.

* Update docstrings

* Remove tag map values from Tagger.add_label

* Update API docs

* Fix relative link in Lemmatizer API docs
2020-08-07 15:27:13 +02:00
Ines Montani
ef2c67cca5
Add DocBin to/from_disk methods and update docs (#5892)
* Add DocBin to/from_disk methods and update docs

* Use DocBin.from_disk in Corpus
2020-08-07 14:30:59 +02:00
Matthew Honnibal
d4525816ef
Be less choosy about reporting textcat scores (#5879)
* Set textcat scores more consistently

* Refactor textcat scores

* Fixes to scorer

* Add comments

* Add threshold

* Rename just 'f' to micro_f in textcat scorer

* Fix textcat score for two-class

* Fix syntax

* Fix textcat score

* Fix docstring
2020-08-06 16:24:13 +02:00
Adriane Boyd
5e683a6e46
Fix return values for per feat score (#5885)
* Fix return values for per feat score

Convert `PRFScore` to dict as other per type scores.

* Update tests accordingly
2020-08-06 15:14:47 +02:00
Ines Montani
5cc0d89fad
Simplify config overrides in CLI and deserialization (#5880) 2020-08-05 23:35:09 +02:00
Ines Montani
823e533dc1
Add config callbacks for modifying nlp object before and after init (#5866)
* WIP: Concept for modifying nlp object before and after init

* Make callbacks return nlp object

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>

* Raise if callbacks don't return correct type

* Rename, update types, add after_pipeline_creation

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-05 19:47:54 +02:00
Ines Montani
e68459296d Tidy up and auto-format 2020-08-05 16:00:59 +02:00
Adriane Boyd
4193402c47
Add warning when Matcher subpattern is discarded (#5873)
* Add a warning when a subpattern is not processed and discarded

* Normalize subpattern attribute/operator keys to upper case like
top-level attributes
2020-08-05 14:56:14 +02:00
Adriane Boyd
af125875cf
Update SimpleNER (#5878)
* Fix `get_loss` to use NER annotation
* Add labels as part of cfg
* Add simple overfitting test
2020-08-05 14:43:29 +02:00
Sofie Van Landeghem
b88c5c701a
Bugfix in nlp.replace_pipe (#5875)
* bugfix and unit test

* merge two conditions
2020-08-05 09:30:58 +02:00
Ines Montani
b795f02fbd
Allow adding pipeline components from source model (#5857)
* Allow adding pipeline components from source model

* Config: name -> component

* Improve error messages

* Fix error and test

* Add frozen components and exclude logic

* Remove exclude from Language.evaluate

* Init sourced components with current vocab

* Fix error codes
2020-08-04 23:39:19 +02:00
Sofie Van Landeghem
34873c4911
Example Dict format consistency (#5858)
* consistently use upper-case IDS in token_annotation format and for get_aligned

* remove ID from to_dict (not used in from_dict either)

* fix test

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 22:22:26 +02:00
Adriane Boyd
fa79a0db9f
Add AttributeRuler for token attribute exceptions (#5842)
* Add AttributeRuler for token attribute exceptions

Add the `AttributeRuler` to handle exceptions for token-level
attributes. The `AttributeRuler` uses `Matcher` patterns to identify
target spans and applies the specified attributes to the token at the
provided index in the matched span. A negative index can be used to
index from the end of the matched span. The retokenizer is used to
"merge" the individual tokens and assign them the provided attributes.

Helper functions can import existing tag maps and morph rules to the
corresponding `Matcher` patterns.

There is an additional minor bug fix for `MORPH` attributes in the
retokenizer to correctly normalize the values and to handle `MORPH`
alongside `_` in an attrs dict.

* Fix default name

* Update name in error message

* Extend AttributeRuler functionality

* Add option to initialize with a dict of AttributeRuler patterns

* Instead of silently discarding overlapping matches (the default
behavior for the retokenizer if only the attrs differ), split the
matches into disjoint sets and retokenize each set separately. This
allows, for instance, one pattern to set the POS and another pattern to
set the lemma. (If two matches modify the same attribute, it looks like
the attrs are applied in the order they were added, but it may not be
deterministic?)

* Improve types

* Sort spans before processing

* Fix index boundaries in Span

* Refactor retokenizer to separate attrs methods

Add top-level `normalize_token_attrs` and `set_token_attrs` methods.

* Update AttributeRuler to use refactored methods

Update `AttributeRuler` to replace use of full retokenizer with only the
relevant methods for normalizing and setting attributes for a single
token.

* Update spacy/pipeline/attributeruler.py

Co-authored-by: Ines Montani <ines@ines.io>

* Make API more similar to EntityRuler

* Add `AttributeRuler.add_patterns` to add patterns from a list of dicts
* Return list of dicts as property `AttributeRuler.patterns`

* Make attrs_unnormed private

* Add test loading patterns from assets

* Revert "Fix index boundaries in Span"

This reverts commit 8f8a5c3386.

* Add Span index boundary checks (#5861)

* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 17:02:39 +02:00
Sofie Van Landeghem
492d1ec5de
Prevent alignment when texts don't match (#5867)
* remove empty gold.pyx

* add alignment unit test (to be used in docs)

* ensure that Alignment is only used on equal texts

* additional test using example.alignment

* formatting

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-08-04 16:29:18 +02:00
Matthew Honnibal
ecb3c4e8f4
Create corpus iterator and batcher from registry during training (#5865)
* Move batchers into their own module (and registry)

* Update CLI

* Update Corpus and batcher

* Update tests

* Update one config

* Merge 'evaluation' block back under [training]

* Import batchers in gold __init__

* Fix batchers

* Update config

* Update schema

* Update util

* Don't assume train and dev are actually paths

* Update onto-joint config

* Fix missing import

* Format

* Format

* Update spacy/gold/corpus.py

Co-authored-by: Ines Montani <ines@ines.io>

* Fix name

* Update default config

* Fix get_length option in batchers

* Update test

* Add comment

* Pass path into Corpus

* Update docstring

* Update schema and configs

* Update config

* Fix test

* Fix paths

* Fix print

* Fix create_train_batches

* [training.read_train] -> [training.train_corpus]

* Update onto-joint config

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-04 15:09:37 +02:00
Sofie Van Landeghem
82347110f5
Default empty KB in EL component (#5872)
* EL field documentation

* documentation consistent with docs

* default empty KB, initialize vocab separately

* formatting

* add test for changing the default entity vector length

* update comment
2020-08-04 14:34:09 +02:00
Adriane Boyd
b7e3018d97
Recalculate alignment if tokenization differs (#5868)
* Recalculate alignment if tokenization differs

* Refactor cached alignment data
2020-08-04 14:31:32 +02:00
Adriane Boyd
c62fd878a3
Allow Doc.char_span to snap to token boundaries (#5849)
* Allow Doc.char_span to snap to token boundaries

Add a `mode` option to allow `Doc.char_span` to snap to token
boundaries. The `mode` options:

* `strict`: character offsets must match token boundaries (default, same as
before)
* `inside`: all tokens completely within the character span
* `outside`: all tokens at least partially covered by the character span

Add a new helper function `token_by_char` that returns the token
corresponding to a character position in the text. Update
`token_by_start` and `token_by_end` to use `token_by_char` for more
efficient searching.

* Remove unused import

* Rename mode to alignment_mode

Rename `mode` to `alignment_mode` with the options
`strict`/`contract`/`expand`. Any unrecognized modes are silently
converted to `strict`.
2020-08-04 13:36:32 +02:00
Adriane Boyd
b841248589
Add Span index boundary checks (#5861)
* Add Span index boundary checks

* Return Span-specific IndexError in all cases

* Simplify and fix if/else
2020-08-04 13:35:25 +02:00
Ines Montani
b40f44419b Simplify pipe analysis
- remove unused code
- don't print by default
- integrate attrs info into analysis output
2020-08-01 13:40:06 +02:00
Ines Montani
b68c53858c Remove global 2020-07-31 18:37:58 +02:00
Ines Montani
30a76fcf6f Integrate and simplify pipe analysis 2020-07-31 18:34:35 +02:00
Adriane Boyd
ac14ce7c30
Prefer earlier spans in EntityRuler (#5843)
Similar to #4414, update the sorting in EntityRuler to prefer the first
span in overlapping spans.
2020-07-31 16:09:32 +02:00
Adriane Boyd
9b509aa87f Move Language.evaluate scorer config to new arg
Move `Language.evaluate` scorer config from `component_cfg` to separate
argument `scorer_cfg`.
2020-07-31 11:05:16 +02:00